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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 55 records · Page 3
All sourcesNASA NTRSDOE OSTI
NASA NTRSDate not supplied

Implementing Delay/Disruption Tolerant Networking for NASA’s Plankton, Aerosol, Clouds, ocean Ecosystem (PACE) Mission

NASA’s Plankton, Aerosol, Clouds, ocean Ecosystem (PACE) mission will be the first NASA science mission to use Delay/Disruption Tolerant Networking (DTN) for routine operations. The DTN Bundle Protocol (BP) is being integrated into the core Flight Software (cFS) for the transfer of house-keeping files. DTN nodes will also be integrated into the Near Space Network (NSN) ground stations and the PACE Mission Operations Center. This paper will describe the DTN implementations, the PACE DTN operations concept and how this mission is a significant step towards the Solar System Internet.

dtn↗
NASA NTRS2023

The CHROMA Cloud-Top Pressure Retrieval Algorithm for the Plankton, Aerosol, Cloud, Ocean Ecosystem (PACE) Satellite Mission

This paper provides the theoretical basis and simulated retrievals for the Cloud Height Retrieval from O2 Molecular Absorption (CHROMA) algorithm. Simulations are performed for the Ocean Color Instrument (OCI), which is the primary payload on the forthcoming NASA Plankton, Aerosol, Cloud, ocean Ecosystem (PACE) mission, and the Ocean Land Colour Instrument (OLCI) currently flying on the Sentinel 3 satellites. CHROMA is a Bayesian approach which simultaneously retrieves cloud optical thickness (COT), cloud-top pressure and height (CTP and CTH respectively), and (with a significant prior constraint) surface albedo. Simulated retrievals suggest that the sensor and algorithm should be able to meet the PACE mission goal for CTP error, which is ±60 mb for 65 % of opaque (COT ≥3) single-layer clouds on global average. CHROMA will provide pixel-level uncertainty estimates, which are demonstrated to have skill at telling low-error situations from high-error ones. CTP uncertainty estimates are well-calibrated in magnitude, although COT uncertainty is overestimated relative to observed errors. OLCI performance is found to be slightly better than OCI overall, demonstrating that it is a suitable proxy for the latter in advance of PACE's launch. CTP error is only weakly sensitive to correct cloud phase identification or assumed ice crystal habit/roughness. As with other similar algorithms, for simulated retrievals of multi-layer systems consisting of optically thin cirrus clouds above liquid clouds, retrieved height tends to be underestimated because the satellite signal is dominated by the optically thicker lower layer. Total (liquid plus ice) COT also becomes underestimated in these situations. However, retrieved CTP becomes closer to that of the upper ice layer for ice COT ≈3 or higher.

PACE↗
NASA NTRSDate not supplied

Life After Launch: A Snapshot of the First 6 Months of NASA’s Plankton, Aerosol, Cloud, ocean Ecosystem (PACE) Mission

The NASA Plankton, Aerosol, Cloud, ocean Ecosystem (PACE) mission launched from Kennedy Space Center in the early morning of February 8, 2024. Just 63 days later, data from NASA’s newest Earth-observing satellite became available to the public. These data will extend and improve upon NASA’s 20+ years of global satellite observation of our living oceans, atmospheric aerosols, and cloud and initiate an advanced set of climate-relevant data records. Ultimately, PACE is the first mission to provide daily, global measurements that will enable prediction of the “boom-bust” cycle of fisheries, the appearance of harmful algae, and other factors that affect commercial and recreational industries. PACE also observes clouds and tiny airborne particles known as aerosols that influence air quality and absorb and reflect sunlight, thus warming and cooling the atmosphere. In the months since launch and initial data release, the PACE Project pursued instrument temporal and system vicarious calibrations, executed cross-instrument comparisons, conducted performance assessments, explored synergies with other missions, and released advanced science data products. In parallel, the PACE Validation Science Team left for the field and the Post-launch Airborne eXperiment (PACE-PAX) prepared for its mission. And, most importantly, preliminary science results were realized. Here, we present a snapshot of these activities and their impacts and outcomes, encompassing the first half year of the PACE mission.

PACE↗
DOE OSTI2025

ToF-SIMS spectral data analysis of Paenibacillus sp. 300A biofilms and planktonic cells

Analysis of bacterial biofilms is particularly challenging and important with diverse applications from systems biology to biotechnology. Among the variety of techniques that have been applied, time-of-flight secondary ion mass spectrometry (ToF-SIMS) has many promising features in studying the surface characteristics of biofilms. ToF-SIMS offers high spatial resolution and high mass accuracy, which permit surface sensitive analysis of biofilm components. Thus, ToF-SIMS provides a powerful solution to addressing the challenge of bacterial biofilm analysis. This dataset covers ToF-SIMS analysis of Paenibacillus sp. 300A (300A) isolated from the Hanford site in Richland, WA. The strain is known to have metal and sulfur reducing properties and can be used for bioremediation, wastewater treatment, bioengineering and technology development. There is a current need to identify small molecules and fragments produced from bacterial biofilms. Static ToF-SIMS spectra of 300A were obtained using an IONTOF TOF-SIMS V instrument equipped with a 25 keV Bi 3 + metal ion gun. Identified molecules and molecular fragments are compared against known biological databases and the reported peaks have at least 65 ppm mass accuracy. These molecules range from lipids and fatty acids to flavonoids, quinolones, and other naturally occurring organic compounds. It is anticipated that the spectral identification of key peaks will assist detection of metabolites, extracellular polymeric substance molecules like polysaccharides, and biologically relevant small molecules using ToF-SIMS in future surface and interface research of bacterial biofilms.

Biofilms↗
NASA NTRS1966

Plankton

Grazing and exclusion of marine animals by overconcentration of phytoplankton

PLANKTON↗
DOE OSTI2019

Metabolic effects of vitamin B12 on physiology, stress resistance, growth rate and biomass productivity of Cyanobacterium stanieri planktonic and biofilm cultures

Although synthesized only by bacteria and archaea, cobalamin (vitamin B 12 ) is essential for virtually all living cells. One major function is its role in methionine synthesis, as a co-factor for the B 12 -dependent methionine synthase MetH. However, a large number of microbes avoid requirements for B 12 by encoding cobalamin-independent enzymes, such as the B 12 -independent methionine synthase MetE. Interestingly, many such microbes retain transporters for exogenous B 12 , produced by neighboring microbes. We hypothesize that selection for retention of B 12 transport suggests preservation of unrevealed but critical roles for cobalamin in photoautotroph fitness. As such, to identify the impacts of B 12 on photoautotrophic metabolism, we studied the physiological and transcriptional adaptation of Cyanobacterium stanieri HL-69 to varying irradiance and oxidative stress in the presence and absence of B 12 . The metabolic flexibility of C. stanieri , which possesses both MetH and MetE, allows comparative analysis of cobalamin impacts on its global metabolism. As anticipated, B 12 availability governed transcription of cobalamin transporter btuB , metH and a number of genes involved in the methionine-folate cycle. Surprisingly, however, B 12 impacted the cell integrity, growth rate and biomass productivity of C. stanieri under conditions of likely oxidative stress due to biofilm growth or under high partial pressures of O 2 . Furthermore, C. stanieri response to B 12 globally rewired cellular metabolic networks, including nitrogen metabolism, energy metabolism, redox homeostasis and oxidative stress response. These findings demonstrate previously-unappreciated roles for B 12 metabolism beyond methionine synthesis and reveal how interactions with cobalamin-producing heterotrophs may affect phytoplankton function and dynamics in natural microbial communities. Further comprehension and mastering of the natural oxidative stress resistance mechanisms modulated by cobalamin could be used for the design and implementation of more robust algal bioprocesses retaining high biomass productivities especially under stress conditions.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2023

Eukaryotic genomes from a global metagenomic data set illuminate trophic modes and biogeography of ocean plankton

ABSTRACT Metagenomics is a powerful method for interpreting the ecological roles and physiological capabilities of mixed microbial communities. Yet, many tools for processing metagenomic data are neither designed to consider eukaryotes nor are they built for an increasing amount of sequence data. EukHeist is an automated pipeline to retrieve eukaryotic and prokaryotic metagenome-assembled genomes (MAGs) from large-scale metagenomic sequence data sets. We developed the EukHeist workflow to specifically process large amounts of both metagenomic and/or metatranscriptomic sequence data in an automated and reproducible fashion. Here, we applied EukHeist to the large-size fraction data (0.8–2,000 µm) from Tara Oceans to recover both eukaryotic and prokaryotic MAGs, which we refer to as TOPAZ (Tara Oceans Particle-Associated MAGs). The TOPAZ MAGs consisted of >900 environmentally relevant eukaryotic MAGs and >4,000 bacterial and archaeal MAGs. The bacterial and archaeal TOPAZ MAGs expand upon the phylogenetic diversity of likely particle- and host-associated taxa. We use these MAGs to demonstrate an approach to infer the putative trophic mode of the recovered eukaryotic MAGs. We also identify ecological cohorts of co-occurring MAGs, which are driven by specific environmental factors and putative host-microbe associations. These data together add to a number of growing resources of environmentally relevant eukaryotic genomic information. Complementary and expanded databases of MAGs, such as those provided through scalable pipelines like EukHeist, stand to advance our understanding of eukaryotic diversity through increased coverage of genomic representatives across the tree of life. IMPORTANCE Single-celled eukaryotes play ecologically significant roles in the marine environment, yet fundamental questions about their biodiversity, ecological function, and interactions remain. Environmental sequencing enables researchers to document naturally occurring protistan communities, without culturing bias, yet metagenomic and metatranscriptomic sequencing approaches cannot separate individual species from communities. To more completely capture the genomic content of mixed protistan populations, we can create bins of sequences that represent the same organism (metagenome-assembled genomes [MAGs]). We developed the EukHeist pipeline, which automates the binning of population-level eukaryotic and prokaryotic genomes from metagenomic reads. We show exciting insight into what protistan communities are present and their trophic roles in the ocean. Scalable computational tools, like EukHeist, may accelerate the identification of meaningful genetic signatures from large data sets and complement researchers’ efforts to leverage MAG databases for addressing ecological questions, resolving evolutionary relationships, and discovering potentially novel biodiversity.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2014

Organic Matter Composition, Recycling Susceptibility, and the Effectiveness of the Biological Pump – An Evaluation Using NMR Spectra of Marine Plankton

Carbon (C) sequestration through fertilization of phytoplankton with micronutrients and enhancement of the absorption and retention of atmospheric C by ocean biota heavily depends on the efficiency of the “biological pump”. The long-term effectiveness of this strategy depends on a net transfer of C from the upper ocean-atmosphere system to the deep ocean where the C is removed from contact with the atmosphere for an extended period of time. This C removal can be equated to the amount of C fixation by phytoplankton minus the C cycling and regeneration in the euphotic zone. If the regeneration efficiency is increased, then despite increased C fixation, no net loss (sequestration) of C will result. A reduction in cycling efficiency in the euphotic zone, on the other hand, will increase the effectiveness of the “biological pump” and thus C sequestration. The degree of organic matter biodegradation and recycling depends on the “reactivity” of compounds synthesized by the biota, which in turn, is controlled by the structural characteristic of these compounds. There is considerable evidence that different phytoplankton taxa differ substantially in their biogeochemical characteristics and it is likely that the relative abundance of different compounds synthesized by these distinct taxa, and even within each group at different growth conditions, will differ too. This variability in biosynthesis and thus abundance of a wide range of organic compounds in the water column would lend itself to different susceptibility for biodegradation and regeneration. Knowledge of the distribution of various organic matter structural groups synthesized by distinct taxa, the dependence of the organic matter compound classes on different growth conditions (temperature, light, nutrients) and the selective susceptibility of these compound to regeneration is crucial for estimating the potential for rapid regeneration in the euphotic zone, and thus the effectiveness of the “biological pump”.

58 GEOSCIENCES↗
DOE OSTI2022

Chemotaxonomic patterns in intracellular metabolites of marine microbial plankton

Most biological diversity on Earth is contained within microbial communities. In the ocean, these communities dominate processes related to carbon fixation and nutrient recycling. Yet, specific factors that determine community composition and metabolic activity are difficult to resolve in complex microbial populations, complicating predictions of microbial processes in a changing ocean. Microbial metabolism generates small organic molecules that reflect both the biochemical and physiological diversity as well as the taxonomic specificity of these biological processes. These small molecules serve as the conduit for taxon-specific signaling and exchange. Here, we use liquid chromatography-mass spectrometry (LC-MS)-based metabolomics to taxonomically categorize 111 metabolites that include small molecules in central and secondary metabolism across 42 taxa representing numerically dominant and metabolically important lineages of microbial autotrophs and heterotrophs. Patterns in metabolite presence-absence broadly reflected taxonomic lineages. A subset of metabolites that includes osmolytes, sulfur-containing metabolites, sugars, and amino acid derivatives provided chemotaxonomic information among phytoplankton taxa. A variety of phytohormones and signaling molecules were predominantly found in the heterotrophic bacteria and archaea, expanding knowledge of metabolites implicated in modulating interactions between microbes. This chemotaxonomic inventory of marine microbial metabolites is a key step in deciphering metabolic networks that influence ocean biogeochemical cycles.

54 ENVIRONMENTAL SCIENCES↗
NASA NTRS1973

Dye laser remote sensing of marine plankton

Dye laser, emitting four wavelengths sequentially in time, has been incorporated into helicopter-borne lidar flight package, for performing studies of laser-induced fluorescence of chlorophyll A in algae. Data obtained by multicolor lidar technique can provide water-resource management with rapid-access wide-area coverage of the impact of various environmental factors for any body of water.

Mumola, P. B.↗
NASA NTRS1972

Dynamics of plankton populations in upwelling areas

There are no author-identified significant results in this report. Repeated coverage over the test site along the northwest coast of Africa showed that the structure of chlorophyll distribution is much more complicated than expected from continuous recordings. ERTS-1 data showed a very fast change in the chlorophyll distribution and it seems that also the concentration changes quickly. ERTS-1 showed on some frames offshore transportation of dust from the Sahara. All frames from Channel 7 will be arranged as a montage to derive the transportation pattern of dust. This step is important in biological aspects of interpreting ERTS-1 data, because the dissolution kinetics of eolian dust particles may influence significantly the chemistry of the surface water. Since visibility and the biochemistry of the test site off Africa are influenced by the dust transport, dust collection will be included in the ground truth program. Besides chlorophyll and other hydrographical parameters, the dust load in the test area will be measured. The collection plan is discussed along with a description of the high volume air sampler and the Anderson particle sizing head sampler to be used for the dust measurements.

Szekielda, K.↗