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In this study we extract the deep features and investigate the compression of the MgII k spectral line profiles observed in quiet Sun regions by NASA’s IRIS satellite. The data set of line profiles used for the analysis was obtained on April 20th, 2020, at the center of the solar disc, and contains almost 300,000 individual MgII k line profiles after data cleaning. The data are separated into train and test subsets. The train subset was used to train the autoencoder of the varying embedding layer size. The early stopping criterion was implemented on the test subset to prevent the model from overfitting. Our results indicate that it is possible to compress the spectral line profiles more than 27 times (which corresponds to the reduction of the data dimensionality from 110 to 4) while having a 4DN average reconstruction error, which is comparable to the variations in the line continuum. The mean squared error and the reconstruction error of even statistical moments sharply decrease when the dimensionality of the embedding layer increases from 1 to 4 and almost stop decreasing for higher numbers. The observed occasional improvements in training for values higher than 4 indicate that a better compact embedding may potentially be obtained if other training strategies and longer training times are used. The features learned for the critical four-dimensional case can be interpreted. In particular, three of these four features mainly control the line width, line asymmetry, and line dip formation respectively. The presented results are the first attempt to obtain a compact embedding for spectroscopic line profiles and confirm the value of this approach, in particular for feature extraction, data compression, and denoising.