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At least 55 records · Page 3

Solution structure of the N-terminal domain of proteasome lid subunit Rpn5

The 26S proteasome is the major protein degradation machinery in living cells. The Rpn5 protein is one scaffolding subunit in the lid subcomplex of the 19S regulatory particle in the proteasome holoenzyme. Herein we report the solution structure of the N-terminal domain (NTD) of yeast Rpn5 at high resolution by NMR spectroscopy. The results show that Rpn5 NTD adopts α-solenoid-like fold in right-handed superhelical configuration formed by a number of α-helices. Structural comparisons with currently available cryo-EM structures reveal local structural differences in the first three helices between yeast and human Rpn5. The results further highlight the conformational flexibility in three possible protein interaction sites. Moreover, the structures of the NTD show large variations among different PCI-containing Rpn subunits. Our current results provide atomic-level structural basis for further investigations of protein-protein interactions and the proteasome assembly pathway.

60 APPLIED LIFE SCIENCES↗

Stability of the steady three-dimensional lid-driven flow in a cube and the supercritical flow dynamics

The stability of the steady flow in a lid-driven cube is investigated by a collocation method making use of asymptotic solutions for the singular edges of the cavity up- and downstream of the moving wall. Owing to the rapid convergence of the method high-accuracy critical data are obtained. To determine the critical point subcritical growth rates of small perturbations are extrapolated to zero. We find the bifurcation to be of Hopf-type and slightly subcritical. Above the critical point, the oscillatory flow is symmetric with respect to the symmetric midplane of the cavity and characterized by nearly streamwise vortices in the boundary layer on the wall upstream of the moving wall. The oscillation amplitude grows slowly and seems to saturate. On a long time scale, however, the constant-amplitude oscillations are unstable. The periodic oscillations are interrupted by short bursts during which the oscillation amplitude grows substantially and the spatial structure of the oscillating streamwise vortices changes. Towards the end of each burst the mirror symmetry of the oscillatory flow is lost, the flow returns to the vicinity of the unstable steady state and the growth of symmetric oscillations starts again leading to an intermittent chaotic flow.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Non-gray gas radiation effect on mixed convection in lid driven square cavity

A numerical study is performed to investigate the effect of non-gray radiation on mixed convection in a vertical two sided lid driven square cavity filled with air-H{sub 2}O-CO{sub 2} gas mixture. The vertical moving walls of the enclosure are maintained at two different but uniform temperatures. The horizontal walls are thermally insulated and considered as adiabatic walls. The governing differential equations are solved by a finite-volume method and the SIMPLE algorithm was adopted to solve the pressure–velocity coupling. The radiative transfer equation (RTE) is solved by the discrete ordinates method (DOM). The spectral line weighted sum of gray gases model (SLW) is used to account for non-gray radiation properties. Simulations are performed in configurations where thermal and shear forces induce cooperating buoyancy forces. Streamlines, isotherms, and Nusselt number are analyzed for three different values of Richardson’s number (from 0.1 to 10) and by considering three different medium (transparent medium, gray medium using the Planck mean absorption coefficient, and non-gray medium assumption).

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Onset of transition from laminar to chaos in MHD mixed convection of a lid-driven trapezoidal cavity filled with Cu-water nanofluid

The present study investigates the thermal mixing scenarios of steady magneto-hydrodynamic (MHD) mixed convection in a two-dimensional lid-driven trapezoidal cavity filled with Cu-water nanofluid. The top wall of the cavity slides with a uniform velocity from left to right direction, while the other walls are fixed. The bottom wall is kept with a constant higher temperature than the top one. The governing mass, momentum and energy equations are expressed in non-dimensional forms and Galerkin finite element method has been employed to solve these equations. Special attention is paid on investigating the onset of transition from laminar to chaos at pure mixed convection case. Hence, the computations are carried out for a wide range of Reynolds numbers (Re = 0.1 − 400) and Grashof numbers (Gr = 10{sup −2} − 1.6 × 10{sup 5}) at unity Richardson number and fixed Hartmann number (Ha = 10). The variation of average Nusselt number of the bottom heated wall indicates the influence of governing parameters (Re and Gr) on heat transfer characteristics. The results are presented and explained through the visualisation of isotherms, streamlines and heatlines.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

NEW ASPECTS OF A LID-REMOVAL MECHANISM IN THE ONSET OF AN ERUPTION SEQUENCE THAT PRODUCED A LARGE SOLAR ENERGETIC PARTICLE (SEP) EVENT

We examine a sequence of two ejective eruptions from a single active region on 2012 January 23, using magnetograms and EUV images from the Solar Dynamics Observatory's (SDO) Helioseismic and Magnetic Imager (HMI) and Atmospheric and Imaging Assembly (AIA), and EUV images from STEREO/EUVI. This sequence produced two coronal mass ejections (CMEs) and a strong solar energetic particle event (SEP); here we focus on the magnetic onset of this important space weather episode. Cheng et al. showed that the first eruption's ({sup E}ruption 1{sup )} flux rope was apparent only in ''hotter'' AIA channels, and that it removed overlying field that allowed the second eruption ({sup E}ruption 2{sup )} to begin via ideal MHD instability; here we say that Eruption 2 began via a ''lid removal'' mechanism. We show that during Eruption 1's onset, its flux rope underwent a ''tether weakening'' (TW) reconnection with field that arched from the eruption-source active region to an adjacent active region. Standard flare loops from Eruption 1 developed over Eruption 2's flux rope and enclosed filament, but these overarching new loops were unable to confine that flux rope/filament. Eruption 1's flare loops, from both TW reconnection and standard-flare-model internal reconnection, were much cooler than Eruption 2's flare loops (GOES thermal temperatures of ∼7.5 MK and 9 MK, compared to ∼14 MK). The corresponding three sequential GOES flares were, respectively, due to TW reconnection plus earlier phase Eruption 1 tether-cutting reconnection, Eruption 1 later-phase tether-cutting reconnection, and Eruption 2 tether-cutting reconnection.

79 ASTRONOMY AND ASTROPHYSICS↗

Beyond the Rigid Lid: Baroclinic Modes in a Structured Atmosphere

Abstract The baroclinic-mode decomposition is a fixture of the tropical-dynamics literature because of its simplicity and apparent usefulness in understanding a wide range of atmospheric phenomena. However, its derivation relies on the assumption that the tropopause is a rigid lid that artificially restricts the vertical propagation of wave energy. This causes tropospheric buoyancy anomalies of a single vertical mode to remain coherent for all time in the absence of dissipation. Here, the authors derive the Green’s functions for these baroclinic modes in a two-dimensional troposphere (or, equivalently, a three-dimensional troposphere with one translational symmetry) that is overlain by a stratosphere. These Green’s functions quantify the propagation and spreading of gravity waves generated by a horizontally localized heating, and they can be used to reconstruct the evolution of any tropospheric heating. For a first-baroclinic two-dimensional right-moving or left-moving gravity wave with a characteristic width of 100 km, its initial horizontal shape becomes unrecognizable after 4 h, at which point its initial amplitude has also been reduced by a factor of 1/π. After this time, the gravity wave assumes a universal shape that widens linearly in time. For gravity waves on a periodic domain the length of Earth’s circumference, it takes only 10 days for the gravity waves to spread their buoyancy throughout the entire domain.

54 ENVIRONMENTAL SCIENCES↗

LANL Interactive Display (LID)

The LANL Interactive Display (LID) provides a geographic-based virtual tour of the Laboratory highlighting information on cost, workforce, and facilities for each of the Laboratory’s organizations, capabilities, and programs. The tool can map laboratory business (organization, program, capability) onto the geographic base view, allowing users to explore the full breadth of work at LANL at the touch of a screen. The Display blends the visual location of the laboratory’s infrastructure with assets such as workforce, funding, and equipment for the $4B LANL enterprise.

99 GENERAL AND MISCELLANEOUS↗

Three Dimensional Thermal Pollution Models: Rigid-Lid Models - Volume 2

Three versions of rigid lid programs are presented: one for near field simulation; the second for far field unstratified situations; and the third for stratified basins, far field simulation. The near field simulates thermal plume areas, and the far field version simulates larger receiving aquatic ecosystems. Since these versions have many common subroutines, a unified testing is provided, with main programs for the three possible conditions listed.

Lee, S. S.↗

Thermal Pollution Mathematical Model. Volume 4: Verification of Three-Dimensional Rigid-Lid Model at Lake Keowee

The rigid lid model was developed to predict three dimensional temperature and velocity distributions in lakes. This model was verified at various sites (Lake Belews, Biscayne Bay, etc.) and th verification at Lake Keowee was the last of these series of verification runs. The verification at Lake Keowee included the following: (1) selecting the domain of interest, grid systems, and comparing the preliminary results with archival data; (2) obtaining actual ground truth and infrared scanner data both for summer and winter; and (3) using the model to predict the measured data for the above periods and comparing the predicted results with the actual data. The model results compared well with measured data. Thus, the model can be used as an effective predictive tool for future sites.

Lee, S. S.↗

Thermal Pollution Mathematical Model. Volume 5: User's Manual for Three-Dimensional Rigid-Lid Model

A user's manual for a three dimensional, rigid lid model used for hydrothermal predictions of closed basins subjected to a heated discharge together with various other inflows and outflows is presented. The model has the capability to predict (1) wind driven circulation; (2) the circulation caused by inflows and outflows to the domain; and (3) the thermal effects in the domain, and to combine the above processes. The calibration procedure consists of comparing ground truth corrected airborne radiometer data with surface isotherms predicted by the model. The model was verified for accuracy at various sites and results are found to be fairly accurate in all verification runs.

Lee, S. S.↗

Verification and transfer of thermal pollution model. Volume 3: Verification of 3-dimensional rigid-lid model

The six-volume report: describes the theory of a three dimensional (3-D) mathematical thermal discharge model and a related one dimensional (1-D) model, includes model verification at two sites, and provides a separate user's manual for each model. The 3-D model has two forms: free surface and rigid lid. The former, verified at Anclote Anchorage (FL), allows a free air/water interface and is suited for significant surface wave heights compared to mean water depth; e.g., estuaries and coastal regions. The latter, verified at Lake Keowee (SC), is suited for small surface wave heights compared to depth (e.g., natural or man-made inland lakes) because surface elevation has been removed as a parameter. These models allow computation of time-dependent velocity and temperature fields for given initial conditions and time-varying boundary conditions. The free-surface model also provides surface height variations with time.

Lee, S. S.↗

Verification and transfer of thermal pollution model. Volume 4: User's manual for three-dimensional rigid-lid model

The theory of a three dimensional (3-D) mathematical thermal discharge model and a related one dimensional (1-D) model are described. Model verification at two sites, a separate user's manual for each model are included. The 3-D model has two forms: free surface and rigid lid. The former allows a free air/water interface and is suited for significant surface wave heights compared to mean water depth, estuaries and coastal regions. The latter is suited for small surface wave heights compared to depth because surface elevation was removed as a parameter. These models allow computation of time dependent velocity and temperature fields for given initial conditions and time-varying boundary conditions. The free surface model also provides surface height variations with time.

Lee, S. S.↗

Axisymmetric spherical shell models of mantle convection with variable properties and free and rigid lids

Axisymmetric spherical shell numerical simulations of mantle convection were carried out to investigate the influence of two end-member surface stress conditions: stress-free and rigid. These correspond approximately to a subducting or a rigid lithosphere and can be seen as end-member models of the surface of Venus. Our model assumed an effective Rayleigh number of 3 x 10 exp 6, similar to that for earth, and included uniform internal heating and depth-dependent thermal expansivity and thermal conductivity. The simulations utilized a Newtonian viscosity which was constant or varied with depth and/or temperature. We show how the temperature, speed, and vorticity fields change qualitatively and quantitatively with surface temperature, surface stress condition, internal heating and viscosity distribution. We find that a rigid lid and viscosity which increases with depth both promote steady large-scale circulation with smaller-scale circulation in the upper mantle.

Leitch, A. M.↗

Lid actuation system for shielded cask

A lid system for a shielding cask is provided, the system comprising a plurality of contiguous panels, each panel is axially actuated by a first lift piston located laterally from the casks' longitudinal principal axis, and rotated about the cask by a ‘hinge’ piston at approximately 90 degrees along an arc from the first piston, the arc formed by a portion of the lip of the cask.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

From PAH to fullerenes: Closing a nano bowl with a nano lid

Quantum chemical DLPNO-CCSD(T)/cc-pVDZ//B3LYP/6–31G(d) calculations have been performed to unravel the formation mechanism of buckminsterfullerene (C 60 ) via the reaction of the C 40 nano bowl (C 40 H 10 ) and corannulene (C 20 H 10 ). The generated potential energy surfaces and molecular properties were further utilized to evaluate equilibrium constants and rate constants of elementary chemical reactions involved in the C 60 synthesis. The overall C 40 H 10 + C 20 H 10 → C 60 + 10H 2 reaction is shown to be highly exoergic and hence thermodynamically favorable at temperatures above 700 K and a kinetically feasible pathway under high-temperature conditions was revealed. This route involves hydrogen atom abstraction steps to activate closed-shell reactants/intermediates alternating with cyclodehydrogenation reactions eventually zipping the edges between the reacting C 40 and C 20 units by consecutive closures of six- and five-membered rings between them. The reaction is driven/catalyzed by hydrogen atoms which carry out the hydrogen abstractions from C 60 H x and are later recovered on the cyclodehydrogenation stages. The initial association reaction, C 40 H 9 + C 20 H 10 → C 60 H 18 + H, linking the two units by a covalent C-C bond appears to represent the kinetic bottleneck of the whole multistep process. This reaction is fast at low temperatures but slows down and has its equilibrium shifted toward the reactants at high temperatures. Here, the feasibility of the proposed mechanism corroborates the hypothesis that C 60 can be produced through a series of elementary reactions typical for the PAH growth.

Equilibrium constant↗