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DOE OSTI2025

eLog Analysis for Accelerators: Status and Future Outlook

This work demonstrates electronic logbook (eLog) systems leveraging modern AI-driven information retrieval capabilities at the accelerator facilities of Fermilab, Jefferson Lab, Lawrence Berkeley National Laboratory (LBNL), SLAC National Accelerator Laboratory. We evaluate contemporary tools and methodologies for information retrieval with Retrieval Augmented Generation (RAGs), focusing on operational insights and integration with existing accelerator control systems. The study addresses challenges and proposes solutions for state-of-the-art eLog analysis through practical implementations, demonstrating applications and limitations. We present a framework for enhancing accelerator facility operations through improved information accessibility and knowledge management, which could potentially lead to more efficient operations.

Hellert, Thorsten [LBNL, ALS]↗

DOE OSTI2026

Artificial Intelligence in Nuclear Safeguards; Evaluating Safeguards and Security Risks and Benefits for Advanced and Small Modular Reactor Deployments

Rapidly growing interest in advanced and small modular reactor (A/SMR) technologies presents challenges as well as opportunities for implementing international safeguards and security. A/SMR deployments are expected to be more numerous, more geographically dispersed, and more varied in their designs, placing new demands on the data systems and analytical tools used to support oversight (Alberti et al., 2023; Canadian Nuclear Safety Commission et al., 2024). Because of this variability, the importance and reliance on data systems for A/SMR deployments is expected to be higher than for previous reactor generations. Artificial Intelligence and Machine Learning (AI/ML) offer potential capabilities to address the high variability inherent in A/SMR technology. The beneficiaries of AI-assisted tools include facility operators, government regulators, IAEA inspectors, and A/SMR vendors. This report analyzes how AI/ML-assisted technologies can strengthen the implementation of IAEA safeguards and security measures. It also identifies AI-assisted tools to strengthen operator, facility, and regulator knowledge management practices and examines the potential risks AI/ML-based tools may introduce to IAEA safeguards and security efforts. It concludes with a set of hypothetical, standards-style requirements for AI/ML systems used in safeguards contexts, grounded in an inspector-centric view of system verification. Despite the potential benefits of AI/ML systems, understanding potential intentional and unintentional failure modes is critical for ensuring adequate protection of nuclear materials and facilities. Unique features of A/SMRs including sealed cores, remote and novel paradigms of operation, off-site reactor fabrication, novel fuel forms, and varied refueling requirements, introduce challenges for traditional safeguards technological approaches (Pensado et al., 2024; Federation of American Scientists, 2025). AI/ML systems deployed to address these challenges may introduce new risks requiring systematic evaluation rooted in both AI-specific risk frameworks, such as the NIST AI Risk Management Framework (NIST AI RMF), and established cyber risk management standards such as NIST SP 800-30 (National Institute of Standards and Technology [NIST], 2023; NIST, 2012).

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2026

Grid Architecture Mapping to Understand Transformation (GAMUT): Methods and Framework Architecture

Grid architecture (GA) is a concept that was developed to address the need for a comprehensive view of power grid challenges. GA can be viewed as a relatively consistent and fixed high-level approach; however, for any instantiation of grid structures, a combinatorial explosion results from each lower-layer expansion. This constitutes the main challenge with GA—it is a grid architect’s view of the system, which might not be very informative at the implementation level. Grid Architecture Mapping to Understand Transformation (GAMUT project) seeks to bridge that gap by integrating subject matter expertise across GA structures, providing users who lack expertise in GA approaches with valuable insights and informational materials. GAMUT seeks to answer feasibility questions for the approach. System-level expectations are that a GA baseline needs to be established in order for GA to be the common framework to which any lower layer approach is tied. This report explores a potential information ingestion and documentation framework to support GAMUT. The main concepts that enable the solution domain of GAMUT are discussed, and examples are provided. The solution domain leverages already-existing technology and concepts related to GA, knowledge management, and other relevant areas. To assess GAMUT building blocks and the overall approach, a feasibility assessment is proposed, rooted in systems engineering and GA architecture evaluation concepts.

24 POWER TRANSMISSION AND DISTRIBUTION↗

DOE OSTI2025

Grid Architecture Mapping to Understand Transformation (GAMUT): Concept Definition

The electric power system is undergoing significant transformation driven by changes in the generation mix, increasing reliance on information and communication technologies, evolving customer expectations, and a dynamic cyber-physical environment. To address these challenges, substantial investments will be made over the next decade to create a flexible, affordable, secure, reliable, and resilient electric system. In response, the U.S. Department of Energy's Office of Electricity is developing knowledge management tools aimed at systematically documenting technology pilots and demonstration projects. This initiative seeks to improve understanding of operating contexts, planning steps, and integration requirements for innovative grid technologies. The Department of Energy project leverages Grid Architecture principles to collect and organize insights into the interdependencies, requirements, and capabilities of various grid solutions. By employing a systematic approach, the project aims to perform a feasibility study for the development of a software tool that will support stakeholders, including regulators, transmission and distribution system operators, distributed energy resources aggregators, and technology providers. By offering a systematic, software-based framework to document technologies, understand their benefits and impacts, and inform deployment strategies, the proposed Grid Architecture Mapping to Understand Transformation (GAMUT) Tool is intended to reduce costs, enhance decision-making, and facilitate scaling and effective deployment of new technologies. The feasibility study will evaluate the technical and financial viability of the GAMUT Tool, identifying stakeholder needs and assessing risks and mitigation strategies. Ultimately, the GAMUT team aims to develop an initial minimal viable product, followed by staged improvements, to aid in the modernization of the electric grid, contributing to a more sustainable and resilient energy future.

24 POWER TRANSMISSION AND DISTRIBUTION↗

DOE OSTI2025

eLog analysis for accelerators: status and future outlook

Sulc, A. [LBL, Berkeley]↗

DOE OSTI2025

Mondo: integrating disease terminology across communities

Precision medicine aims to enhance diagnosis, treatment, and prognosis by integrating multimodal data at the point of care. However, challenges arise due to the vast number of diseases, differing methods of classification, and conflicting terminological coding systems and practices used to represent molecular definitions of disease. This lack of interoperability artificially constrains the potential for diagnosis, clinical decision support, care outcome analysis, as well as data linkage across research domains to support the development or repurposing of therapeutics. There is a clear and pressing need for a unified system for managing disease entities⁠—including identifiers, synonyms, and definitions. To address these issues, we created the Mondo disease ontology—a community-driven, open-source, unified disease classification system that harmonizes diverse terminologies into a consistent, computable framework. Mondo integrates key medical and biomedical terminologies, including Online Mendelian Inheritance in Man (OMIM), Orphanet, Medical Subject Headings (MeSH), National Cancer Institute Thesaurus (NCIt), and more, to provide a comprehensive and accurate representation of disease concepts with fully provenanced and attributed links back to the sources. Mondo can be used as the handle for curation of gene–disease associations utilized in diagnostic applications, research applications such as computational phenotyping, and in clinical coding systems in clinical decision support by pointing the clinician to the numerous knowledge resources linked to the Mondo identifier. Mondo's community-centric approach, stewarded by the Monarch Initiative's expertise in ontologies, ensures that the ontology remains adaptable to the evolving needs of biomedical research and clinical communities, as well as the knowledge providers.

biomedical informatics↗

DOE OSTI2020

The Intern Professional Development Center: A Model for Improving Student Engagement Within Industry - 20006

Many innovations and technical improvements have been made over the last half-century regarding our understanding of nuclear materials, with some of the brightest minds in the world collectively working towards a cleaner, brighter, healthier future. However, there is a demographical oddity with the enormous technical workforce that helped shape this new world: they are aging, collectively. Known as the 'silver tsunami,' mass retirements are in the near future for many technical industries, something that the industrial community is not entirely prepared to accommodate. There is an urgent need for a tech-savvy generation to replace the baby boomers, and there must be an uninterrupted hand-off from one generation to the next of institutional knowledge and best practices. Further, it is not enough to simply replace every retiring engineer with a younger one in a 'cold hand-off' - this information transfer takes time. Many educational communities, such as those in the Tri-Cities, Washington, are rising to the challenge, with STEM-focused programs, introducing students to technical concepts and potential career opportunities at an early age. However, while individually, academic institutions search for internships and industry has open positions for interested students, no single clearinghouse exists in the Mid-Columbia region to match talent with opportunities, regardless of the sending or receiving organizations. To fill this void, AYB Drafting (AYB) has established a career development and personal growth center, the Intern Professional Development Center (IPDC). The IPDC, located in Richland, Washington, addresses the problem of what has been referred to as the 'Graying of America,' as it bridges the gap between education and career for the up and coming workforce, creating valuable efficiencies for the young workforce and the industry alike. The operating principles and details of the initial IPDC launch are discussed in the following text, as well as the apparent success and overwhelming positive feedback received in just the first year of operation. (authors)

96 KNOWLEDGE MANAGEMENT AND PRESERVATION↗

DOE OSTI2025

Pivotal trial characteristics and types of endpoints used to support Food and Drug Administration rare disease drug approvals between 2013 and 2022

Background/aims Rare disease drug development faces unique challenges, such as genotypic and phenotypic heterogeneity within small patient populations and a lack of established outcome measures for conditions without previously successful drug development programs. These challenges complicate the process of selecting the appropriate trial endpoints and conducting clinical trials in rare diseases. In this descriptive study, we examined novel drug approvals for non-oncologic rare diseases by the U.S. Food and Drug Administration’s Center for Drug Evaluation and Research over the past decade and characterized key regulatory and trial design elements with a focus on the primary efficacy endpoint utilized as the basis of approval. Methods Using the Food and Drug Administration’s Data Analysis Search Host database, we identified novel new drug applications and biologics license applications with orphan drug designation that were approved between 2013 and 2022 for non-oncologic indications. From Food and Drug Administration review documents and other external databases, we examined characteristics of pivotal trials for the included drugs, such as therapeutic area, trial design, and type of primary efficacy endpoints. Differences in trial design elements associated with primary efficacy endpoint type were assessed such as randomization and blinding. Then, we summarized the primary efficacy endpoint types utilized in pivotal trials by therapeutic area, approval pathway, and whether the disease etiology is well defined. Results One hundred and seven drugs that met our inclusion criteria were approved between 2013 and 2022. Assessment of the 107 drug development programs identified 150 pivotal trials that were subsequently analyzed. The pivotal trials were mostly randomized (80%) and blinded (69.3%). Biomarkers (41.1%) and clinical outcomes (42.1%) were commonly utilized as primary efficacy endpoints. Analysis of the use of clinical trial design elements across trials that utilized biomarkers, clinical outcomes, or composite endpoints did not reveal statistically significant differences. The choice of primary efficacy endpoint varied by the drug’s therapeutic area, approval pathway, and whether the indicated disease etiology was well defined. For example, biomarkers were commonly selected as primary efficacy endpoints in hematology drug approvals (70.6%), whereas clinical outcomes were commonly selected in neurology drug approvals (69.6%). Further, if the disease etiology was well defined, biomarkers were more commonly used as primary efficacy endpoints in pivotal trials (44.7%) than if the disease etiology was not well defined (27.3%). Discussion In the past 10 years, numerous novel drugs have been approved to treat non-oncologic rare diseases in various therapeutic areas. To demonstrate their efficacy for regulatory approval, biomarkers and clinical outcomes were commonly utilized as primary efficacy endpoints. Biomarkers were not only frequently used as surrogate efficacy endpoints in accelerated approvals, but also in traditionally approved rare disease drugs. The choice of primary efficacy endpoints varied by therapeutic area, approval pathway, and understanding of disease etiology.

Hong, Kyungwan [Rare Diseases Team, Office of New ↗

DOE OSTI2020

Data Curation and Standards [Slides]

Data curation and standards are described for legacy, current, and future data storage and management.

96 KNOWLEDGE MANAGEMENT AND PRESERVATION↗

DOE OSTI2024

Industry case studies: Finance

This article, the third in a series on the U.S. Department of Energy and IDEA collaboration, focuses on financial strategies used by institutions to support district energy system modernization and decarbonization. It highlights how effective funding models, long-term cost analysis, and leadership support are critical to implementing large-scale infrastructure upgrades. The case studies show different approaches to financing. Ball State University demonstrates how life-cycle cost analysis and phased funding—supported by state funding, bonds, and grants—enabled a transition to geothermal energy. Penn State’s Hershey Medical Center emphasizes the importance of financial leadership, shifting from reactive budgeting to data-driven, proactive investment in infrastructure. The University of Washington highlights how comprehensive data collection and analytics can justify investments and even create self-sustaining funding mechanisms like green revolving funds. Overall, the article shows that combining strong financial planning, data-driven decision-making, and innovative funding approaches is essential for advancing sustainable district energy systems while managing high upfront costs.

96 KNOWLEDGE MANAGEMENT AND PRESERVATION↗

DOE OSTI2022

NNMC–DP Continuing Education Summary [Slides]

DP technicians voiced a desire for more development and learning opportunities. DP management and technician partners identified the opportunity to expand the knowledge of the technicians through employee development to strengthen the collaboration.

96 KNOWLEDGE MANAGEMENT AND PRESERVATION↗

DOE OSTI2023

KEBLM: Knowledge-Enhanced Biomedical Language Models

Pretrained language models (PLMs) have demonstrated strong performance on many natural language processing (NLP) tasks. Despite their great success, these PLMs are typically pretrained only on unstructured free texts without leveraging existing structured knowledge bases that are readily available for many domains, especially scientific domains. As a result, these PLMs may not achieve satisfactory performance on knowledge-intensive tasks such as biomedical NLP. Comprehending a complex biomedical document without domain-specific knowledge is challenging, even for humans. Inspired by this observation, we propose a general framework for incorporating various types of domain knowledge from multiple sources into biomedical PLMs. We encode domain knowledge using lightweight adapter modules, bottleneck feed-forward networks that are inserted into different locations of a backbone PLM. For each knowledge source of interest, we pretrain an adapter module to capture the knowledge in a self-supervised way. We design a wide range of self-supervised objectives to accommodate diverse types of knowledge, ranging from entity relations to description sentences. Once a set of pretrained adapters is available, we employ fusion layers to combine the knowledge encoded within these adapters for downstream tasks. Each fusion layer is a parameterized mixer of the available trained adapters that can identify and activate the most useful adapters for a given input. Our method diverges from prior work by including a knowledge consolidation phase, during which we teach the fusion layers to effectively combine knowledge from both the original PLM and newly-acquired external knowledge using a large collection of unannotated texts. After the consolidation phase, the complete knowledge-enhanced model can be fine-tuned for any downstream task of interest to achieve optimal performance. Extensive experiments on many biomedical NLP datasets show that our proposed framework consistently improves the performance of the underlying PLMs on various downstream tasks such as natural language inference, question answering, and entity linking. These results demonstrate the benefits of using multiple sources of external knowledge to enhance PLMs and the effectiveness of the framework for incorporating knowledge into PLMs. Finally, while primarily focused on the biomedical domain in this work, our framework is highly adaptable and can be easily applied to other domains, such as the bioenergy sector.

96 KNOWLEDGE MANAGEMENT AND PRESERVATION↗

DOE OSTI2024

Dynamic Retrieval Augmented Generation of Ontologies using Artificial Intelligence (DRAGON-AI)

Ontologies are fundamental components of informatics infrastructure in domains such as biomedical, environmental, and food sciences, representing consensus knowledge in an accurate and computable form. However, their construction and maintenance demand substantial resources and necessitate substantial collaboration between domain experts, curators, and ontology experts. We present Dynamic Retrieval Augmented Generation of Ontologies using AI (DRAGON-AI), an ontology generation method employing Large Language Models (LLMs) and Retrieval Augmented Generation (RAG). DRAGON-AI can generate textual and logical ontology components, drawing from existing knowledge in multiple ontologies and unstructured text sources.We assessed performance of DRAGON-AI on de novo term construction across ten diverse ontologies, making use of extensive manual evaluation of results. Our method has high precision for relationship generation, but has slightly lower precision than from logic-based reasoning. Our method is also able to generate definitions deemed acceptable by expert evaluators, but these scored worse than human-authored definitions. Notably, evaluators with the highest level of confidence in a domain were better able to discern flaws in AI-generated definitions. We also demonstrated the ability of DRAGON-AI to incorporate natural language instructions in the form of GitHub issues.These findings suggest DRAGON-AI's potential to substantially aid the manual ontology construction process. However, our results also underscore the importance of having expert curators and ontology editors drive the ontology generation process.

96 KNOWLEDGE MANAGEMENT AND PRESERVATION↗

DOE OSTI2020

Metaevaluation Final Report: Sandia National Laboratories Recorded Information Management Training Program Evaluation

For my internship project, I chose to evaluate the training program for the Sandia National Laboratories (SNL) Recorded Information Management (RIM) Program. The purpose of the evaluation was to identify: Where the current training meets federal and corporate requirements and if not, what gaps exist; If the training is accessible in a consistent location; If the training contains a consistent message about the responsibility of managing documents; If the training is organized by records management subject areas.

96 KNOWLEDGE MANAGEMENT AND PRESERVATION↗

DOE OSTI2020

49109 UTrain Delta Training

Upon successful completion of this training, the learner will understand how the upgraded interface, functional, and security features of the Laboratory's UTrain Learning Management System impacts administrative users.

96 KNOWLEDGE MANAGEMENT AND PRESERVATION↗

DOE OSTI2022

NCSP Activities at BNL (FY21) [Slides]

All 3 BNL NCSP (ND, AM, TS) tasks are reported as being on time and slightly under budget. Several COVID-19 related impacts are noted. The release of ENDF/B-VIII.1 has been delayed for 1 year to Feb 2024. New ENDF Library Manager appointment announced as Gustavo Nobre.

96 KNOWLEDGE MANAGEMENT AND PRESERVATION↗

DOE OSTI2021

Interactive Web Application for Traffic Simulation Data Management and Visualization

As traffic simulation software becomes more effective for realistically simulating and analyzing traffic dynamics and vehicle interactions on the mesoscopic and microscopic level, the management, dissemination, and collaborative visualization of traffic simulation results produced by individual transportation planners presents a significant challenge. Existing online content management systems have a very limited capability in allowing users to query specific traffic simulation scenarios and geospatially visualize simulation results through shareable and interactive web interfaces. This paper presents a web-based application for promoting the archiving, sharing, and visualization of large-scale traffic simulation outputs. The application is developed to enhance cyber-physical controls, communications, and public education for collaborative transportation planning. Unique features of the web application include: (a) allowing users to upload their new traffic simulation scenarios (parameters and outputs), as well as search existing scenarios using easily accessible interfaces; (b) optimizing simulation output files with heterogeneous data formats and projected coordinate systems for web-based storage and management using a scalable and searchable data/metadata standard; (c) standardizing user-uploaded simulation outputs using web interfaces and data processing libraries with parallel computing capacity; and (d) providing shareable web visual interfaces for visualizing the traffic flow and signal information stored in simulation outputs (e.g., regional traffic patterns and individual vehicle interactions) and visually comparing multiple simulation outputs both spatially and temporally. Furthermore, the paper presents the conceptual design and implementation of this application, and demonstrates the application’s performance for sharing, comparing, and visualizing simulation outputs from VISSIM and SUMO, two commonly used traffic simulation software programs.

96 KNOWLEDGE MANAGEMENT AND PRESERVATION↗

DOE OSTI2020

Final Evaluation Report for the Sandia National Laboratories Recorded Information Management Training Program

The Recorded Information Management (RIM) training and guidance materials were originally evaluated to determine the current status of the training program. Specifically, how and where are training materials implemented and are members of the workforce (MOWs) regularly accessing them. The evaluation highlighted that there is a breadth of training materials and guidance available; however, the materials are often outdated, point to old Sandia Policies, and/or are in outdated templates. Additionally, there is currently no single-entry point for training, meaning that training is available via the RIM homepage, TEDs, etc. This means that MOWs must search in various webpages or systems for training. To ensure RIM training materials are regularly updated and are accessible for MOWs it is recommended to assign one staff member to manage the program training materials.

96 KNOWLEDGE MANAGEMENT AND PRESERVATION↗