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At least 55 records · Page 3

From soil to sequence: filling the critical gap in genome-resolved metagenomics is essential to the future of soil microbial ecology

Abstract Soil microbiomes are heterogeneous, complex microbial communities. Metagenomic analysis is generating vast amounts of data, creating immense challenges in sequence assembly and analysis. Although advances in technology have resulted in the ability to easily collect large amounts of sequence data, soil samples containing thousands of unique taxa are often poorly characterized. These challenges reduce the usefulness of genome-resolved metagenomic (GRM) analysis seen in other fields of microbiology, such as the creation of high quality metagenomic assembled genomes and the adoption of genome scale modeling approaches. The absence of these resources restricts the scale of future research, limiting hypothesis generation and the predictive modeling of microbial communities. Creating publicly available databases of soil MAGs, similar to databases produced for other microbiomes, has the potential to transform scientific insights about soil microbiomes without requiring the computational resources and domain expertise for assembly and binning.

59 BASIC BIOLOGICAL SCIENCES↗

A beamline for ultrafast extreme ultraviolet magneto-optical spectroscopy in reflection near the shot noise limit

High harmonic generation (HHG) makes it possible to measure spin and charge dynamics in materials on femtosecond to attosecond timescales. However, the extreme nonlinear nature of the high harmonic process means that intensity fluctuations can limit measurement sensitivity. Here we present a noise-canceled, tabletop high harmonic beamline for time-resolved reflection mode spectroscopy of magnetic materials. We use a reference spectrometer to independently normalize the intensity fluctuations of each harmonic order and eliminate long term drift, allowing us to make spectroscopic measurements near the shot noise limit. Here, these improvements allow us to significantly reduce the integration time required for high signal-to-noise (SNR) measurements of element-specific spin dynamics. Looking forward, improvements in the HHG flux, optical coatings, and grating design can further reduce the acquisition time for high SNR measurements by 1–2 orders of magnitude, enabling dramatically improved sensitivity to spin, charge, and phonon dynamics in magnetic materials.

47 OTHER INSTRUMENTATION↗

Electro-mechanical Modeling of Wind Turbine and Energy Storage Systems with Enhanced Inertial Response

In this paper, a coordinated control scheme for wind turbine generator (WTG) and supercapacitor energy storage system (ESS) is proposed for temporary frequency supports. Inertial control is designed by using generator torque limit considering the security of WTG system, while ESS releases its energy to compensate the sudden active power deficit during the recovery process of turbine rotor. WTG is modeled using the fatigue, aerodynamic, structure, turbulence (FAST) code, which identifies the mechanical loadings of the turbine and addresses electro-mechanical interactions in the wind energy system. A damping controller is augmented to the inertial control to suppress severe mechanical oscillations in the shaft and tower of the turbine during frequency supports. Furthermore, the result of small-signal stability analysis shows that the WTG-ESS tends to improve the stability of the whole multi-energy power grid. The major contributions of this paper will be validated by utilizing the proposed control method that combines the grid support capability and maintaining the integrity of structural design of the turbine for normal operations.

17 WIND ENERGY↗

Mechanical Actuation via Homeomorphic Transformations of Topological Solitons within Polymer Coatings

Abstract Topological solitons are currently under investigation for their exotic properties, especially in nonlinear physics, optics, and material sciences. However, challenges of robust generation and limited stability over time have hindered their practical uses. To address this issue, an approach is developed to form structured arrays of solitons in films of polymerizable liquid crystals. Their complex molecular architecture is preserved by in situ photopolymerization forming a stable liquid crystal network. Most excitingly, their properties are advanced to include responsiveness functions. When thermally actuated, these topological solitons mediate the reconfiguration of surface topographies. Complex shape changes occur depending on the intrinsic complex spatial distribution of the director, which may even lead to full shape inversion and topographical changes as high as ≈40% of the initial thickness. Conversely, the shape changes provide information on the initial director profile, which is consistent with the mathematical model. The soliton‐containing polymer coatings are applicable in multiple domains, ranging from tunable optics to haptics, and from shape‐coupled sensing systems to temperature‐coupled heat management.

36 MATERIALS SCIENCE↗

From large to small $$ \mathcal{N} $$ = (4, 4) superconformal surface defects in holographic 6d SCFTs

Abstract Two-dimensional (2d)$$ \mathcal{N} $$ N = (4, 4) Lie superalgebras can be either “small” or “large”, meaning their R-symmetry is either$$ \mathfrak{so} $$ so (4) or$$ \mathfrak{so} $$ so (4) ⊕$$ \mathfrak{so} $$ so (4), respectively. Both cases admit a superconformal extension and fit into the one-parameter family$$ \mathfrak{d} $$ d (2,1;γ) ⊕$$ \mathfrak{d} $$ d (2,1;γ), with parameterγ∈ (−∞,∞). The large algebra corresponds to generic values ofγ, while the small case corresponds to a degeneration limit withγ→ −∞. In 11d supergravity, we study known solutions with superisometry algebra$$ \mathfrak{d} $$ d (2,1;γ) ⊕$$ \mathfrak{d} $$ d (2,1;γ) that are asymptotically locally AdS 7 ×𝕊 4 . These solutions are holographically dual to the 6d maximally superconformal field theory with 2d superconformal defects invariant under$$ \mathfrak{d} $$ d (2,1;γ) ⊕$$ \mathfrak{d} $$ d (2,1;γ). We show that a limit of these solutions, in whichγ→ −∞, reproduces another known class of solutions, holographically dual tosmall$$ \mathcal{N} $$ N = (4, 4) superconformal defects. We then use this limit to generate new small$$ \mathcal{N} $$ N = (4, 4) solutions with finite Ricci scalar, in contrast to the known small$$ \mathcal{N} $$ N = (4, 4) solutions. We then use holography to compute the entanglement entropy of a spherical region centered on these small$$ \mathcal{N} $$ N = (4, 4) defects, which provides a linear combination of defect Weyl anomaly coefficients that characterizes the number of defect-localized degrees of freedom. We also comment on the generalization of our results to include$$ \mathcal{N} $$ N = (0,4) surface defects through orbifolding.

Physics↗

Extracting Einstein from the loop-level double-copy

The naive double-copy of (multi) loop amplitudes involving massive matter coupled to gauge theories will generically produce amplitudes in a gravitational theory that contains additional contributions from propagating antisymmetric tensor and dilaton states even at tree-level. We present a graph-based approach that combines the method of maximal cuts with double-copy construction to offer a systematic framework to isolate the pure Einstein-Hilbert gravitational contributions through loop level. Indeed this allows for a bootstrap of pure-gravitational results from the double-copy of massive scalar-QCD. We apply this to construct the novel result of the D-dimensional one-loop five-point QFT integrand relevant in the classical limit to generating observables associated with the radiative effects of massive black-hole scattering via pure Einstein-Hilbert gravity.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Consumer safety-oriented scheduling of rotating power outages during heat waves

Extreme heat events have widespread effects on power systems, reducing available generation capacity, limiting transmission capabilities, and causing unusual demand patterns on the consumer side. As these combined effects expose bulk transmission systems to potential large-scale blackouts, utilities may be required to schedule and apply rotating outages, by temporarily and alternately disconnecting distribution substations to reduce overload. However, utilities lack mechanisms to inform these events, exacerbating the negative effects of heat waves on affected communities. This paper introduces a novel framework for scheduling rotating outages during heat waves while considering impacts on consumers’ safety. Instead of random sequential load shedding, we propose a methodology to rotate power outages considering a metric that quantifies the indoor overheating risk of groups of consumers during a power outage. The overheating risk is derived from a detailed building simulation using CityBES, where the buildings are modeled based on available data—use type, year built, floor area, number of stories, location—while presence of air conditioning and occupancy are calibrated from smart meter data. Based on the metric, an algorithm to schedule the rotating outages is applied to prioritize feeders for disconnection at each hour according to their overheating risk to meet a utility load reduction target. Applied to two substations and seven feeders in the Portland General Electric territory, the results show that this approach effectively leads to the lowest overheating risk during the resulting outage schedules, with an average 10.1% lower overheating compared to uninformed schedules.

Building thermal simulation↗

Extended real-time voltage instability identification method based on synchronized phasor measurements

This paper presents an extended adaptive approach designed to accurately estimate the Thévenin equivalent parameters using phasor measurements at a given bus for measurements lying in any of four quadrants of the PQ-plane. The improvement is achieved by using a new condition to properly update the estimated parameters after an initial guess. Based on an adaptive philosophy, the proposed approach can correctly account for the intrinsic nonlinearities of a power system, can provide a real-time estimation of Thévenin parameters, and does not require network topology knowledge. The method is validated using the Kundur 2-area system, showing estimation improvements compared to the current adaptive approach and the classical recursive least-squares method. The proposed approach is able to estimate both sides of the system with respect to the measurement bus. In addition, a data-driven voltage stability index is developed. To illustrate the performance of the proposed approach in a larger power system, a voltage stability assessment is carried out on the IEEE 39-bus system, considering the action of overexcitation limiters of generators and nonlinear loads. The proposed approach is suitable for applications that require an accurate Thévenin equivalent estimation in real-time, such as for voltage stability assessment. The new approach provides a reliable tool for the system operators to make proper and timely decisions.

42 ENGINEERING↗

Multi-parametric analysis for mixed integer linear programming: An application to transmission upgrade and congestion management

Upgrading the capacity of existing transmission lines is essential for meeting the growing energy demands, facilitating the integration of renewable energy, and ensuring the security of the transmission system. This study focuses on the selection of lines whose capacities and by how much should be expanded from the perspective of the Independent System Operators (ISOs) to minimize the total system cost. We employ advanced multi-parametric programming and an enhanced branch-and-bound algorithm to address complex mixed-integer linear programming (MILP) problems, considering multi-period time constraints and physical limitations of generators and transmission lines. To characterize the various decisions in transmission expansion, we model the increased capacity of existing lines as parameters within a specified range. This study first relaxes the binary variables to continuous variables and applies the Lagrange method and Karush-Kuhn-Tucker (KKT) conditions to obtain optimal solutions and identify critical regions associated with active and inactive constraints. Moreover, we extend the traditional branch-and-bound (B&B) method by determining the problem’s upper and lower bounds at each node of the B&B decision tree, helping to manage computational challenges in large-scale MILP problems. Here, we compare the difference between the upper and lower bounds to obtain an approximate optimal solution within the decision-makers’ tolerable error range. In addition, the first derivative of the objective function on the parameters of each line is used to inform the selection of lines for easing congestion and maximizing social welfare. Finally, the capacity upgrades are selected by weighing the reductions in system costs against the expense of upgrading line capacities. The findings are supported by numerical simulations and provide transmission-line planners with decision-making guidance.

24 POWER TRANSMISSION AND DISTRIBUTION↗

Energy, economic, and environmental tradeoffs at run-of-river hydropower facilities

Hydropower’s ability to quickly adapt to variability from wind and solar generation by fluctuation flow rates can allow the electricity grid to integrate more renewable capacity. However, these rapid flow fluctuations, required to meet variability needs, can negatively impact aquatic ecosystems. In this study, we quantified energy-economic-environment tradeoffs at five conventional hydropower facilities (i.e. hydropower produced ad a dam on a river channel) across the United States to identify a mix of operational regimes that can provide flexibility to support variable renewable energy integration and environmental protections. Model results show a range of ability to meet demand from 4.7% to 97.8% depending on which case study is considered. Additionally, when modeling the case study facilities on a range of RoR conditions, allowing a % of inflow as discharge, we found the range of 140–200% of inflow allowed as discharge lead to lowest environmental impact while meeting the highest amount of demand. Our sensitivity analysis results demonstrated the Richard-Baker Flashiness Index, used to measure flowrate changes, and Revenue, were negatively correlated with the percent of hydropower generation within the defined Regional Energy Deployment System balancing area (i.e. region in which energy demand and energy supply is balanced based on the Regional Energy Deployment System model) yet positively correlated to the variable renewable energy generation percentage in the defined balancing area. In conclusion, our results suggest hydropower operations can aid in increasing renewable energy generation while limiting environmental impacts when considering a holistic analysis of energy-economic-environment tradeoffs.

Economic impact↗

Electroprecipitation Mechanism Enabling Silica and Hardness Removal through Aluminum-Based Electrocoagulation

We evaluate the effectiveness of an aluminum-based electrocoagulation pretreatment system to remove dissolved silica and hardness. Silica and hardness limit water recovery during membrane-based desalination applications when silica and hardness exceed the solubility limit and generate scale on the membrane surface. We show that simultaneous removal of nearly all silica (95 ± 4%) and a significant amount of hardness (40–60%) occurs with a hydraulic residence time of 2 h and a charge loading between 0 and 1200 C/L. Increasing the residence time maximized the hardness removal (58 ± 8%) via the formation of larger flocs, which allowed for more constituent removal by gravity settling. We highlight the trade-offs between improved energy efficiency at lower charge loadings and an improved removal rate at a higher charge loading. We further compare the percentage of silica and hardness removed in multicomponent solutions and compare this to single component feed solution. We discuss the implications that operational considerations have in terms of cost and treatment capacity. Finally, a cost–benefit analysis comparing chemical coagulation with electrocoagulation indicates that electrocoagulation could be half the cost of chemical coagulation and could produce more stable effluent pH and conductivity.

36 MATERIALS SCIENCE↗

Geologic hydrogen: a review of resource potential, subsurface dynamics, exploration, production, transportation, and research opportunities

Hydrogen is a versatile resource with critical roles in decarbonization, industrial manufacturing, and energy integration. However, most hydrogen today is produced from fossil fuels, resulting in high emissions and energy consumption. Although low-carbon hydrogen production methods, such as steam methane reforming with carbon capture and renewable-powered electrolysis, are advancing, their high costs hinder large-scale deployment. Identifying alternative pathways for producing low-cost, low-emission hydrogen is therefore essential. Geologic hydrogen, referring to natural and stimulated hydrogen generated in the Earth's subsurface, has attracted growing attention as a potential source of sustainable, economically viable, and environmentally favorable hydrogen. This paper provides a comprehensive review of geologic hydrogen, covering its resource potential, origins, migration and trapping mechanisms, exploration techniques, production strategies, and pipeline transportation. It also identifies key knowledge gaps and proposes a roadmap for future research. The review indicates that geologic hydrogen has vast resource potential and can leverage existing subsurface technologies and geophysical exploration methods. However, major challenges persist, including uncertain hydrogen generation rates, limited understanding and control of serpentinization processes, costly transportation infrastructure, the lack of validated techno-economic analysis, and potential social and environmental issues. As the field is still in its early stages, progress will require interdisciplinary collaboration spanning geoscience, engineering, economics, environmental science, and policy and regulation.

42 ENGINEERING↗

Modeling Electric Vehicle Charging Load Using Origin-Destination Data

The accelerating adoption of electric vehicles (EVs) poses challenges to the power grid, necessitating precise representation of mobility patterns for effective infrastructure upgrades. Traditional simulation-based charging demand estimation faces limitations in generating trip chains reflective of actual travel patterns without complex network modeling. Hence, an innovative agent-based trip chain generation model is introduced to overcome these challenges. Drawing from the National Household Travel Survey (NHTS) and the NextGen NHTS origin-destination add-on data for Clarke County, Georgia, this study proposes a simulation method capturing both temporal and spatial mobility patterns without relying on extensive network topology data. The resulting trip chains predict EV charging load at the Census Block Group level, validated with a 1.03 correlation to actual trip counts, affirming their reflective accuracy. Two charging scenarios, residential-only and charging-everywhere, reveal distinct demand profiles. The charging-everywhere scenario aligns closely with the trip profile, while the residential-only scenario exhibits an afternoon peak slightly surpassing the former. This study contributes a data-driven charging demand estimation methodology, offering critical insights for grid resiliency planning amid the evolving landscape of EV adoption.

Pan, Melrose↗

Consensus-Based Control and Optimization of Power System Inertia

The integration of distributed energy resources (DERs), such as solar, wind, and energy storage systems, into power grids through inverter-based resources reduces power system inertia, leading to faster frequency dynamics and potential grid instability. To address this challenge, this paper proposes a distributed, consensus-based approach for the real-time control and optimization of inertia sources (synchronous generators and/or DERs) during system disturbances, enhancing both system stability and economic performance. The distributed control and optimization approach assumes each inertia source exchanges information solely with its neighbor ones, making it easily scalable to large power grid networks. The impacts of the communication connectivity among the inertia sources as well as their generation capacity limits on the distributed approach are investigated. We also demonstrate the approach’s robustness in scenarios involving communication time delays and packet losses, validating its effectiveness through numerical simulations on a 4-bus test system and a two-area 8-bus test system.

Power system inertia↗

The architecture of resilience: a genome assembly of Myrothamnus flabellifolia sheds light on desiccation tolerance and sex determination

Myrothamnus flabellifolia is a dioecious resurrection plant endemic to southern Africa that has become an important model for understanding desiccation tolerance. Despite its ecological and medicinal significance, genomic and transcriptomic resources for the species are limited. We generated a chromosome-level, haplotype-resolved reference genome assembly and annotation for M. flabellifolia and conducted transcriptomic profiling across a natural dehydration–rehydration time course in the field. Genome architecture and sex determination were characterized, and co-expression network and cis-regulatory element (CRE) enrichment analyses were used to investigate dynamic responses to desiccation. The 1.28-Gb genome exhibits unusually consistent chromatin architecture with unique chromosome organization across highly divergent haplotypes. We identified an XY sexual system with a small sex-determining region on Chromosome 8. Transcriptomic responses varied with dehydration severity, pointing to early suppression of growth, progressive activation of protective mechanisms, and subsequent return to homeostasis upon rehydration. Late embryogenesis abundant and early light-induced protein transcripts were dynamically regulated and showed enrichment of abscisic acid and stress-responsive CREs pointing toward conserved responses. Together, this study provides foundational resources for understanding the genomic architecture and reproductive biology of M. flabellifolia and offers new insights into the mechanisms of desiccation tolerance.

chromosome structure↗

Pleiotropic Effects of Influenza H1, H3, and B Baloxavir-Resistant Substitutions on Replication, Sensitivity to Baloxavir, and Interferon Expression

Baloxavir is an anti-influenza endonuclease inhibitor that targets the polymerase acidic (PA) protein of influenza A and B viruses. Our knowledge regarding the pleiotropic effects of baloxavir resistance-associated substitutions is limited. We generated recombinant A/California/04/09 (H1N1)-, A/Hong Kong/218849/2006 (H3N2)-, and B/Victoria/504/2000-like viruses that contained PA substitutions identified in baloxavir clinical trials and surveillance that could potentially be associated with baloxavir resistance. We characterized their susceptibility to baloxavir, impact on polymerase activity, viral growth, and ability to induce interferon (IFN) and IFN-stimulated genes expression in vitro. Four PA substitutions, H1N1 I38L/T, E199D, and B G199R, significantly reduced the sensitivity of the recombinant viruses to baloxavir (14.1-fold). We confirmed our findings by using the luciferase-based ribonucleoprotein minigenome assay and by using virus yield reduction assay in Calu-3 and normal human bronchial epithelial (NHBE) cells. We observed that I38L and E199D resulted in decreased viral replication of the H1N1 wild-type virus (1.4-fold) but the H1N1 I38T and B G199R substitutions did not significantly alter replication capacity in Calu-3 cells. In addition, H1N1 variants with PA I38L/T and E199D induced significantly higher levels of IFNB1 gene expression compared to the wild-type virus (4.2-fold). In contrast, the B variant, G199R, triggered the lowest levels of IFN genes in Calu-3 cells (1.6-fold). Because baloxavir is a novel anti-influenza therapeutic agent, identifying and characterizing substitutions associated with reduced sensitivity to baloxavir, as well as the impact of these substitutions on viral fitness, is paramount to the strategic implementation of this novel countermeasure.

54 ENVIRONMENTAL SCIENCES↗

ORNL Input to GDSA Repository Systems Analysis FY21

This document satisfies the M3 milestone M3SF-21OR010304082 titled “ORNL Input to GDSA Repository Systems.” This document describes the current status of Oak Ridge National Laboratory’s (ORNL’s) efforts related to analyses of dual-purpose canister (DPC) disposal in unsaturated alluvium with a focus on thermal hydrological constraints on criticality timing and power output. This analysis updates previous analyses of thermal hydrological constraints on timing and power output of a potential criticality event in Dual-Purpose Canisters (DPCs) in a hypothetical repository in unsaturated alluvium using a more realistic representation of heat transport inside dry DPCs. PFLOTRAN was used for the simulations of multiphase thermal hydrology near a single DPC. The scenario considers a DPC failure at 9000 years, allowing water to enter and eventually fill the DPC. Once the DPC is filled to a level that could support a criticality event, different values for criticality power output were added to the decay heat. The main objective is to bound the power output that could be produced by a criticality event without driving water out of the package. For the conditions analyzed here, following a package breach, the alluvial formation could supply enough water to allow enough accumulation in the DPC to support a criticality event. However, the power output that would be generated is limited to modest values by loss of water moderator due to evaporation and vapor diffusion. In the reference case scenario, the DPC would not start to fill with water until about 16,000 years post closure and would not fill to a level that allows a criticality event until approximately 25,000 years post closure. The long-term average power output that could be sustained without driving off the water and terminating the criticality event is limited to approximately 100 W. Sensitivity to assumed conditions and parameters in the reference case, especially the deep percolation rate, need to be addressed but could not be undertaken because of numerical failures of the PFLOTRAN code running in general mode in the dry conditions of an unsaturated alluvium repository

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗