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At least 55 records · Page 3
All sourcesNASA NTRSDOE OSTI
NASA NTRS2013

Carbon in the Universe

Over the past few decades, NASA missions have revealed that we live in a Universe that is not a hydrogen-dominated, physicist's paradise, but in a molecular Universe with complex molecules directly interwoven into its fabric. These missions have shown that molecules are an abundant and important component of astronomical objects at all stages of their evolution and that they play a key role in many processes that dominate the structure and evolution of galaxies. Closer to home in our galaxy, the Milky Way, they have revealed a unique and complex organic inventory of regions of star and planet formation that may well represent some of the prebiotic roots to life. Astrobiology emerges from the great interest in understanding astrochemical evolution from simple to complex molecules, especially those with biogenic potential and the roles they may play as primordial seeds in the origin of life on habitable worlds. The first part of this talk will highlight how infrared spectroscopic studies of interstellar space, combined with dedicated laboratory simulations, have revealed the widespread presence of complex organics across deep space. The remainder of the presentation will focus on the evolution of these materials and astrobiology.

Astrobiology↗
NASA NTRS2020

Inter-species molecular attraction effect in the development of a two-species mixing layer

Simulations of fluid mixing occurring at high-pressures mandate the use of real-fluid equations of state to capture the effect of boh intermolecular repulsive forces and attractive forces which are neglected in perfect gases. Dedicated mixing rules account for these forces by providing a generic mapping of the mixture state-space onto a pure fluid domain. However, the specific inter-species molecular forces depend on the particular characteristics of the molecular pairs under consideration, and typically require the knowledge of binary interaction coefficients k_{αβ}. The impact of k_{αβ} on a flow field is as of now unclear; further, k_{αβ} is unknown for many molecular pairs and when unknown, set to be null. This study addresses the impact of k_{αβ} on the temporal evolution of a real-fluid mixing layer and uses Direct Numerical Simulation (DNS) to explore this impact. The results show differences between augmented attraction (k_{αβ}<0) and diminished attraction (k_{αβ}>0), affecting both fluid dynamics and diffusion processes. Specifically, in a binary mixing layer, it is observed that augmented attraction leads to delayed transition and mixing layer growth, manifested in the momentum layer thickness. The fractal dimension, which is a manifestation of interface corrugation, is calculated. These results provide an hitherto undocumented mechanism affecting the development of mixing layers.

Banuti, Daniel↗
NASA NTRS2018

Enabling Experimental Evolution: Multi-Parameter Sensor System Integration into a Culture/Stressor Biofluidics System

Experimental evolution (EE) exposes microbial communities to ecological stressors, simulating dynamics up to near-extinction events. Combined with comparative sequencing and other molecular tools, such data can inform the genetic and other biological mechanisms underlying extremophile adaptation, and other observed effects. Automating this type of experiment using biofluidics can mitigate many traditional obstacles, including delays in assay results and environment adjustment and the need for many replicates. A first-generation device for automating EE procedures, the Automated Adaptive Directed Evolution Chamber (AADEC), was developed at NASA Ames. UV-C radiation was the stressor, an LED-photodiode array measured optical density, magnetic agitation and peristaltic pump systems ensured nutrient availability, and Arduino microcontrollers provided control. Escherichia coli in LB kanamycin media was used for testing and performance verification. A manual laboratory procedure with timed exposure to UV-C was performed to typify tolerance acquisition. Approximately a 106 factor increase in survival ratio was recorded over multiple iterations. Currently, a second-generation device is being developed integrating more real-time sensors: redox potential (ORP), indicating available/consumed metabolic energy; dissolved oxygen (DO), indicating aerobic/anaerobic growth; pH, indicating metabolic products; and electrical conductivity (EC), another indicator of metabolic products. The EC sensor system was constructed and calibrated in-house and matched commercial sensors in the required range. A Raspberry Pi computer automated the electrical system, allowing real-time data acquisition. The fluidics card was made of CNC-milled polycarbonate for biocompatibility. Each sensor parameter can also be used as a selection pressure alone or in combination with others to create extreme microbial environments. As a proof of concept, this work demonstrated sensor operation in one pair of growth-sensor chambers. It can be expanded to a multi-chamber system to enable inter-culture comparisons and multi-population studies. The prior Arduino system will be ported to the RPi system. Future stressors to be added include thermal, reactive oxygen species, and varying nutrient availability.

Govinda Raj, Chinmayee↗
NASA NTRS1998

The Unidentified Infrared Emission Bands: Identified

The so-called Unidentified Infrared or simply UIR bands, the infrared emission band spectrum associated with a wide variety of interstellar objects, can be modeled in detail by laboratory spectra of neutral and positively charged polycyclic aromatic hydrocarbon (PAH) mixtures. Fits are presented for the UIR emission from the protoplanetary nebula IRAS 22272+5435, the diffuse galactic medium, and the Orion HII/photodissociation front - a selection of objects which span the evolutionary range of interstellar material. These data directly address the spectroscopic criticisms previously leveled at the PAH hypothesis and demonstrate that PAH-related molecular species are indeed responsible for this widespread emission. Furthermore, these fits reflect the structure, abundance, and ionization state of the interstellar PAHs and, in turn, provide direct insight into the processes of carbon nucleation, growth and evolution in circumstellar shells and the interstellar medium. To date, no other candidate material which has been proposed to account for the UIR emission can as readily and specifically reproduce these spectral variations. Given the ubiquity of these species, this work demonstrates the tremendous potential of these species as probes of a new and heretofore largely unexplored facet of astrochemistry - potential which should make PAHs the probe of the next millennium much as CO has been for the last quarter century.

Hudgins, Douglas M.↗
NASA NTRS2011

Post-Fragmentation Whole Genome Amplification-Based Method

This innovation is derived from a proprietary amplification scheme that is based upon random fragmentation of the genome into a series of short, overlapping templates. The resulting shorter DNA strands (<400 bp) constitute a library of DNA fragments with defined 3 and 5 termini. Specific primers to these termini are then used to isothermally amplify this library into potentially unlimited quantities that can be used immediately for multiple downstream applications including gel eletrophoresis, quantitative polymerase chain reaction (QPCR), comparative genomic hybridization microarray, SNP analysis, and sequencing. The standard reaction can be performed with minimal hands-on time, and can produce amplified DNA in as little as three hours. Post-fragmentation whole genome amplification-based technology provides a robust and accurate method of amplifying femtogram levels of starting material into microgram yields with no detectable allele bias. The amplified DNA also facilitates the preservation of samples (spacecraft samples) by amplifying scarce amounts of template DNA into microgram concentrations in just a few hours. Based on further optimization of this technology, this could be a feasible technology to use in sample preservation for potential future sample return missions. The research and technology development described here can be pivotal in dealing with backward/forward biological contamination from planetary missions. Such efforts rely heavily on an increasing understanding of the burden and diversity of microorganisms present on spacecraft surfaces throughout assembly and testing. The development and implementation of these technologies could significantly improve the comprehensiveness and resolving power of spacecraft-associated microbial population censuses, and are important to the continued evolution and advancement of planetary protection capabilities. Current molecular procedures for assaying spacecraft-associated microbial burden and diversity have inherent sample loss issues at practically every step, particularly nucleic acid extraction. In engineering a molecular means of amplifying nucleic acids directly from single cells in their native state within the sample matrix, this innovation has circumvented entirely the need for DNA extraction regimes in the sample processing scheme.

Benardini, James↗
NASA NTRS2022

GJ 229B: Solving the Puzzle of the First Known T Dwarf with the APOLLO Retrieval Code

GJ 229B was the first T dwarf to be discovered in 1995, and its spectrum has been more thoroughly observed than that of most other brown dwarfs. Yet a full spectroscopic analysis of its atmosphere has not been done with modern techniques. This spectrum has several peculiar features, and recent dynamical estimates of GJ 229B’s mass and orbit have disagreed widely, both of which warrant closer investigation. With a separation of tens of astronomical units from its host star, GJ 229B falls near the border of the planet and stellar population formation regimes, so its atmosphere could provide clues to formation processes for intermediate objects of this type. In an effort to resolve these questions, we performed retrievals on published spectra of GJ 229B over a wide range of wavelengths (0.5–5.1 μm) using the open-source APOLLO code. Based on these retrievals, we present a more precise mass estimate of 41.6 ± 3.3MJ and an effective temperature estimate of 869 +5 −7 K, which are more consistent with evolutionary models for brown dwarfs and suggest an older age for the system of >1.0 Gyr. We also present retrieved molecular abundances for the atmosphere, including replicating the previously observed high CO abundance, and discuss their implications for the formation and evolution of this object. This retrieval effort will give us insight into how to study other brown dwarfs and directly imaged planets, including those observed with JWST and other next-generation telescopes.

Alex R Howe↗
NASA NTRS1995

Other Planetary Systems: The View From Our Neighborhood

The structure and contents of the Solar System offer an initial model for other planetary systems in this and other galaxies. Our knowledge of the bodies in the Solar System and their physical conditions has grown enormously in the three decades of planetary exploration. Parallel to the uncovering of new facts has been a great expansion of our understanding of just how these conditions came to be. Telescopic studies and missions to all the planets (except Pluto) have shown spectacular and unexpected diversity among those planets, their satellites, the asteroids, and the comets. Highlights include the organic-rich crust of comets, volcanic activity on planetary satellites, randomly oriented magnetic fields of the major planets, the existence of a huge population of planetesimals just beyond Neptune, dramatic combinations of exogenic and endogenic forces shaping the solid bodies throughout the Solar System, and much more. Simultaneously, computational, laboratory, and conceptual advances have shown that the Solar System is not fully evolved either dynamically or chemically. The discovery of clearly identified interstellar (presolar) material in the meteorites and comets connects us directly with the matter in the molecular cloud from which the Solar System originated. At the same time, an increased understanding of the chemistry of comets and the impact history of the planets has demonstrated the dependence of the origin and evolution of life on Earth on powerful exogenic factors. This presentation summarizes some of the new knowledge of the Solar System and proposes specific character ist ics that may be observed in (or used as criteria for identification of) extrasolar planetary systems.

Cruikshank, Dale P.↗
NASA NTRS1988

The evoluation of young stellar object disks and their environment

By carrying out direct imaging and spectroscopic observations of young, pre-main sequence stars in nearby molecular clouds researchers have begun: to define the frequency with which disks of approximately solar system size and mass form around young stars, and to understand the timescale for disk evolution; to characterize the early radiation (ultraviolet and keV particle) environment of circumstellar disks through study of evolution of stellar winds, wind/disk interactions and the UV and optical emission characteristics of young stars; and to understand the evolution of the solid and gaseous constituents of disks through observations of absorption features in circumstellar gas, broad emission features produced by organic compounds on grain surfaces, and absorption features (e.g., ice) produced in grain mantles. These programs offer the possibilty of relating results from astrophysical studies of the environment to newly-formed stars to the record of planet formation preserved in the solar system. Researchers completed a spectroscopic survey of 30 T Tauri stars with ages ranging from approximately 2 x 10 to the 5th power to 3 x 10 to the 7th power years. From analysis of (OI) and (SII) emission lines, it was concluded that all but two of the stars in our sample are surrounded by optically opaque disks of dimension approximately 50 AU. The two remaining objects show evidence consistent with partial disk clearing (at an age approximately 3 x 10 to the 6th power year). R and I band CFHT observations yielded detections of disks of dimension approximately 100 AU surrounding 5 additional T Tauri stars.

Strom, Stephen E.↗
NASA NTRS1994

Hubble Space Telescope observations of planetary nebulae in the magellanic clouds. 2: SMP 85, a young planetary

We have obtained Hubble Space Telescope Planetary Camera images in the (O III) lambda 5007 A emission line, and Faint Object Spectrograph (FOS) UV spectrophotometry of the low-excitation planetary nebula SMP 85 in the Large Magellanic Cloud. By combining these results with existing optical spectrophotometry, absolute flux measurements, and dynamical and density information, we have been able to construct a fully self-consistent nebular model. This proves that SMP 85 is a dense, young, carbon-rich object which started to be ionized about 500-1000 years ago, and which contains a substantial inner reservoir of atomic or molecular gas, probably in the form of many small cloudlets. These cloudlets have been ejected at a velocity not exceeding 6 km/s, a result which, together with the morphology is an important clue to mass loss during late asymptotic giant branch (AGB) evolution. We have directly detected the central star through its UV continuum emission, and from both Zanstra techniques and nebular modeling derive a stellar temperature of 46000 +/- 2000 K, a stellar luminosity of 7300 +/- 700 solar luminosity, and a core mass of 0.63-0.67 solar mass. The nebular analysis also demonstrates that there is severe depletion of the nebular gases onto dust grains, most likely of the calcium magnesium silicate variety; a surprising result in view of the carbon-rich nature of the ionized nebula.

Dopita, Michael A.↗
NASA NTRS1991

Template-directed synthesis of oligonucleotides under eutectic conditions

One of the most important sets of model prebiotic experiments consists of reactions that synthesize complementary oligonucleotides from preformed templates under nonenzymatic conditions. Most of these experiments are conducted at 4 degrees C using 0.01-0.1 M concentrations of activated nucleotide monomer and template (monomer equivalent). In an attempt to extend the conditions under which this type of reaction can occur, we have concentrated the reactants by freezing at -18 degrees C, which is close to the NaCl-H2O eutectic at -21 degrees C. The results from this set of experiments suggest that successful syntheses can occur with poly(C) concentrations as low at 5 x 10(-4) M and 2MeImpG concentrations at 10(-3) M. It was also anticipated that this mechanism might allow the previously unsuccessful poly(A)-directed synthesis of oligo(U)s to occur. However, no template effect was seen with the poly(A) and ImpU system. The failure of these conditions to allow template-directed synthesis of oligo(U)s supports the previously proposed idea that pyrimidines may not have been part of the earliest genetic material. Because of the low concentrations of monomer and template that would be expected from prebiotic syntheses, this lower temperature could be considered a more plausible geologic setting for template-directed synthesis than the standard reaction conditions.

NASA Discipline Number 52-20↗
NASA NTRS1999

A molecular description of the evolution of resistance

BACKGROUND: In vitro evolution has been used to obtain nucleic acid molecules with interesting functional properties. The evolution process usually is carried out in a stepwise manner, involving successive rounds of selection, amplification and mutation. Recently, a continuous in vitro evolution system was devised for RNAs that catalyze the ligation of oligonucleotide substrates, allowing the evolution of catalytic function to be studied in real time. RESULTS: Continuous in vitro evolution of an RNA ligase ribozyme was carried out in the presence of a DNA enzyme that was capable of cleaving, and thereby inactivating, the ribozyme. The DNA concentration was increased steadily over 33.5 hours of evolution, reaching a final concentration that would have been sufficient to inactivate the starting population in one second. The evolved population of ribozymes developed resistance to the DNA enzyme, reducing their vulnerability to cleavage by 2000-fold but retaining their own catalytic function. Based on sequencing and kinetic analysis of the ribozymes, two mechanisms are proposed for this resistance. One involves three nucleotide substitutions, together with two compensatory mutations, that alter the site at which the DNA enzyme binds the ribozyme. The other involves enhancement of the ribozyme's ability to bind its own substrate in a way that protects it from cleavage by the DNA enzyme. CONCLUSIONS: The ability to direct the evolution of an enzyme's biochemical properties in response to the behavior of another macromolecule provides insight into the evolution of resistance and may be useful in developing enzymes with novel or enhanced function.

Non-NASA Center↗
NASA NTRS1974

Microbial detection method based on sensing molecular hydrogen

A simple method for detecting bacteria, based on the time of hydrogen evolution, was developed and tested against various members of the Enterobacteriaceae group. The test system consisted of (1) two electrodes, platinum and a reference electrode, (2) a buffer amplifier, and (3) a strip-chart recorder. Hydrogen evolution was measured by an increase in voltage in the negative (cathodic) direction. A linear relationship was established between inoculum size and the time hydrogen was detected (lag period). Lag times ranged from 1 h for 1 million cells/ml to 7 h for 1 cell/ml. For each 10-fold decrease in inoculum, length of the lag period increased 60 to 70 min. Based on the linear relationship between inoculum and lag period, these results indicate the potential application of the hydrogen-sensing method for rapidly detecting coliforms and other gas-producing microorganisms in a variety of clinical, food, and other samples.

Wilkins, J. R.↗
NASA NTRS1991

LinkFinder: An expert system that constructs phylogenic trees

An expert system has been developed using the C Language Integrated Production System (CLIPS) that automates the process of constructing DNA sequence based phylogenies (trees or lineages) that indicate evolutionary relationships. LinkFinder takes as input homologous DNA sequences from distinct individual organisms. It measures variations between the sequences, selects appropriate proportionality constants, and estimates the time that has passed since each pair of organisms diverged from a common ancestor. It then designs and outputs a phylogenic map summarizing these results. LinkFinder can find genetic relationships between different species, and between individuals of the same species, including humans. It was designed to take advantage of the vast amount of sequence data being produced by the Genome Project, and should be of value to evolution theorists who wish to utilize this data, but who have no formal training in molecular genetics. Evolutionary theory holds that distinct organisms carrying a common gene inherited that gene from a common ancestor. Homologous genes vary from individual to individual and species to species, and the amount of variation is now believed to be directly proportional to the time that has passed since divergence from a common ancestor. The proportionality constant must be determined experimentally; it varies considerably with the types of organisms and DNA molecules under study. Given an appropriate constant, and the variation between two DNA sequences, a simple linear equation gives the divergence time.

Inglehart, James↗
NASA NTRS1994

Continuous in vitro evolution of bacteriophage RNA polymerase promoters

Rapid in vitro evolution of bacteriophage T7, T3, and SP6 RNA polymerase promoters was achieved by a method that allows continuous enrichment of DNAs that contain functional promoter elements. This method exploits the ability of a special class of nucleic acid molecules to replicate continuously in the presence of both a reverse transcriptase and a DNA-dependent RNA polymerase. Replication involves the synthesis of both RNA and cDNA intermediates. The cDNA strand contains an embedded promoter sequence, which becomes converted to a functional double-stranded promoter element, leading to the production of RNA transcripts. Synthetic cDNAs, including those that contain randomized promoter sequences, can be used to initiate the amplification cycle. However, only those cDNAs that contain functional promoter sequences are able to produce RNA transcripts. Furthermore, each RNA transcript encodes the RNA polymerase promoter sequence that was responsible for initiation of its own transcription. Thus, the population of amplifying molecules quickly becomes enriched for those templates that encode functional promoters. Optimal promoter sequences for phage T7, T3, and SP6 RNA polymerase were identified after a 2-h amplification reaction, initiated in each case with a pool of synthetic cDNAs encoding greater than 10(10) promoter sequence variants.

Non-NASA Center↗
NASA NTRS1996

Evidence for the Evolution of Grain Properties in the NGC 2024 Star Forming Ridge

High-resolution images of the NGC 2024 molecular ridge in CS(2-1) and 3 mm continuum emission have been obtained using the Owens Valley millimeter array. The data are used to determine the temperature and dynamics of the ridge, and to ascertain the evolutionary state of the embedded protostars FIR2-7. Dust continuum emission is detected from all six FIR sources. The CS(2-1) follows the ridge closely, but does not always coincide with the FIR sources. Direct comparison of column density estimates derived from the CS and the dust emission in the ridge shows that for all FIR sources except FIR5 both methods are in agreement to within a factor of two, assuming a dust opacity k(sub 3 mm) = 0.01 cm(exp 2)/g. However, away from the FIR sources strong CS(1-0) emission is observed in several compact clumps which, with the above dust opacity, should have been detected in 3 mm dust continuum. The brightness temperature of the CS, approx. 40 K, rules out the possibility that the high line-to-continuum ratio is due to low gas temperatures; the discrepancy can be resolved if k(sub 3 mm) is a factor of 10 lower away from the FIR sources. A new high-resolution image of the 450-micron dust continuum emission obtained using the James Clerk Maxwell Telescope supports this hypothesis. These results suggest an evolution in the physical properties of the dust grains, possibly grain size, between quiescent regions in the ridge and the sites of active star formation.

Chandler, C. J.↗
NASA NTRS1997

Entropy and charge in molecular evolution--the case of phosphate

Biopoesis, the creation of life, implies molecular evolution from simple components, randomly distributed and in a dilute state, to form highly organized, concentrated systems capable of metabolism, replication and mutation. This chain of events must involve environmental processes that can locally lower entropy in several steps; by specific selection from an indiscriminate mixture, by concentration from dilute solution, and in the case of the mineral-induced processes, by particular effectiveness in ordering and selective reaction, directed toward formation of functional biomolecules. Numerous circumstances provide support for the notion that negatively charged molecules were functionally required and geochemically available for biopoesis. Sulfite ion may have been important in bisulfite complex formation with simple aldehydes, facilitating the initial concentration by sorption of aldehydes in positively charged surface active minerals. Borate ion may have played a similar, albeit less investigated role in forming charged sugar complexes. Among anionic species, oligophosphate ions and charged phosphate esters are likely to have been of even more wide ranging importance, reflected in the continued need for phosphate in a proposed RNA world, and extending its central role to evolved biochemistry. Phosphorylation is shown to result in selective concentration by surface sorption of compounds, otherwise too dilute to support condensation reactions. It provides protection against rapid hydrolysis of sugars and, by selective concentration, induces the oligomerization of aldehydes. As a manifestation of life arisen, phosphate already appears in an organic context in the oldest preserved sedimentary record.

NASA Discipline Exobiology↗
NASA NTRS2000

Inversion of the chordate body axis: are there alternatives?

One major morphological difference between chordates and annelids or arthropods is the opposite orientation of the nerve cord and heart. A long-standing proposal is that the chordate axis evolved by inverting the body of an ancestor with the annelid/arthropod orientation. However, the data can also be explained by a common ancestor with diffuse dorsoventral organization, followed by oppositely directed condensation of the nerve cord and relocation of the heart in the two lines.

Review, Tutorial↗
NASA NTRS1997

Destruction of Interstellar Dust

Interstellar dust is an important component of the interstellar medium. Dust grains are the dominant opacity source and thus regulate the radiative transfer in the interstellar medium. Besides the spectral characteristics of sources, dust therefore influences directly the molecular composition of clouds through photodissociation and the heating of the gas through the photoelectric effect. Furthermore, dust grains also provide surfaces for active chemistry. This paper will review the destruction of interstellar dust with an emphasis on processing by interstellar shocks. Interstellar dust is affected by a variety of processes. Stars in the late stages of their evolution form dust grains by chemical nucleation and growth and injected them into the ISM. Grains in the ISM are processed by strong shock waves which sputter, vaporize, diamondize, and shatter them. The physics of interstellar shock waves and of these destruction processes will be reviewed. The ISM is organized in a number of phases: HI and molecular clouds, warm (neutral/ionized) intercloud medium, and coroner gas. Dust destruction is dominated by supernova shock waves in the intercloud medium. Because of rapid exchange of dust and gas between the phases, the effects of this are felt through all phases. This will be briefly discussed.

Tielens, A. G. G. M.↗