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Model Inputs, Outputs, and Scripts associated with: “Spatial microbial respiration variations in the hyporheic zones within the Columbia River Basin”

This data package is associated with the publication “Spatial microbial respiration variations in the hyporheic zones within the Columbia River Basin” published in the Journal of Geophysical Research: Biogeosciences (Son et al. 2022) available at doi: 10.1029/2021JG006654. This data package includes the key model inputs/outputs of the river corridor model for the Columbia River Basin (CRB) and the model source codes, which were used in the manuscript. The model is a carbon-nitrogen-coupled river corridor model (RCM), and the model is used to quantify hyporheic zone (HZ) aerobic and anaerobic respiration at the NHDPLUS stream reach scales. The RCM used in this study combines empirical substrate models derived from observations and three microbially driven reactions to compute respiration of the HZ for each National Hydrography Dataset (NHD) reach within the CRB. The reactions in HZs of each NHD reach include anaerobic respiration and two-step anaerobic respiration via denitrification. Our HZ respiration estimates are limited to the lotic (or flowing) stream/river systems, and do not account for the respiration process in water column. Note that the RCM only simulates the HZ’s contribution to the dissolved carbon dioxide (CO2) concentrations in the streams, and the CO2 emissions to the atmosphere are not modelled. The model computes at hourly timesteps because of the fast reaction rates. The key input data of the model are exchange flux, residence time, and stream solute (dissolved organic carbon (DOC), dissolved oxygen (DO), and nitrate concentrations). These inputs are constant over time and represent long-term averaged values.This modeling framework successfully quantified HZ respiration components over multiple scales. It revealed key mechanisms driving the spatial variation of HZ aerobic and anaerobic respiration in reaches with varying hydrologic and substrate conditions. Thus, this modeling study offers a testing hypothesis in different river system (e.g., climate and biomes) for the HZ respiration processes, and can be used as a sampling design tool for large-scale HZ experimental studies.This dataset contains five folders: (1) model_inputs, (2) model_outputs, (3) Rscripts, (4) figures, and (5) model_codes. It also contains a readme, file level metadata (FLMD), and data dictionary (dd). Please see the FLMD for a list of all the files contained in this data package and descriptions for each. The model_inputs folder contains the model inputs used to drive the model simulations. The model_outputs folder contains key model output files from the river corridor model. The Rscripts folder contains the Rscripts for pre- and post- processing model results. The figures folder contains the raw figures associated with the manuscript. The model_codes folder includes key model source codes/input files. All files are .jpg, .jpeg, .out, .e, .od, .dat, .sub, .F90, .0, .R, .sbx, .cpg, .sbn, .shx, .shp, .dbf, .prj, .tfw, .tif, .xml, .pdf, or .csv.

54 ENVIRONMENTAL SCIENCES↗

Data and Scripts associated with a manuscript on ecosystem responses to wildfires in the Columbia River Basin

This data package is associated with the publication “Ecosystem leaf area, gross primary production, and evapotranspiration responses to wildfire in the Columbia River Basin” submitted to Biogeosciences (Shi et al., 2024; doi: 10.22541/au.171053013.30286044/v1). In this research, data products, leaf area index (LAI), gross primary production (GPP), and evapotranspiration (ET), from the Moderate Resolution Imaging Spectroradiometer (MODIS) are used to quantify the resistance and resilience of different ecosystem types in the Columbia River Basin (CRB). A machine learning algorithm, random forest (RF), was used to examine the impacts of precipitation, vapor pressure deficit (VPD), and burn severity from Monitoring Trends in Burn Severity (MTBS) on ecosystem resilience. The data package includes the processed MODIS data products, precipitation, VPD, and burn severity in 138 fire regions in CRB and the input files for RF model training. This data package includes six folders. The MODIS products are included in three MODIS_* folders with shell scripts for data clipping and *ncl files for data processing: (1) “/MODIS_LAI_CRB”; (2) “/MODIS_GPP_CRB”; and (3) “/MODIS_ET_CRB”. All the processed data for each fire event are NetCDF formatted. The MTBS burn severity data and the shell and *ncl scripts used for data processing are in the folder named (4) “MTBS_fire”. The ERA meteorological fields and the data processing scritps are in (5) “ERA_Var_CR”. All the scripts for figure development are in the format of *ncl and in the folder (6) “paper_scripts”. See the file ending in “flmd.csv” for a list of all files contained in this data package and descriptions for each. Tabular column headers and units are described in the data dictionary file ending in “dd.csv”.

54 ENVIRONMENTAL SCIENCES↗

Evaluation of riparian enhancement actions in the Columbia River Basin

Riparian enhancement is a common restoration technique in the Columbia River Basin (CRB) and the Pacific Northwest. However, relatively few studies have evaluated its success and even fewer studies include long-term monitoring. Forty-one riparian planting projects located in the CRB, each with a paired treatment and control reach, were evaluated in the summer of 2018 and 2019 using an extensive post-treatment (EPT) design. At each reach, we quantified woody plant abundance, richness, diversity, and vegetation and canopy cover as riparian response variables, and measured terrace height and documented individuals with bud browse, deceased, and with predator protection as potential explanatory variables. Species richness, woody plant abundance (all height classes combined and within shrub height class), and the proportion of woody plants with bud browse or deceased were all higher in treatment than control reaches. However, no significant improvements were observed for any other riparian response or explanatory variables. Implementation techniques, including invasive species removal efforts, follow-up planting, watering, and the type of restoration project (floodplain restoration and planting, in-stream restoration and planting, or solely planting) were also considered as potential explanatory variables and were found to have significant impacts on restoration response for abundance and cover variables. Further, our results suggest that planting implementation methods, site level physical factors, and time since planting all influence the success of riparian planting projects and if not addressed in restoration design and implementation can contribute to a lack of detectable response.

54 ENVIRONMENTAL SCIENCES↗

How Does Flow Alteration Propagate Across a Large, Highly Regulated Basin? Dam Attributes, Network Context, and Implications for Biodiversity

Abstract Large dams are a leading cause of river ecosystem degradation. Although dams have cumulative effects as water flows downstream in a river network, most flow alteration research has focused on local impacts of single dams. Here we examined the highly regulated Colorado River Basin (CRB) to understand how flow alteration propagates in river networks, as influenced by the location and characteristics of dams as well as the structure of the river network—including the presence of tributaries. We used a spatial Markov network model informed by 117 upstream‐downstream pairs of monthly flow series (2003–2017) to estimate flow alteration from 84 intermediate‐to‐large dams representing >83% of the total storage in the CRB. Using Least Absolute Shrinkage and Selection Operator regression, we then investigated how flow alteration was influenced by local dam properties (e.g., purpose, storage capacity) and network‐level attributes (e.g., position, upstream cumulative storage). Flow alteration was highly variable across the network, but tended to accumulate downstream and remained high in the main stem. Dam impacts were explained by network‐level attributes (63%) more than by local dam properties (37%), underscoring the need to consider network context when assessing dam impacts. High‐impact dams were often located in sub‐watersheds with high levels of native fish biodiversity, fish imperilment, or species requiring seasonal flows that are no longer present. These three biodiversity dimensions, as well as the amount of dam‐free downstream habitat, indicate potential to restore river ecosystems via controlled flow releases. Our methods are transferrable and could guide screening for dam reoperation in other highly regulated basins.

54 ENVIRONMENTAL SCIENCES↗

Quantifying Dam-Induced Fluctuations in Streamflow Frequencies Across the Colorado River Basin

Periodic fluctuations in natural streamflow are a major driver of river ecosystem dynamics and water resource management. However, most U.S. rivers are impacted both by long-term hydroclimatic trends and dams that alter flow variability. Despite these impacts, it remains largely unexplored how dams affect the dominant frequencies of natural streamflow over a highly regulated river network. We investigated the entire Colorado River Basin (CRB) to understand how the annual (10–14 months) and multi-annual (24–60 months) frequencies in natural flow regimes have been progressively altered by dams. Given the significant alteration over the CRB, we captured changes in streamflow frequencies between naturalized and observed monthly flows via wavelet analysis. Based on the similarity of changes in streamflow frequencies (annual and multi-annual) over the last 30 years, sections of the riverine network were classified into four groups. The annual frequency was relatively well preserved downstream of Hoover Dam, while showing a systematic trend of alteration downstream of Glen Canyon Dam until Hoover Dam. Meanwhile, the multi-annual frequency component was highly altered for the entire Lower Colorado main stem (i.e., downstream of Glen Canyon). We also identified dams with significant impacts on streamflow frequency by comparing wavelet coherence estimates. This study advances the notion that dams fundamentally alter river flow regimes across multiple frequencies and with varying amplitudes over time and space, with alteration propagating – or being dampened – by both hydroclimatic fluctuations and water resource management.

54 ENVIRONMENTAL SCIENCES↗

Computational discovery of a tetragonal MBene phase: diamond-shaped boron lattices, viable MAB precursors, and selective CO 2 reduction

MBenes are a class of two-dimensional transition-metal borides derived from layered MAB phases. Here, we use first-principles calculations to predict a new tetragonal MB (1 : 1) MBene phase featuring a diamond-shaped B–B lattice and systematically assess its phase stability, synthetic accessibility, and catalytic performance towards the CO 2 reduction reaction (CO 2 RR). Four tetragonal configurations are benchmarked against known hexagonal and orthorhombic phases, and a multi-tier screening identifies six robust members (CrB, FeB, MoB, WB, IrB, and PtB). Exploration of the I4/mmm MAB space reveals 11 viable precursors, including the experimentally synthesized Ir 2 ZnB 2 , which validates our screening approach. CO 2 RR free-energy diagrams show that CrB favors CH 3 OH while FeB, MoB, WB, IrB, and PtB preferentially yield HCOOH. The corresponding limiting potentials are competitive with, and in some cases superior to, those reported for state-of-the-art orthorhombic and hexagonal MBenes. These findings expand the MBene landscape by establishing a tetragonal phase with structural, synthetic, and catalytic promise.

Lu, Linguo [University of Puerto Rico, San Juan, P↗

Resolution matters when modeling climate change in headwaters of the Colorado River

The continued growth of Southwestern cities depends on reliable water export from Rocky Mountain headwaters, which provide ~85% of Colorado River Basin (CRB) streamflow. Despite being more sensitive to warming temperatures, alpine systems are simplified in the regional-scale models currently in use to plan for future water supply. We used an integrated hydrologic model that couples groundwater and surface water with snow and vegetation processes to examine the effect of topographic simplifications as a result of grid coarsening in a representative CRB headwater basin. High-resolution (100 m) simulations predicted headwater streamflow losses of 16% by 2050 while coarse-resolution (1 km) simulations predict only 12%, suggesting that regional-scale models (coarser than 1 km) likely overestimate future Colorado River Basin water supplies.

54 ENVIRONMENTAL SCIENCES↗

Can we rely on drought–ending “miracles” in the Colorado River Basin?

Unexpected and large spring precipitation events in the Colorado River Basin (CRB) that significantly alleviated an otherwise severe water shortage have been observed for over a century, such as the “Miracle May” of 2015. Although these events are often termed as “drought-busting” or “miracle events” by water managers and the media, they have not been extensively researched or characterized. In this collaborative study with water managers across the CRB, we propose a definition for these hard-to-predict, ultra-high precipitation events occurring during the late-snow or snowmelt season. This characterization provides a framework for quantifying the frequency and intensity of extreme dry-to-wet springtime transitions. Despite limitations of climate model simulations due to uncertainties and the inhomogeneous qualities, our findings suggest that such transitions may become less frequent and less intense in a warming climate. Finally, in view of the potentially wetter but less-snowy climate in the basin, the need for future research to more quantitatively assess these “miracle events” is emphasized.

54 ENVIRONMENTAL SCIENCES↗

Model Inputs, Outputs, and Scripts associated with: “Combined effects of stream hydrology and land use on basin-scale hyporheic zone denitrification in the Columbia River Basin”

This data package is associated with the publication “Combined effects of stream hydrology and land use on basin‐scale hyporheic zone denitrification in the Columbia River Basin”, published in Water Resource Research (Son et al.2022) available at https://doi.org/10.1029/2021WR031131. This data package includes the key model inputs/outputs of the river corridor model for the Columbia River Basin (CRB) and the model source codes used in the manuscript. The model is a carbon-nitrogen-coupled river corridor model (RCM), and the model is used to quantify hyporheic zone (HZ) denitrification at the NHDPLUS stream reach scales. The RCM used in this study combines empirical substrate models derived from observations and three microbially driven reactions, including two-step denitrification and aerobic respiration, are considered within the HZ. The key input data of the model are exchange flux, residence time, and stream solute (dissolved organic carbon (DOC), dissolved oxygen (DO), and nitrate concentrations). These inputs are constant over time and represent long-term averaged values. This study uses the RCM to explore the spatial patterns of HZ denitrification across reaches with different sizes and land use in the CRB. Our main objective is to use the RCM as a virtual reality model, and the machine-learning models as surrogates that encapsulate the complexities of the physics-based model while identifying the importance of different variables that are not evident in the model conceptualization. We do not include a direct comparison of the modeled HZ denitrification and measurements; however, the RCM can capture the overall spatial patterns of the HZ denitrification because the model inputs and its reaction networks are based on well-established theory and a physical-based model. The combination of the model-based predictions and a machine-learning approach (e.g., random forest) is used to improve our understanding of what variables of the model are associated with spatial patterns of the modeled denitrification across reaches with different sizes and land uses, and to develop a proxy model using measurable variables to reproduce the simulated patterns.This dataset contains five folders: (1) model_inputs, (2) model_outputs, (3) Rscripts, (4) figures, and (5) model_codes. It also contains a readme, file level metadata (FLMD), and data dictionary (dd). Please see the FLMD for a list of all the files contained in this data package and descriptions for each. The model_inputs folder contains the model inputs used to drive the model simulations. The model_outputs folder contains key model output files from the river corridor model. The Rscripts folder contains the Rscripts for pre- and post- processing model results. The figures folder contains the raw figures associated with the manuscript. The model_codes folder includes key model source codes/input files. All files are .jpg, .jpeg, .out, .e, .od, .dat, .sub, .F90, .0, .R, .sbx, .cpg, .sbn, .shx, .shp, .dbf, .prj, .tfw, .tif, .xml, .pdf, or .csv.

54 ENVIRONMENTAL SCIENCES↗

Elemental and Isotopic Yields from T Coronae Borealis: Predictions and Uncertainties

T Coronae Borealis (T CrB) is a symbiotic recurrent nova system expected to undergo its next outburst within the next 2 yr. Recent hydrodynamic simulations have predicted the nucleosynthetic yields for both carbon–oxygen (CO) and oxygen–neon (ONe) white-dwarf models, but without accounting for thermonuclear reaction rate uncertainties. We perform detailed Monte Carlo postprocessing nucleosynthesis calculations based on updated thermonuclear reaction rates and uncertainties from the 2025 evaluation. We quantify the resulting abundance uncertainties and identify the key nuclear reactions that dominate them. Our results show that both the CO and ONe nova models robustly produce characteristic CNO isotopes. More pronounced abundance differences emerge for elements with A ≥ 20. Sulfur is the most robust observational discriminator between the CO and ONe nova models, with a model-to-model difference of a factor of ≈30 and minimal sensitivity to reaction rate uncertainties. Neon, silicon, and phosphorus exhibit even larger abundance differences (factors of ≈150–250), providing strong diagnostic potential. While their predicted yields are subject to larger uncertainties, these remain smaller than the model-to-model differences, allowing these elements to serve as useful, though less precise, tracers of white-dwarf composition. Chlorine, argon, and potassium also differ between models, but the 1σ-abundance ranges for the CO and ONe models overlap, reducing their present usefulness as composition tracers. We find that only nine nuclear reactions dominate the abundance uncertainties of the most diagnostically important isotopes, and their influence is largely independent of the underlying white-dwarf composition. These results provide guidance for future experimental efforts and for interpreting ejecta compositions in the next eruption of T CrB.

Chemical Abundances↗

Variability of radiation from circumstellar grains surrounding R Coronae Borealis.

Radiation at IR wavelengths from circumstellar grains surrounding R CrB has been observed for approximately three years. Variations of flux with time have been larger at a wavelength of 3.5 microns than at 11 microns. Observations at IR and visual wavelengths of R CrB are presented in a graph. Another graph shows the change in the shape of the excess radiaton between two observations spaced by a period of about one year.

Forrest, W. J.↗

The infrared emission of Upsilon Sagittarii, 89 Hercules, and R Coronae Borealis

The 2- and 10-micron spectra are used to explore the question of whether the infrared radiation from Upsilon Sgr, 89 Her, and R CrB arises from a shell around the star or from a cool companion. No CO bands at 2 microns were seen in the spectra of any of these stars. Silicate emission was found in the spectra of Upsilon Sgr and 89 Her. The conclusions favor a shell around 89 Her, are neutral for R CrB, and encounter a dilemma for Upsilon Sgr.

Treffers, R.↗

Ultraviolet spectra of R Coronae Borealis stars

An analysis of the International Ultraviolet Explorer spectra of the R CrB-type variables R CrB, RY Sgr, XX Cam, and MV Sgr suggests that: (1) it should be possible to construct useful models for the atmospheres of these hydrogen deficient, carbon rich stars if present standards of metallic line blanketing are used; and (2) the observed wavelength dependence of the circumstellar extinction is primarily due to circumstellar grains.

Holm, A. V.↗

The dust around R Coronae Borealis type stars

Measurements taken by the International Ultraviolet Explorer spacecraft of the stars RY Sgr and R CrB have been analyzed using Mie theory. The extinction data, which show a 2400-2500 A peak, are consistent with a distribution of 5-60 nm glassy or amorphous carbon particles obscuring the stellar flux. The data are also fairly consistent with a cloud ejection model. Since the extinction data lack the commonly observed peak at 2170 A, it is proposed that this difference is due to the conditions present when the dust condenses. Interstellar carbon grains appear to originate in normal carbon stars which are carbon and hydrogen rich. In contrast, the grains around R CrB type stars seem to condense from a carbon-rich and hydrogen-poor vapor.

Hecht, J. H.↗

An interpretation of the spectral variations of Theta Coronae Borealis

Measurements are presented of the strengths and displacements of sharp absorption components of the resonance lines of Si IV, C IV, and Al III in the spectrum of Theta CrB. No evidence is found for mass loss at a detectable rate. A qualitative model of a Be star is developed. It is suggested that the spectral variations of Theta CrB are the result of changes in the rate at which magnetic flux is generated in the envelope of the star and extruded through the photosphere of the star.

Underhill, A. B.↗

Masses and radii for thirteen chromospherically active ellipsoidal variables

The amplitude of the ellipticity effect, the mass function, and the V sin i in ten long-period RS CVn SB1 binaries are used to compute limits on the masses of the two stars and the radius of the primary: zeta And, UV CrB, V1764 Cyg, V826 Her, V350 Lac, GX Lib, V1197 Ori, AP Psc, 33 Psc, and EE UMa. Explicit masses and radii are computed for three SB2 systems: BL CVn, V1817 Cyg, and TZ Tri. The primary in several is found to fill 95 percent or more of its Roche lobe. The two minima produced by the ellipticity effect are unequal in depth, with the effect largest when i is near 90 deg and the primary nearly fills its Roche lobe. The greatest inequality found, in UV CrB, was 0.08 mag.

Hall, Douglas S.↗

Multiversion software reliability through fault-avoidance and fault-tolerance

In this project we have proposed to investigate a number of experimental and theoretical issues associated with the practical use of multi-version software in providing dependable software through fault-avoidance and fault-elimination, as well as run-time tolerance of software faults. In the period reported here we have working on the following: We have continued collection of data on the relationships between software faults and reliability, and the coverage provided by the testing process as measured by different metrics (including data flow metrics). We continued work on software reliability estimation methods based on non-random sampling, and the relationship between software reliability and code coverage provided through testing. We have continued studying back-to-back testing as an efficient mechanism for removal of uncorrelated faults, and common-cause faults of variable span. We have also been studying back-to-back testing as a tool for improvement of the software change process, including regression testing. We continued investigating existing, and worked on formulation of new fault-tolerance models. In particular, we have partly finished evaluation of Consensus Voting in the presence of correlated failures, and are in the process of finishing evaluation of Consensus Recovery Block (CRB) under failure correlation. We find both approaches far superior to commonly employed fixed agreement number voting (usually majority voting). We have also finished a cost analysis of the CRB approach.

Vouk, Mladen A.↗

Cost modelling of fault-tolerant software

Costs of a simplex or single-version system are compared with fault-tolerant software systems including N-version programming (NVP), recovery block (RB), and consensus recovery block (CRB). Assuming that failures are independent, CRB followed by RB are found to be the most cost-justifiable fault-tolerant techniques. NVP is not competitive with the other two methods in terms of costs.

Mcallister, D. F.↗