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At least 523 records · Page 29

Revealing Hidden Quinones Through Diagnostic MS² Fragmentation of Peptide–Quinone Adducts

Quinones are redox-active components of natural organic matter that mediate electron transfer and influence biogeochemical processes, but many quinones in pyrogenic organic matter (PyOM) remain unresolved because they ionize poorly by mass spectrometry. Here, we present a peptide-tagging approach to improve detection of cysteine-reactive electrophiles in PyOM, with quinones expected to be a dominant subset based on reaction chemistry and selectivity experiments. A cysteine-containing peptide was used to form Michael-addition adducts, enhancing electrospray ionization and enabling untargeted screening by high-performance liquid chromatography-high-resolution tandem mass spectrometry. The method was benchmarked with five quinone standards and applied to extracts from charred plant material as a discovery-level screen for cysteine-reactive targets. We identified 98 quinone-candidate adducts (mean neutral mass ~603 Da), of which more than 70% were not detectable in native MS1 data. Among formula-assigned features, hidden quinone candidates had median (O+N)/C of 0.391 and normalized oxidation state of carbon of -0.281, consistent with relatively low polarity and low oxidation state. These results reveal a previously inaccessible pool of hidden redox-active compounds in PyOM and provide a framework for prioritizing quinone-like electrophiles for confirmation and incorporation into models of fire-driven biogeochemical cycling.

LC-MS/MS↗

FALCON: Framework for Anomaly Detection in Industrial Control Systems

Industrial Control Systems (ICS) are used to control physical processes in critical infrastructure. These systems are used in a wide variety of operations such as water treatment, power generation and distribution, and manufacturing. While the safety and security of these systems are of serious concern, recent reports have shown an increase in targeted attacks aimed at manipulating physical processes to cause catastrophic consequences. This trend emphasizes the need for algorithms and tools that provide resilient and smart attack detection mechanisms to protect ICS. In this paper, we propose an anomaly detection framework for ICS based on a deep neural network. The proposed methodology uses dilated convolution and long short-term memory (LSTM) layers to learn temporal as well as long term dependencies within sensor and actuator data in an ICS. The sensor/actuator data are passed through a unique feature engineering pipeline where wavelet transformation is applied to the sensor signals to extract features that are fed into the model. Additionally, this paper explores four variations of supervised deep learning models, as well as an unsupervised support vector machine (SVM) model for this problem. The proposed framework is validated on Secure Water Treatment testbed results. This framework detects more attacks in a shorter period of time than previously published methods.

97 - MATHEMATICS AND COMPUTING↗

A Synthetic Pathway for Producing Carbon Dots for Detecting Iron Ions Using a Fiber Optic Spectrometer

Iron detection is of growing importance in the critical minerals sector, where unwanted iron ions are typically removed during the processing of target critical metals. The ideal sensor should utilize inexpensive, scalable materials along with a low-cost, robust, and easy-to-use analysis platform. Here, we demonstrate a simple acid–base synthesis of luminescent iron-responsive carbon dots by reacting ethanolamine, phosphoric acid, and m-phenylenediamine. The carbon dots exhibit selective, iron-specific emission quenching, with the ability to detect part-per-billion levels of iron ions even in 0.1 M HCl. After benchmarking the purified materials using a commercial spectrometer, a “low-cost” process is demonstrated in which carbon dots with minimal purification are coupled with a portable fiber-optic spectrometer for analyzing iron content. Carbon dot-coated paper strips are also evaluated as another convenient platform for iron analysis. Taken together, the sensing material and platforms demonstrated here are well-suited for detecting trace quantities of iron in environmentally relevant conditions, with potential applications in tracking iron removal processes during critical mineral production as one exciting area of interest.

acid mine draining↗

Quantifying leaf symptoms of sorghum charcoal rot in images of field‐grown plants using deep neural networks

Abstract Charcoal rot of sorghum (CRS) is a significant disease affecting sorghum crops, with limited genetic resistance available. The causative agent, Macrophomina phaseolina (Tassi) Goid, is a highly destructive fungal pathogen that targets over 500 plant species globally, including essential staple crops. Utilizing field image data for precise detection and quantification of CRS could greatly assist in the prompt identification and management of affected fields and thereby reduce yield losses. The objective of this work was to implement various machine learning algorithms to evaluate their ability to accurately detect and quantify CRS in red‐green‐blue images of sorghum plants exhibiting symptoms of infection. EfficientNet‐B3 and a fully convolutional network emerged as the top‐performing models for image classification and segmentation tasks, respectively. Among the classification models evaluated, EfficientNet‐B3 demonstrated superior performance, achieving an accuracy of 86.97%, a recall rate of 0.71, and an F1 score of 0.73. Of the segmentation models tested, FCN proved to be the most effective, exhibiting a validation accuracy of 97.76%, a recall rate of 0.68, and an F1 score of 0.66. As the size of the image patches increased, both models’ validation scores increased linearly, and their inference time decreased exponentially. This trend could be attributed to larger patches containing more information, improving model performance, and fewer patches reducing the computational load, thus decreasing inference time. The models, in addition to being immediately useful for breeders and growers of sorghum, advance the domain of automated plant phenotyping and may serve as a foundation for drone‐based or other automated field phenotyping efforts. Additionally, the models presented herein can be accessed through a web‐based application where users can easily analyze their own images.

Gonzalez, Emmanuel M.↗

Artificial intelligence in cancer research, diagnosis and therapy

Artificial intelligence and machine learning techniques are breaking into biomedical research and health care, which importantly includes cancer research and oncology, where the potential applications are vast. These include detection and diagnosis of cancer, subtype classification, optimization of cancer treatment and identification of new therapeutic targets in drug discovery. While big data used to train machine learning models may already exist, leveraging this opportunity to realize the full promise of artificial intelligence in both the cancer research space and the clinical space will first require significant obstacles to be surmounted. In this Viewpoint article, we asked four experts for their opinions on how we can begin to implement artificial intelligence while ensuring standards are maintained so as transform cancer diagnosis and the prognosis and treatment of patients with cancer and to drive biological discovery.

60 APPLIED LIFE SCIENCES↗

Solar reflection of dark matter with dark-photon mediators

Abstract We consider the scattering of low-mass halo dark-matter particles in the hot plasma of the Sun, focusing on dark matter that interact with ordinary matter through a dark-photon mediator. The resulting “solar-reflected” dark matter (SRDM) component contains high-velocity particles, which significantly extend the sensitivity of terrestrial direct-detection experiments to sub-MeV dark-matter masses. We use a detailed Monte Carlo simulation to model the propagation and scattering of dark-matter particles in the Sun, including thermal effects, with special emphasis on ultralight dark-photon mediators. We study the properties of the SRDM flux, obtain exclusion limits from various direct-detection experiments, and provide projections for future experiments, focusing especially on those with silicon and xenon targets. We find that proposed future experiments with xenon and silicon targets can probe the entire “freeze-in benchmark”, in which dark matter is coupled to an ultralight dark photon, including dark-matter masses as low as 𝒪(keV). Our simulations and SRDM fluxes are publicly available.

Astronomy & Astrophysics↗

Single-dose mucosal replicon-particle vaccine protects against lethal Nipah virus infection up to 3 days after vaccination

Nipah virus (NiV) causes a highly lethal disease in humans who present with acute respiratory or neurological signs. No vaccines against NiV have been approved to date. Here, we report on the clinical impact of a novel NiV-derived nonspreading replicon particle lacking the fusion (F) protein gene (NiVΔF) as a vaccine in three small animal models of disease. A broad antibody response was detected that included immunoglobulin G (IgG) and IgA subtypes with demonstrable Fc-mediated effector function targeting multiple viral antigens. Single-dose intranasal vaccination up to 3 days before challenge prevented clinical signs and reduced virus levels in hamsters and immunocompromised mice; decreases were seen in tissues and mucosal secretions, critically decreasing potential for virus transmission. This virus replicon particle system provides a vital tool to the field and demonstrates utility as a highly efficacious and safe vaccine candidate that can be administered parenterally or mucosally to protect against lethal Nipah disease.

60 APPLIED LIFE SCIENCES↗

Feebly-interacting particles: FIPs 2020 workshop report

With the establishment and maturation of the experimental programs searching for new physics with sizeable couplings at the LHC, there is an increasing interest in the broader particle and astrophysics community for exploring the physics of light and feebly-interacting particles as a paradigm complementary to a New Physics sector at the TeV scale and beyond. FIPs 2020 has been the first workshop fully dedicated to the physics of feebly-interacting particles and was held virtually from 31 August to 4 September 2020. The workshop has gathered together experts from collider, beam dump, fixed target experiments, as well as from astrophysics, axions/ALPs searches, current/future neutrino experiments, and dark matter direct detection communities to discuss progress in experimental searches and underlying theory models for FIPs physics, and to enhance the cross-fertilisation across different fields. FIPs 2020 has been complemented by the topical workshop “Physics Beyond Colliders meets theory”, held at CERN from 7 June to 9 June 2020. This document presents the summary of the talks presented at the workshops and the outcome of the subsequent discussions held immediately after. It aims to provide a clear picture of this blooming field and proposes a few recommendations for the next round of experimental results.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Shell structure in 32P

The nuclear structure of 32P was investigated by detecting multi-γ coincidences along with charged light ions following the bombardment of an 18O target with a 30-MeV 16O beam from the Florida State University accelerator facility using the Clarion2-Trinity array of Clover γ spectrometers and GAGG (Gd-Al-Ga-garnet) scintillators for charged particles. A number of new states up to 12 MeV excitation and spins up to 9+ were observed by their γ decay patterns. Spins and parities were assigned by comparing measured γ angular distributions with polarizations inferred from Compton-scattering asymmetries between the Ge crystals in the Clover spectrometers. The new level scheme of 32P compares well with shell model calculations using the FSU cross-shell interaction and reasonably well with those using the sdpf-m interaction. In particular, structures with higher spin arise from promotion of more nucleons up to the f-p shell.

Allmond, James [ORNL] (ORCID:0000000165338721)↗

Synthesis of nanodiamonds encapsulated by zeolitic imidazole framework-8 for quantum sensing applications

Nitrogen vacancy (NV)-containing nanodiamonds are widely used in quantum sensing applications due to their high sensitivity to magnetic fields, relatively low cost, and ability to be initialized, manipulated, and read out at room temperature. Quantum sensing techniques such as optically detected magnetic resonance (ODMR) and spin relaxometry have exploited the sensitivity of the NV nanodiamonds to magnetic fields to detect a range of analytes, such as pH, metal ions, and biomolecules. However, diversifying the sensing targets accessible by NV diamond quantum sensors typically requires careful engineering of the diamond surface chemistry with stimuli-responsive functional groups. Here, a simple protocol for coating NV nanodiamonds with the zeolitic imidazole framework 8 (ZIF-8), a widely used metal-organic framework, is presented. ZIF-8 is a highly porous material that has been used as a selective sensor for gasses, metal ions, and other analytes. The material is well-characterized by x-ray diffraction, transmission electron microscopy, scanning electron microscopy, x-ray photoelectron spectroscopy, and luminescence spectroscopy. Encapsulation of NV nanodiamonds with a porous scaffold such as ZIF-8 provides a promising method for improving the selectivity for the quantum sensing of various analytes. Importantly, the ZIF-8 coating does not impact the luminescence properties of the NV diamond, which is a key readout in ODMR and spin relaxometry sensing approaches. Indeed, the ODMR spectra with and without the ZIF-8 shell is nearly identical. Moreover, the ZIF-8 coating increases the longitudinal spin relaxation time of the NV nanodiamond by a factor of 4 relative to aggregated diamond, a desirable outcome for spin relaxation-based quantum sensing. Metal-organic framework composites with nanodiamonds thus are an exciting strategy for enhancing NV nanodiamond performance in applications such as quantum sensing and quantum-enhanced nuclear magnetic resonance spectroscopy.

nitrogen vacancy nanodiamond↗

Experimental targets for dark photon dark matter

Ultralight dark photon dark matter features distinctive cosmological and astrophysical signatures and is also supported by a burgeoning direct-detection program searching for its kinetic mixing with the ordinary photon over a wide mass range. Dark photons, however, cannot necessarily constitute the dark matter in all of this parameter space. In minimal models where the dark photon mass arises from a dark Higgs mechanism, early-Universe dynamics can easily breach the regime of validity of the low-energy effective theory for a massive vector field. In the process, the dark sector can collapse into a cosmic string network, precluding dark photons as viable dark matter. We establish the general conditions under which dark photon production avoids significant backreaction on the dark Higgs and identify regions of parameter space that naturally circumvent these constraints. After surveying implications for known dark photon production mechanisms, we propose novel models that set well-motivated experimental targets across much of the accessible parameter space. We also discuss complementary cosmological and astrophysical signatures that can probe the dark sector physics responsible for dark photon production.

Dark matter↗

MeV-scale performance of water-based and pure liquid scintillator detectors

This paper presents studies of the performance of water-based liquid scintillators (WbLS) in both 1-kt and 50-kt detectors. In this work, performance is evaluated in comparison to both pure water Cherenkov detectors and a nominal model for pure scintillator detectors. Performance metrics include energy, vertex, and angular resolution, along with a metric for the ability to separate the Cherenkov from the scintillation signal as being representative of various particle identification capabilities that depend on the Cherenkov/scintillation ratio. We also modify the time profile of scintillation light to study the same performance metrics as a function of rise and decay time. We go on to interpret these results in terms of their impact on certain physics goals, such as solar neutrinos and the search for Majorana neutrinos. This work supports and validates previous results, and the assumptions made therein, and serves as a significant stepping stone to complete detector design studies by using a more detailed detector model and full reconstruction, with a primarily data-driven optical model, and fewer model assumptions. With this model, a high-coverage 50-kt detector achieves better than 10 (1)% precision on the flux of neutrinos from the Carbon-Nitrogen-Oxygen cycle with a water-based liquid scintillator (pure LS) target in five years of data taking. A 1-kt LS detector, with a conservative 50% fiducial volume of 0.5 kt, can achieve better than 5% detection. A liquid scintillator detector has sensitivity into the normal hierarchy region for Majorana neutrinos with half-life sensitivity of $T^{0νββ}_{1/2}$ > 1.4 × 10 28 years at 90% C.L. for 10 years of data taking with a Te-loaded target.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

First Measurement of Deeply Virtual Compton Scattering on the Neutron with Detection of the Active Neutron

Measuring deeply virtual Compton scattering (DVCS) on the neutron is one of the necessary steps to understand the structure of the nucleon in terms of generalized parton distributions (GPDs). Neutron targets play a complementary role to transversely polarized proton targets in the determination of the GPD E . This poorly known and poorly constrained GPD is essential to obtain the contribution of the quarks’ angular momentum to the spin of the nucleon. DVCS on the neutron was measured for the first time selecting the exclusive final state by detecting the neutron, using the Jefferson Lab longitudinally polarized electron beam, with energies up to 10.6 GeV, and the CLAS12 detector. The extracted beam-spin asymmetries, combined with DVCS observables measured on the proton, allow a clean quark-flavor separation of the imaginary parts of the Compton form factors H and E . Published by the American Physical Society 2024

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Human-in-the-loop Sensing and Control for Commercial Building Energy Efficiency and Occupant Comfort

Most of the existing heating, ventilation and air conditioning (HVAC) systems in commercial buildings operate in a conservative manner by assuming maximum occupancy in each room during pre-specified periods of the week, leading to significant energy being wasted as rooms are over-conditioned compared to the actual requirements of the occupants. Though critical, our understanding of occupancy patterns and thermal comfort needs of the occupants in commercial buildings is lacking and it is well known that both of these quantities are stochastic and time-varying, thus requiring sensing solutions to estimate them. This project had the goal of designing, implementing and evaluating a hardware and software solution to ameliorate this challenge. In particular, a depth camera (one whose pixels reveal distance from the camera as opposed to color values) placed on doorways is used to detect entrance and exit events from thermal zones in the building, and thereby estimate their occupancy levels. This information is then fed to a novel control algorithm that can, through interactions with the HVAC system, learn how to provide control inputs that maximize comfort and minimize energy waste. The resulting system represents a significant improvement over existing controllers for commercial HVAC systems and allowed us to improve our understanding of the design of future human-in-the-loop control solutions. For this solution to be feasible, the project had target metrics for its performance and cost. In particular, entrance and exit events for occupants moving about the building would need to be detected with an accuracy higher than 97%; and the resulting control inputs derived from this information would need to lead to approximately 10% energy savings compared to a schedule-based controller. Furthermore, regarding the final hardware design, the project had a target bill of materials (BOM) cost for the sensing solution of less than US$200 per unit while using less than 25W of power on average. All of these target metrics were met or exceeded by our final proposed solution. We performed evaluations by deploying the system in over 20 rooms of different types across 6 commercial buildings in Pittsburgh, PA over the course of three years, and performing targeted controlled experiments to test its performance along the different metrics. The human-in-the-loop control solutions (both hardware and software) developed through this project are expected to lead to significant improvements in the comfort and energy efficiency of HVAC systems used in commercial buildings. The insights we developed through the project pave the way to HVAC systems that can condition interior spaces according to their real-time utilization and the thermal comfort needs of the occupants, thereby reducing energy use. They also open up a new learning-based way of configuring HVAC controllers without having to manually fine-tune them for each building. These innovations can significantly increase the adoption of novel control solutions by the industry and thereby save resources and reduce costs of operation.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

Dispersion-Engineered Deep Sub-Wavelength Plasmonic Metasurfaces for Broadband Seira Applications

Surface enhanced infrared absorption (SEIRA) spectroscopy is a powerful tool in which plasmonically enhanced electromagnetic fields provide high-sensitivity molecular detection. Most SEIRA platforms operate at a single resonant frequency, which must be tuned to match that of the target molecule, and commonly rely on time-consuming lithographic techniques. This study presents a high-throughput and cost-effective plasmonic metasurface for broadband, tunable, and strong infrared signal enhancement. The platform is built upon the principle of dispersion-engineered plasmonic Fabry–Pérot (FP) nanocavity arrays. It offers 1) tight squeezing of infrared (IR) photons into deep sub-wavelength nano-volumes and 2) spectrally tunable near-field enhancements of up to ≈10 6 , two to three orders of magnitude higher than most optical metasurface systems. By coupling multilayer nano-thin film deposition and nanoskiving fabrication techniques, the dispersive FP metasurfaces can be rapidly and reproducibly constructed in a scalable and lithography-free manner. Using IR spectroscopy, the selective and sensitive label-free detection of a molecular monolayer is achieved at a range of frequencies. An enhancement factor of nearly 10 5 is measured at the carbonyl (C = O) vibrational marker band of the molecule. The confluence of high field enhancement, broadband plasmonic response, and facile fabrication makes this metasurface a promising platform for SEIRA spectroscopy.

36 MATERIALS SCIENCE↗

A striking relationship between dust extinction and radio detection in DESI QSOs: evidence for a dusty blow-out phase in red QSOs

ABSTRACT We present the first eight months of data from our secondary target programme within the ongoing Dark Energy Spectroscopic Instrument (DESI) survey. Our programme uses a mid-infrared and optical colour selection to preferentially target dust-reddened quasi-stellar objects (QSOs) that would have otherwise been missed by the nominal DESI QSO selection. So far, we have obtained optical spectra for 3038 candidates, of which ∼70 per cent of the high-quality objects (those with robust redshifts) are visually confirmed to be Type 1 QSOs, consistent with the expected fraction from the main DESI QSO survey. By fitting a dust-reddened blue QSO composite to the QSO spectra, we find they are well-fitted by a normal QSO with up to AV ∼ 4 mag of line-of-sight dust extinction. Utilizing radio data from the LOFAR Two-metre Sky Survey (LoTSS) DR2, we identify a striking positive relationship between the amount of line-of-sight dust extinction towards a QSO and the radio detection fraction, that is not driven by radio-loud systems, redshift and/or luminosity effects. This demonstrates an intrinsic connection between dust reddening and the production of radio emission in QSOs, whereby the radio emission is most likely due to low-powered jets or winds/outflows causing shocks in a dusty environment. On the basis of this evidence, we suggest that red QSOs may represent a transitional ‘blow-out’ phase in the evolution of QSOs, where winds and outflows evacuate the dust and gas to reveal an unobscured blue QSO.

79 ASTRONOMY AND ASTROPHYSICS↗

Axion dark matter detection by superconducting resonant frequency conversion

We propose an approach to search for axion dark matter with a specially designed superconducting radio frequency cavity, targeting axions with masses ma ≲ 10 -6 eV. Our approach exploits axion-induced transitions between nearly degenerate resonant modes of frequency ~ GHz. A scan over axion mass is achieved by varying the frequency splitting between the two modes. Compared to traditional approaches, this allows for parametrically enhanced signal power for axions lighter than a GHz. The projected sensitivity covers unexplored parameter space for QCD axion dark matter for 10 -8 eV ≲ ma ≲ 10 -6 eV and axion-like particle dark matter as light as ma~ 10 -14 eV.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Opportunities and Limitations of Nuclear Magnetic Resonance Spectroscopy in Astrobiology

For decades, Nuclear Magnetic Resonance (NMR) spectroscopy has been utilized as a powerful tool in various scientific disciplines, most prominently in chemistry, to determine molecular structures or monitor reactions. While well established in various fields, NMR applications in astrobiology are still unclear. This work aims to explore the potential of NMR in astrobiology, highlighting strengths but also weaknesses. We illustrate capabilities of NMR with two applications: (1) recently developed methods for position-specific carbon isotope analysis of complex organics; and (2) well-established tools for performing quantitative compositional analysis of complex organic mixtures. By utilizing samples relevant to astrobiology, specifically the amino acid valine and analogue mixtures of organics, we showcase that molecules retain a source dependent and distinct intramolecular carbon isotope fingerprint. We demonstrate that compositional sample analysis provides an independent and complementary line of evidence pointing towards the origin of a molecule or mixture. Together, these NMR tools have the potential to support life detection efforts, and aid in distinguishing between biotic and abiotic samples. Finally, we discuss sensitivity, detection limits, the portability of NMR, and propose how integration with mass-spectrometry techniques will be imperative to enable more targeted and comprehensive analyses relevant to astrobiology, including in-situ analysis but also sample return missions.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗