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At least 523 records · Page 29

Relief of autoinhibition by conformational switch explains enzyme activation by a catalytically dead paralog

Catalytically inactive enzyme paralogs occur in many genomes. Some regulate their active counterparts but the structural principles of this regulation remain largely unknown. We report X-ray structures of Trypanosoma brucei S -adenosylmethionine decarboxylase alone and in functional complex with its catalytically dead paralogous partner, prozyme. We show monomeric Tb AdoMetDC is inactive because of autoinhibition by its N-terminal sequence. Heterodimerization with prozyme displaces this sequence from the active site through a complex mechanism involving a cis -to- trans proline isomerization, reorganization of a β-sheet, and insertion of the N-terminal α-helix into the heterodimer interface, leading to enzyme activation. We propose that the evolution of this intricate regulatory mechanism was facilitated by the acquisition of the dimerization domain, a single step that can in principle account for the divergence of regulatory schemes in the AdoMetDC enzyme family. These studies elucidate an allosteric mechanism in an enzyme and a plausible scheme by which such complex cooperativity evolved.

Volkov, Oleg A.↗

Scaled laboratory experiments explain the kink behavior of the Crab Nebula jet

The remarkable discovery by the Chandra X-Ray Observatory that the Crab nebula’s jet periodically changes direction provides a challenge to our understanding of astrophysical jet dynamics. To study the physics of this jet in the laboratory for the first time, we used high-power lasers to create a plasma jet that could be directly compared with the Crab nebula jet through well-defined physical scaling laws. Here we show that such a jet generates its own embedded toroidal magnetic fields; as it moves, plasma instabilities result in multiple deflections of the propagation direction, mimicking the kink behavior that has been observed in the Crab jet. The experiment is modeled with 3-dimensional numerical simulations that show exactly how instability develops and causes the kinks and resultant changes of direction in the jet. We expect that future work along this line will have important impact on the study and understanding of fundamental astrophysical phenomena.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Explaining the Cosmic-Ray E+/(E- + E+) and Anti-P/P Ratios Using a Steady-State Injection Model

We present a model of cosmic ray (CR) injection into the Galactic space based on recent {gamma}-ray observations of supernova remnants (SNRs) and pulsar wind nebulae (PWNe) by the Fermi Large Area Telescope (Fermi) and imaging atmospheric Cherenkov telescopes (IACTs). Steady-state injection of nuclear particles and electrons (e{sup -}) from the Galactic ensemble of SNRs, and electrons and positrons (e{sup +}) from the Galactic ensemble of PWNe are assumed, with their injection spectra inferred under guidance of {gamma}-ray observations and recent development of evolution and emission models. The ensembles of SNRs and PWNe are assumed to share the same spatial distributions. Assessment of possible secondary CR contribution from dense molecular clouds interacting with SNRs is also given. CR propagation in the interstellar space is handled by GALPROP. Different underlying source distribution models and Galaxy halo sizes are employed to estimate the systematic uncertainty of the model. We show that this observation-based model reproduces the positron fraction e{sup +}/(e{sup -} + e{sup +}) and antiproton-to-proton ratio ({bar p}/p) reported by PAMELA and other previous missions reasonably well, without calling for any speculative sources. A discrepancy remains, however, between the total e{sup -} + e{sup +} spectrum measured by Fermi and our model below {approx} 20 GeV, for which the potential causes are discussed. Important quantities for Galactic CRs including their energy injection, average lifetime in the Galaxy, and mean gas density along their typical propagation path are also estimated.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Argonne explains nuclear recycling in 4 minutes

Currently, when using nuclear energy only about five percent of the uranium used in a fuel rod gets fissioned for energy; after that, the rods are taken out of the reactor and put into permanent storage. There is a way, however, to use almost all of the uranium in a fuel rod. Recycling used nuclear fuel could produce hundreds of years of energy from just the uranium we've already mined, all of it carbon-free. Problems with older technology put a halt to recycling used nuclear fuel in the United States, but new techniques developed by scientists at Argonne National Laboratory address many of those issues. For more information, visit http://www.anl.gov/energy/nuclear-energy.

25 ENERGY STORAGE↗

CARES Helps Explain Secondary Organic Aerosols

What happens when urban man-made pollution mixes with what we think of as pristine forest air? To know more about what this interaction means for the climate, the Carbonaceous Aerosol and Radiative Effects Study, or CARES, field campaign was designed in 2010. The sampling strategy during CARES was coordinated with CalNex 2010, another major field campaign that was planned in California in 2010 by the California Air Resources Board (CARB), the National Oceanic and Atmospheric Administration (NOAA), and the California Energy Commission (CEC). "We found two things. When urban pollution mixes with forest pollutions we get more secondary organic aerosols," said Rahul Zaveri, FCSD scientist and project lead on CARES. "SOAs are thought to be formed primarily from forest emissions but only when they interact with urban emissions. The data is saying that there will be climate cooling over the central California valley because of these interactions." Knowledge gained from detailed analyses of data gathered during the CARES campaign, together with laboratory experiments, is being used to improve existing climate models.

54 ENVIRONMENTAL SCIENCES↗

NREL Explains the Higher Cellulolytic Activity of a Vital Microorganism

The discovery of a new mode of action by C. thermocellum to convert biomass to biofuels is significant because the bacterium is already recognized as one of the most effective in the biosphere. Researchers found that, in addition to using common cellulase degradation mechanisms attached to cells, C. thermocellum also uses a new category of cell-free scaffolded enzymes. The new discovery will influence the strategies used to improve the cellulolytic activity of biomass degrading microbes going forward. Better understanding of this bacterium could lead to cheaper production of ethanol and drop-in fuels. Also, this discovery demonstrates that nature's biomass conversion behaviors are not fully understood and remain as opportunities for future microbial/enzyme engineering efforts.

09 BIOMASS FUELS↗

Dark Matter and Super Symmetry: Exploring and Explaining the Universe with Simulations at the LHC

The Large Hadron Collider (LHC) at CERN in Geneva, Switzerland, is one of the largest machines on this planet. It is built to smash protons into each other at unprecedented energies to reveal the fundamental constituents of our universe. The 4 detectors at the LHC record multi-petabyte datasets every year. The scientific analysis of this data requires equally large simulation datasets of the collisions based on the theory of particle physics, the Standard Model. The goal is to verify the validity of the Standard Model or of theories that extend the Model like the concepts of Supersymmetry and an explanation of Dark Matter. I will give an overview of the nature of simulations needed to discover new particles like the Higgs boson in 2012, and review the different areas where simulations are indispensable: from the actual recording of the collisions to the extraction of scientific results to the conceptual design of improvements to the LHC and its experiments.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗