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All sourcesNASA NTRSDOE OSTI
DOE OSTI2022

Unravelling the origin of extended radio emission in narrow-line Seyfert 1 galaxies with the JVLA

Narrow-line Seyfert 1 galaxies (NLS1s) are believed to be active galactic nuclei (AGN) in the early stages of their evolution. Several dozen of them have been found to host relativistic jets, whilst the majority of NLS1s have not even been detected in radio, emphasising the heterogeneity of the class in this band. In this paper, our aim is to determine the predominant source of radio emission in a sample of 44 NLS1s, selected based on their extended kiloparsec-scale radio morphologies at 5.2 GHz. Here, we accomplish this by analysing their spatially resolved radio spectral index maps, centred at 5.2 GHz, as the spectral index carries information about the production mechanisms of the emission. In addition, we utilise several diagnostics based on mid-infrared emission to estimate the star formation activity of their host galaxies. These data are complemented by archival data to draw a more complete picture of each source. We find an extraordinary diversity among our sample. Approximately equal fractions (~10–12 sources) of our sources can be identified as AGN-dominated, composite, and host-dominated. Among the AGN-dominated sources are a few NLS1s with very extended jets, reaching distances of tens of kiloparsecs from the nucleus. One of these, J0814+5609, hosts the most extended jets found in an NLS1 so far. We also identify five NLS1s that could be classified as compact steep-spectrum sources. In addition, one source shows a possible kiloparsec-scale relic that reaches well outside the host galaxy as well as restarted nuclear activity, and one could belong to the sub-class of NLS1s that host relativistic jets that seem to be absorbed at lower radio frequencies (< 10 GHz). We further conclude that, due to the variety seen in NLS1s, simple proxies, such as the star formation diagnostics also employed in this paper and the radio loudness parameter, are not ideal tools for characterising NLS1s. We emphasise the necessity of examining NLS1s as individuals instead of making assumptions based on their classification. When these issues are properly taken into account, NLS1s offer an exceptional environment for studying the interplay between the host galaxy and several AGN-related phenomena, such as jets and outflows.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2023

Ultraviolet digital holographic microscopy (DHM) of micron-scale particles from shocked Sn ejecta

A cloud of very fast, O (km/s), and very fine, O (µm), particles may be ejected when a strong shock impacts and possibly melts the free surface of a solid metal. To quantify these dynamics, this work develops an ultraviolet, long-working distance, two-pulse Digital Holographic Microscopy (DHM) configuration and is the first to replace film recording with digital sensors for this challenging application. A proposed multi-iteration DHM processing algorithm is demonstrated for automated measures of the sizes, velocities, and three-dimensional positions of non-spherical particles. Ejecta as small as 2 µm diameter are successfully tracked, while uncertainty simulations indicate that particle size distributions are accurately quantified for diameters ≥4 µm. These techniques are demonstrated on three explosively driven experiments. Measured ejecta size and velocity statistics are shown to be consistent with prior film-based recording, while also revealing spatial variations in velocities and 3D positions that have yet to be widely investigated. Having eliminated time-consuming analog film processing, the methodologies proposed here are expected to significantly accelerate future experimental investigation of ejecta physics.

47 OTHER INSTRUMENTATION↗
DOE OSTI2022

Potential State Regulatory Pathways to Facilitate Low-Carbon Fuels

States and the federal government are increasingly engaged in the challenges around decarbonizing the electric grid. In particular, regulators, consumers, stakeholders, and utilities recognize the need to carefully consider the role natural gas will play in a decarbonized future. A variety of technology and policy options to reduce greenhouse gas emissions associated with natural gas use are available, including energy efficiency programs, demand reduction tools, strategic electrification, and strategies to reduce emissions from natural gas production, transportation, and consumption. Low-carbon fuels – mainly renewable natural gas (RNG) and clean hydrogen – are being considered an important component of decarbonization goals. RNG and hydrogen may be able to meaningfully reduce emissions from processes independent of geologic natural gas, displacing emissions of methane, a powerful greenhouse gas. Although RNG and hydrogen are not cost-competitive today with geologic natural gas and are smaller in scale and potential than other decarbonization options, they can be explored as potential critical tools to decarbonize sectors that are difficult to electrify or shift off of natural gas entirely, such as air travel, industrial processes, maritime transport, long-distance trucking, space heating on cold days, and railroads (Nadel, 2022). The role of this report is to provide informational context for state utility regulators to understand the impacts of and challenges associated with broader integration of low-carbon fuels, followed by examples of state regulatory actions taken to date to facilitate the development of low-carbon fuels. Setting clear guidance to calculate the environmental benefits of low-carbon fuels and continuing federal and state investments in research and development to reduce costs relative to fossil fuels will be important steps to take to signal the desire to grow the market for these fuels. State public utility commissions may play a key role in setting regulatory frameworks for low-carbon fuels and ensuring that ratepayer funds, if utilized, are done so to further the public interest. This report is intended to summarize decisions that states have made to date on low-carbon fuels. In the spirit of understanding the current market and sharing information, this report provides success stories, and lessons learned across states as regulators implement varying strategies to achieve decarbonization objectives while maintaining their focus on affordability, safety, and reliability of the energy system. The report begins with an introduction of the role of natural gas in the U.S. economy (Section I) and background information on natural gas use, decarbonization, and low-carbon fuels (Section II). Next, the report describes the current market by discussing the scale of current production, emissions intensity, resource potential, and costs of low-carbon fuels compared to geologic natural gas (Section III). Following these sections, the report describes four strategies states have employed to facilitate low-carbon fuels: opening exploratory dockets, approving voluntary tariffs for customers, approving interconnection tariffs for producers, and considering portfolio-wide procurement targets (Section IV). This section lists states that have taken actions in each category, citing utility filings, commission decisions, stakeholder comments, and other relevant sources. Finally, the report concludes with suggested questions regulators may wish to consider regarding low-carbon fuels, in the interest of preparing to make decisions in the future (Section V). These questions include: Are there existing regulatory or technical barriers to voluntary purchases of low-carbon fuels? Can customers work with utilities to procure low-carbon fuels; are producers able to interconnect projects without significant barriers to entry? Should the infrastructure and/or commodity costs of low-carbon fuels be socialized among all ratepayers, or borne solely by the large commercial and industrial (C&I) customers currently driving the market? Should regulated natural gas and/or electric utilities own and operate low-carbon fuel production? How should regulators consider the unique decarbonization potential of low-carbon fuels, particularly for hard-to-abate sectors, in decision-making? Is additional direction or clarity from state policymakers needed? What no-regrets approaches can help facilitate both near-term RNG development and long-term development of hydrogen and other zero-carbon fuels? We collectively wish to express our gratitude to the U.S. Department of Energy, Office of Fossil Energy and Carbon Management, for supporting this report and other technical assistance resources for state regulators on natural gas topics. State regulators operate under a variety of policy environments, and states have vastly different types of energy resources, infrastructure, and customers. While there is no optimal regulatory, policy, or technological solution that will be successful in every state, state regulators can benefit by exchanging lessons learned with their peers across the country. We look forward to continued engagement with our fellow commissioners, commission staff, NARUC, the U.S. Department of Energy, and other stakeholders to develop sound regulation in the public interest.

03 NATURAL GAS↗
DOE OSTI2020

Kilometer-Scale Hydrologic Exchange Flows in a Gravel Bed River Corridor and Their Implications to Solute Migration

In this work, a well-characterized field site along a major river corridor was used to investigate the dynamic pathways and impacts of subsurface hydrogeologic structures on kilometer-scale hydrologic exchange flows between river water and groundwater. A aqueous uranium (U aq ) plume exists at the site that discharges to the Columbia River. We performed temporally intensive monitoring of specific conductance (SpC) and U aq concentrations within the plume at increasing distances from the river shoreline and at locations both within and outside a presumed subsurface pathway of lateral hydrologic exchange. Specific conductance and U aq were utilized as in-situ tracers of hydrologic exchange and associated groundwater-surface water mixing. Monitoring data was collected for an approximate two year period during which seasonal river elevations varied by more than 2 m causing distinct events of river water intrusion and retreat from the near-shore aquifer, and large temporal variations in well-water analyte concentrations. Statistical clustering analysis was applied to identify well groupings exhibiting common time series behaviors. PFLOTRAN was implemented within a modeling domain of 3.3 x 1.9 km with dynamic flow boundary conditions and accurate subsurface topography for the basal aquitard underlying the aquifer. In-silico calculations of river water tracer behavior were performed to assess predominant flow directions and velocities influenced by river stage variations and variable aquitard topography, and their collective influences on SpC and U aq concentrations. We demonstrate complicated multidirectional flow behaviors at the kilometer scale resulting from hydrologic exchange and subsurface structure that influence plume dynamics and determine the overall system behavior.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2020

A cautionary tale of attenuation in star-forming regions

ABSTRACT The attenuation of light from star-forming galaxies is correlated with a multitude of physical parameters including star formation rate, metallicity and total dust content. This variation in attenuation is even more evident on kiloparsec scales, which is the relevant size for many current spectroscopic integral field unit surveys. To understand the cause of this variation, we present and analyse Swift/UVOT near-UV (NUV) images and SDSS/MaNGA emission-line maps of 29 nearby (z < 0.084) star-forming galaxies. We resolve kiloparsec-sized star-forming regions within the galaxies and compare their optical nebular attenuation (i.e. the Balmer emission line optical depth, $\tau ^{l}_{B}\equiv \tau _{\textrm {H}\beta }-\tau _{\textrm {H}\alpha }$) and NUV stellar continuum attenuation (via the NUV power-law index, β) to the attenuation law described by Battisti et al. We show the data agree with that model, albeit with significant scatter. We explore the dependence of the scatter of the β–$\tau ^{l}_{B}$ measurements from the star-forming regions on different physical parameters, including distance from the nucleus, star formation rate and total dust content. Finally, we compare the measured $\tau ^{l}_{B}$ and β values for the individual star-forming regions with those of the integrated galaxy light. We find a strong variation in β between the kiloparsec scale and the larger galaxy scale that is not seen in $\tau ^{l}_{B}$. We conclude that the sightline dependence of UV attenuation and the reddening of β due to the light from older stellar populations could contribute to the scatter in the β–$\tau ^{l}_{B}$ relation.

Molina, Mallory↗
DOE OSTI2021

Delaying the inevitable: tidal disruption in microstate geometries

Microstate geometries in string theory replace the black-hole horizon with a smooth geometric “cap” at the horizon scale. In geometries constructed using superstratum technology, this cap has the somewhat surprising property that induces very large tidal deformations on infalling observers that are far away from it. We find that this large-distance amplification of the tidal effects is also present in horizonless microstate geometries constructed as bubbling solutions, but can be tamed by suitably arranging the bubbles to reduce the strength of some of the gravitational multipole moments. However, despite this taming, these tidal effects still become large at a significant distance from the microstructure. This result suggests that an observer will not fall unharmed into the structure replacing the black hole horizon.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2025

Differential Seismic Phase Detection Probability as a Potential Discriminant of Explosions and Earthquakes

Deep learning models trained to estimate the probability of seismic P and S phases are rapidly expanding the scale of local event detections. Here, we evaluate the potential for deep learning model output phase detection probabilities to contribute to event‐type classification, particularly discrimination of single‐fired borehole explosions and earthquakes at local distances (<300 km). Motivated by the empirical success of P/S amplitude ratios, we consider the difference between P and S pick probability output from previously developed phase detection models, P prob −S prob ⁠, as a discriminant. Test data include M L ∼1–4 earthquakes and explosions observed by common seismographs in ten geologically diverse localities. Depending on the picking model and training data, binary classification using P prob −S prob with at least three stations can achieve approximately equivalent classification accuracy as P/S amplitude ratios without requiring any customization. Joint classification with P/S and P prob −S prob improves accuracy for most quality control scenarios. Pick probabilities are an efficient attribute to consider in explosion discrimination because they can be automated byproducts of event detection. They avoid the binary choice of picking or not picking weakly visible S waves common to explosions.

Duan, Chenglong [Rice Univ., Houston, TX (United S↗
DOE OSTI2021

The UHECR dipole and quadrupole in the latest data from the original Auger and TA surface detectors

The sources of ultra-high-energy cosmic rays are still unknown, but assuming standard physics, they are expected to lie within a few hundred megaparsecs from us. Indeed, over cosmological distances cosmic rays lose energy to interactions with background photons, at a rate depending on their mass number and energy and properties of photonuclear interactions and photon backgrounds. The universe is not homogeneous at such scales, hence the distribution of the arrival directions of cosmic rays is expected to reflect the inhomogeneities in the distribution of galaxies; the shorter the energy loss lengths, the stronger the expected anisotropies. Galactic and intergalactic magnetic fields can blur and distort the picture, but the magnitudes of the largest-scale anisotropies, namely the dipole and quadrupole moments, are the most robust to their effects. Measuring them with no bias regardless of any higher-order multipoles is not possible except with full-sky coverage. In this work, we achieve this in three energy ranges (approximately $8$--$16~EeV$, $16$--$32~EeV$, and $32$--$\infty~EeV$) by combining surface-detector data collected at the Pierre Auger Observatory until 2020 and at the Telescope Array (TA) until 2019, before the completion of the upgrades of the arrays with new scintillator detectors. We find that the full-sky coverage achieved by combining Auger and TA data reduces the uncertainties on the north-south components of the dipole and quadrupole in half compared to Auger-only results.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2022

Large scale synthesis of resorcinol-formaldehyde aerogel

A product includes an aerogel having a single bulk structure, the single bulk structure having at least one dimension greater than 10 millimeters. The single bulk structure includes a plurality of pores, where each pore has a largest diameter defined as a greatest distance between pore walls of the respective pore. In addition, an average of the largest diameters of a majority of the pores is within a specified range, and the plurality of pores are distributed substantially homogenously throughout the single bulk structure.

Loeb, Colin↗
DOE OSTI2024

In‐operando thermal transport characterization of moving particle bed heat exchanger

The project aimed to develop modulated photothermal radiometry (MPR) for conducting in-operando measurements of thermal transport in moving particle bed heat exchangers (MPBE) located at Sandia National Laboratory (SNL). The plan was to initially conduct lab-scale measurements on a 1-meter-long particle channel at UCSD, followed by in- operando measurements at SNL on a 20 kWth MPBE prototype built for this project, and if time permitting, potential final deployment on SNL’s 1 MWth G3P3 MPBE. The first two goals were successfully achieved but due to changes with commissioning timeline of the G3P3 MPBE, in-operando measurements on the G3P3 MPBE could not be conducted. The measurement campaigns have resulted in some promising results and the MPR tool has been handed over to trained SNL personnel for future use. MPR measurements on UCSD’s 1-meter-long particle channel showed a peculiar length dependence of the particle bed thermal conductivity and near-wall thermal resistance. The bed thermal conductivity increased, and the near-wall thermal resistance decreased, with increasing distance from the channel inlet, both eventually reaching a plateau. This was found to be due to hydrostatic pressure screening by the channel walls, known as the “Janssen effect”, and is the first experimental study on its role in granular heat transfer. A 20 kWth small-scale MPBE prototype, the first of its kind with 3 mm particle channels and 2 mm sCO2 plates, was designed and manufactured by Vacuum Process Engineering (VPE) for this project. This MPBE prototype was installed in SNL’s HEX test stand and the MPR tool was integrated into the test stand for in-operando measurements. Several modifications have been made to the MPR setup for facile installation and easy operation at SNL. Measurements with Carbo HSP40/70 particles were conducted with various particle and sCO2 temperatures and flow rates. Further, apart from regular MPBE operation, fault scenarios such as plate warping, particle stagnation, and choking were also detected and MPR showed excellent sensitivity to the detection of such conditions. Through the course of this project, MPR has evolved from a sensitive laboratory technique to a rugged industrial tool with various applications in high temperature measurements and diagnostics.

14 SOLAR ENERGY↗
DOE OSTI2020

Nearest neighbour distributions: New statistical measures for cosmological clustering

ABSTRACT The use of summary statistics beyond the two-point correlation function to analyse the non-Gaussian clustering on small scales, and thereby, increasing the sensitivity to the underlying cosmological parameters, is an active field of research in cosmology. In this paper, we explore a set of new summary statistics – the k-Nearest Neighbour Cumulative Distribution Functions (kNN-CDF). This is the empirical cumulative distribution function of distances from a set of volume-filling, Poisson distributed random points to the k-nearest data points, and is sensitive to all connected N-point correlations in the data. The kNN-CDF can be used to measure counts in cell, void probability distributions, and higher N-point correlation functions, all using the same formalism exploiting fast searches with spatial tree data structures. We demonstrate how it can be computed efficiently from various data sets – both discrete points, and the generalization for continuous fields. We use data from a large suite of N-body simulations to explore the sensitivity of this new statistic to various cosmological parameters, compared to the two-point correlation function, while using the same range of scales. We demonstrate that the use of kNN-CDF improves the constraints on the cosmological parameters by more than a factor of 2 when applied to the clustering of dark matter in the range of scales between 10 and $40\, h^{-1}\, {\rm Mpc}$. We also show that relative improvement is even greater when applied on the same scales to the clustering of haloes in the simulations at a fixed number density, both in real space, as well as in redshift space. Since the kNN-CDF are sensitive to all higher order connected correlation functions in the data, the gains over traditional two-point analyses are expected to grow as progressively smaller scales are included in the analysis of cosmological data, provided the higher order correlation functions are sensitive to cosmology on the scales of interest.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2022

Spatial turnover of soil viral populations and genotypes overlain by cohesive responses to moisture in grasslands

Viruses shape microbial communities, food web dynamics, and carbon and nutrient cycling in diverse ecosystems. However, little is known about the patterns and drivers of viral community composition, particularly in soil, precluding a predictive understanding of viral impacts on terrestrial habitats. To investigate soil viral community assembly processes, here we analyzed 43 soil viromes from a rainfall manipulation experiment in a Mediterranean grassland in California. We identified 5,315 viral populations (viral operational taxonomic units [vOTUs] with a representative sequence ≥10 kbp) and found that viral community composition exhibited a highly significant distance–decay relationship within the 200-m 2 field site. This pattern was recapitulated by the intrapopulation microheterogeneity trends of prevalent vOTUs (detected in ≥90% of the viromes), which tended to exhibit negative correlations between spatial distance and the genomic similarity of their predominant allelic variants. Although significant spatial structuring was also observed in the bacterial and archaeal communities, the signal was dampened relative to the viromes, suggesting differences in local assembly drivers for viruses and prokaryotes and/or differences in the temporal scales captured by viromes and total DNA. Despite the overwhelming spatial signal, evidence for environmental filtering was revealed in a protein-sharing network analysis, wherein a group of related vOTUs predicted to infect actinobacteria was shown to be significantly enriched in low-moisture samples distributed throughout the field. Overall, our results indicate a highly diverse, dynamic, active, and spatially structured soil virosphere capable of rapid responses to changing environmental conditions.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2020

Non-dilute helium-related defect interactions in the near-surface region of plasma-exposed tungsten

We report a systematic energetic analysis of helium-related defect interactions that mediate helium (He) segregation on surfaces of plasma-exposed tungsten at different levels of He ion implantation. We focus on high He fluences that increase the He content in the plasma-exposed material well beyond the dilute limit of He concentration and employ atomic configurations generated by large-scale molecular dynamics simulations of He-implanted tungsten. We perform systematic molecular statics computations of cluster– defect interaction energetics in the highly defect-rich near-surface region of plasma-exposed tungsten for small mobile helium clusters as a function of the cluster distance from the surface. In this region, mobile clusters are also subjected to the stress fields generated by defects such as helium bubbles and other clusters, which govern cluster–defect interactions in addition to the cluster–surface interaction. Based on systematic investigation of individual cluster–defect interactions, we develop a mathematical framework to describe the interaction energy landscapes consisting of elastic interaction potential perturbations to finite-width square-well potentials, where the potential well accounts for cluster trapping by the defect at close range and subsequent coalescence and the perturbation potential is parameterized according to elastic inclusion theory. Superposition of all the relevant interaction potentials provides a comprehensive description of the interaction energy landscape that would be experienced by a small mobile cluster along its migration path toward the plasma-exposed surface at high He fluence. Such descriptions are particularly important for developing atomistically-informed, hierarchical multi-scale models of helium cluster dynamics in plasma-facing materials.

36 MATERIALS SCIENCE↗
DOE OSTI2020

Climate mediates continental scale patterns of stream microbial functional diversity

Understanding the large-scale patterns of microbial functional diversity is essential for anticipating climate change impacts on ecosystems worldwide. However, studies of functional biogeography remain scarce for microorganisms, especially in freshwater ecosystems. Here we study 15,289 functional genes of stream biofilm microbes along three elevational gradients in Norway, Spain and China. We find that alpha diversity declines towards high elevations and assemblage composition shows increasing turnover with greater elevational distances. These elevational patterns are highly consistent across mountains, kingdoms and functional categories and exhibit the strongest trends in China due to its largest environmental gradients. Across mountains, functional gene assemblages differ in alpha diversity and composition between the mountains in Europe and Asia. Climate, such as mean temperature of the warmest quarter or mean precipitation of the coldest quarter, is the best predictor of alpha diversity and assemblage composition at both mountain and continental scales, with local non-climatic predictors gaining more importance at mountain scale. Under future climate, we project substantial variations in alpha diversity and assemblage composition across the Eurasian river network, primarily occurring in northern and central regions, respectively. We conclude that climate controls microbial functional gene diversity in streams at large spatial scales; therefore, the underlying ecosystem processes are highly sensitive to climate variations, especially at high latitudes. This biogeographical framework for microbial functional diversity serves as a baseline to anticipate ecosystem responses and biogeochemical feedback to ongoing climate change.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2020

Measurements of electron transport in liquid and gas Xenon using a laser-driven photocathode

Measurements of electron drift properties in liquid and gaseous xenon are reported. The electrons are generated by the photoelectric effect in a semitransparent gold photocathode driven in transmission mode with a pulsed ultraviolet laser. The charges drift and diffuse in a small chamber at various electric fields and a fixed drift distance of 2.0 cm. At an electric field of 0.5 kV/cm, the measured drift velocities and corresponding temperature coefficients respectively are 1.97 ± 0.04 mm/µs and (-0.69 ± 0.05)%/K for liquid xenon, and 1.42 ± 0.03 mm/µs and (+0.11 ± 0.01)%/K for gaseous xenon at 1.5 bar. In addition, we measure longitudinal diffusion coefficients of 25.7±4.6 cm2/s and 149±23 cm2/s, for liquid and gas, respectively. The quantum efficiency of the gold photocathode is studied at the photon energy of 4.73 eV in liquid and gaseous xenon, and vacuum. These charge transport properties and the behavior of photocathodes in a xenon environment are important in designing and calibrating future large scale noble liquid detectors.

Njoya, Oumarou↗
DOE OSTI2020

On the possibility of baryon acoustic oscillation measurements at redshift z > 7.6 with the Roman space telescope

ABSTRACT The Nancy Grace Roman Space Telescope (RST), with its field of view and high sensitivity will make surveys of cosmological large-scale structure possible at high redshifts. We investigate the possibility of detecting baryon acoustic oscillations (BAO) at redshifts z > 7.6 for use as a standard ruler. We use data from the hydrodynamic simulation bluetides in conjunction with the gigaparsec-scale Outer Rim simulation and a model for patchy reionization to create mock RST High Latitude Survey grism data for Lyman α emission line selected galaxies at redshifts z = 7.4 to z = 10, covering 2280 deg2. We measure the monopoles of galaxies in the mock catalogues and fit the BAO features. We find that for a line flux of $L = 7\times 10^{-17} \ {\rm erg\, s^{-1}\, cm}^{-2}$, the 5σ detection limit for the current design, the BAO feature is partially detectable (measured in three out of four survey quadrants analysed independently). The resulting root mean square error on the angular diameter distance to z = 7.7 is 7.9 ${{\ \rm per\ cent}}$. If we improve the detection sensitivity by a factor of two (i.e. $L = 3.5\times 10^{-17} \ {\rm erg\, s^{-1}\, cm}^{-2}$), the distance error reduces to $1.4{{\ \rm per\ cent}}$. We caution that many more factors are yet to be modelled, including dust obscuration, the damping wing due to the intergalactic medium, and low redshift interlopers. If these issues do not strongly affect the results, or different observational techniques (such as use of multiple lines) can mitigate them, RST, or similar instruments may be able to constrain the angular diameter distance to the high redshift universe.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2024

Chromosome-level genome assemblies and genetic maps reveal heterochiasmy and macrosynteny in endangered Atlantic Acropora

Abstract Background Over their evolutionary history, corals have adapted to sea level rise and increasing ocean temperatures, however, it is unclear how quickly they may respond to rapid change. Genome structure and genetic diversity contained within may highlight their adaptive potential. Results We present chromosome-scale genome assemblies and linkage maps of the critically endangered Atlantic acroporids,Acropora palmataandA. cervicornis. Both assemblies and linkage maps were resolved into 14 chromosomes with their gene content and colinearity. Repeats and chromosome arrangements were largely preserved between the species. The family Acroporidae and the genusAcroporaexhibited many phylogenetically significant gene family expansions. Macrosynteny decreased with phylogenetic distance. Nevertheless, scleractinians shared six of the 21 cnidarian ancestral linkage groups as well as numerous fission and fusion events compared to other distantly related cnidarians. Genetic linkage maps were constructed from oneA. palmatafamily and 16A. cervicornisfamilies using a genotyping array. The consensus maps span 1,013.42 cM and 927.36 cM forA. palmataandA. cervicornis, respectively. Both species exhibited high genome-wide recombination rates (3.04 to 3.53 cM/Mb) and pronounced sex-based differences, known as heterochiasmy, with 2 to 2.5X higher recombination rates estimated in the female maps. Conclusions Together, the chromosome-scale assemblies and genetic maps we present here are the first detailed look at the genomic landscapes of the critically endangered Atlantic acroporids. These data sets revealed that adaptive capacity of Atlantic acroporids is not limited by their recombination rates. The sister species maintain macrosynteny with few genes with high sequence divergence that may act as reproductive barriers between them. In the AtlanticAcropora, hybridization between the two sister species yields an F1 hybrid with limited fertility despite the high levels of macrosynteny and gene colinearity of their genomes. Together, these resources now enable genome-wide association studies and discovery of quantitative trait loci, two tools that can aid in the conservation of these species.

Biotechnology & Applied Microbiology↗
DOE OSTI2024

Isolation of individual Er quantum emitters in anatase TiO 2 on Si photonics

Defects and dopant atoms in solid state materials are a promising platform for realizing single photon sources and quantum memories, which are the basic building blocks of quantum repeaters needed for long distance quantum networks. In particular, trivalent erbium (Er 3+ ) is of interest because it couples C-band telecom optical transitions with a spin-based memory platform. In order to produce quantum repeaters at the scale required for quantum networks it is imperative to integrate these necessary building blocks with mature and scalable semiconductor processes. Here, in this work, we demonstrate the optical isolation of single Er 3+ ions in CMOS-compatible titanium dioxide (TiO 2 ) thin films monolithically integrated on a silicon-on-insulator photonics platform. Our results demonstrate an initial step toward the realization of a monolithically integrated and scalable quantum photonics package based on Er 3+ doped thin films.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗