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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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DOE OSTI2023

Allometric-kinetic model predictions of concentration ratios for anthropogenic radionuclides across animal classes and food selection

Protection of the environment from radiation fundamentally relies on dose assessments for non-human biota. These dose assessments use measured or predicted concentrations of radionuclides in soil or water combined with Concentration Ratios (CRs) to estimate tissue concentrations in animals and plants, yet there is a paucity of CR data relative to the vast number of potential taxa and radioactive contaminants in the environment and their taxon-specific ecosystems. Because there are many taxa each having very different behaviors and biology and many possible bioavailable radionuclides, CRs have the potential to vary by orders-of-magnitude, as often seen in published data. Given the diversity of taxa, the International Commission on Radiological Protection (ICRP) has categorized non-human biota into 12 representative organisms (ROs), while the U.S. Department of Energy (DOE) uses the non-taxon specific categories of terrestrial, riparian, and aquatic animals. The question we examine here is: do these categorizations adequately “represent” the broad diversity of animals? To explore this question, here we analyze an Allometric-Kinetic (A-K) model to calculate radionuclide-specific CRs for common animal classes which are then further subcategorized into herbivores, omnivores, carnivores, and invertebrate detritivores. Comparisons in CRs among animal classes exhibited only small differences, but there was order of magnitude differences between herbivores, carnivores, and especially detritivores, for many radionuclides of interest. These findings suggest that the ICRP ROs and the DOE categories are reasonable, but their accuracy could be improved by including sub-categories related to animal dietary ecology. Finally, comparisons of A-K model predicted CR values to published CRs show order-of-magnitude variations, providing justification for additional studies of assimilation across radionuclides and animal classes.

63 RADIATION, THERMAL, AND OTHER ENVIRON. POLLUTAN↗

DOE OSTI2022

Cosmological constraints on dark matter interactions with ordinary matter

Dark matter interactions with electrons or protons during the early Universe leave imprints on the cosmic microwave background and the matter power spectrum, and can be probed through cosmological and astrophysical observations. These interactions lead to momentum and heat exchange between the ordinary and dark matter components, which in turn results in a transfer of pressure from the ordinary to the dark matter. Here, we explore these interactions using a diverse suite of data: cosmic microwave background anisotropies, baryon acoustic oscillations, the Lyman-α forest, and the abundance of Milky-Way subhalos. We derive constraints using model-independent parameterizations of the dark matter–electron and dark matter–proton interaction cross sections and map these constraints onto concrete dark matter models. Our constraints are complementary to other probes of dark matter interactions with ordinary matter, such as direct detection, big bang nucleosynthesis, various astrophysical systems, and accelerator-based experiments. They exclude sufficiently large cross sections for a large range of dark matter masses, which cannot be accessed by direct-detection experiments due to the overburden from the Earth’s atmosphere or crust.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2011

A Combined Global and Local Approach to Elucidate Spatial Organization of the Mycobacterial ParB-parS Partition Assembly

Combining diverse sets of data at global (size, shape) and local (residue) scales is an emerging trend for elucidating the organization and function of the cellular assemblies. We used such a strategy, combining data from X-ray and neutron scattering with H/D-contrast variation and X-ray footprinting with mass spectrometry, to elucidate the spatial organization of the ParB-parS assembly from Mycobacterium tuberculosis. The ParB-parS participates in plasmid and chromosome segregation and condensation in predivisional bacterial cells. ParB polymerizes around the parS centromere(s) to form a higher-order assembly that serves to recruit cyto-skeletal ParA ATPases and SMC proteins for chromosome segregation. A hybrid model of the ParB-parS was built by combining and correlating computational models with experiment-derived information about size, shape, position of the symmetry axis within the shape, internal topology, DNA-protein interface, exposed surface patches, and prior knowledge. This first view of the ParB-parS leads us to propose how ParB spread on the chromosome to form a larger assembly.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2024

Effect of adaptive cruise control on fuel consumption in real-world driving conditions

This paper presents a comprehensive analysis of the impact of adaptive cruise control on energy consumption in real-world driving conditions based on a natural experiment: a large-scale observational dataset of driving data from a diverse fleet of vehicles and drivers. The analysis is conducted at two different fidelity levels: (1) a macroscopic trip-level benefit estimate that compares trips with and without cruise control in a counterfactual way using statistical methods, and (2) a situation-based comparison achieved through the segmentation of trips into distinct driving situations such as acceleration, braking, cruising, and other maneuvers. The results of this research show that the effect of cruise control on energy consumption varies across different driving situations and levels of analysis. In a macroscopic trip-level analysis, cruise control engagement is associated with a slight increase in fuel consumption across the fleet. As revealed later by the situation-based analysis, this result can be attributed to the negative impact of cruise control on energy consumption in cruising mode, which is the most common driving situation. However, the situation-based comparison demonstrates that cruise control can provide fuel consumption benefits in situations involving acceleration and braking, particularly when a preceding vehicle is present. The study also emphasizes the importance of controlling for various factors that can influence both fuel consumption and the likelihood of cruise control engagement to properly evaluate its effects.

33 ADVANCED PROPULSION SYSTEMS↗

DOE OSTI2018

Mutant phenotypes for thousands of bacterial genes of unknown function

One-third of all protein-coding genes from bacterial genomes cannot be annotated with a function. Here, to investigate the functions of these genes, we present genome-wide mutant fitness data from 32 diverse bacteria across dozens of growth conditions. We identified mutant phenotypes for 11,779 protein-coding genes that had not been annotated with a specific function. Many genes could be associated with a specific condition because the gene affected fitness only in that condition, or with another gene in the same bacterium because they had similar mutant phenotypes. Of the poorly annotated genes, 2,316 had associations that have high confidence because they are conserved in other bacteria. By combining these conserved associations with comparative genomics, we identified putative DNA repair proteins; in addition, we propose specific functions for poorly annotated enzymes and transporters and for uncharacterized protein families. Lastly, our study demonstrates the scalability of microbial genetics and its utility for improving gene annotations.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2019

Metabotyping as a Stopover in Genome-to-Phenome Mapping

Predicting phenotypic expression from genomic and environmental information is arguably the greatest challenge in today’s biology. Being able to survey genomic content, e.g., as singlenucleotide polymorphism data, within a diverse population and predict the phenotypes of external traits, represents the holy grail across genome-informed disciplines, from personal medicine and nutrition to plant breeding. In the present study, we propose a two-step procedure in bridging the genome to phenome gap where external phenotypes are viewed as emergent properties of internal phenotypes, such as molecular profiles, in interaction with the enviorment. Using biomass accumulation and shoot-root allometry as external traits in diverse genotypes of the model grass Brachypodium distachyon , we established correlative models between genotypes and metabolite profiles (metabotypes) as internal phenotypes, and between metabotypes and external phenotypes under two contrasting watering regimes. Our results demonstrate the potential for employing metabotypes as an integrator in predicting external phenotypes from genomic information.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2015

Cross section measurements at LANSCE for defense, science and applications

The Los Alamos Neutron Science Center (LANSCE) has three neutron sources that are used for nuclear science measurements. These sources are driven by an 800 MeV proton linear accelerator and cover an energy range from sub-thermal to hundreds of MeV. Research at the facilities is performed under the auspices of a US DOE user program under which research proposals are rated for merit by a program advisory committee and are scheduled based on merit and availability of beam time. A wide variety of instruments is operated at the neutron flight paths at LANSCE including neutron detector arrays, gamma-ray detector arrays, fission fragment detectors, and charged particle detectors. These instruments provide nuclear data for multiple uses that range from increasing knowledge in fundamental science to satisfying data needs for diverse applications such as nuclear energy, global security, and industrial applications. In addition, highlights of recent research related to cross sections measurements are presented, and future research initiatives are discussed.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

DOE OSTI2024

Experimental validation of a collision-radiation dataset for molecular hydrogen in plasmas

Quantitative spectroscopy of molecular hydrogen has generated substantial demand, leading to the accumulation of diverse elementary process data encompassing radiative transitions, electron-impact transitions, predissociations, and quenching. However, their rates currently available are still sparse, and there are inconsistencies among those proposed by different authors. In this study, we demonstrate an experimental validation of such a molecular dataset by composing a collisional-radiative model (CRM) for molecular hydrogen and comparing experimentally obtained vibronic populations across multiple levels. From the population kinetics of molecular hydrogen, the importance of each elementary process in various parameter space is studied. In low-density plasmas (electron density ne≲1017 m−3) the excitation rates from the ground states and radiative decay rates, both of which have been reported previously, determine the excited state population. The inconsistency in the excitation rates affects the population distribution the most significantly in this parameter space. However, in higher density plasmas (ne≳1018 m−3), the excitation rates from excited states become important, which have never been reported in the literature, and may need to be approximated in some way. In order to validate these molecular datasets and approximated rates, we carried out experimental observations for two different hydrogen plasmas; a low-density radio frequency heated plasma (ne≈1016 m−3) and the Large Helical Device (LHD) divertor plasma (ne≳1018 m−3). The visible emission lines from EF1Σg+, HH¯1Σg+, D1Πu±, GK1Σg+, I1Πg±, J1Δg±, h3Σg+, e3Σu+, d3Πu±,g3Σg+, i3Πg±, and j3Δg± states were observed simultaneously and their population distributions were obtained from their intensities. We compared the observed population distributions with the CRM prediction, in particular the CRM with the rates compiled by Janev et al., Miles et al., and those calculated with the molecular convergent close-coupling (MCCC) method. The MCCC prediction gives the best agreement with the experiment, particularly for the emission from the low-density plasma. However, the population distribution in the LHD divertor shows a worse agreement with the CRM than those from low-density plasma, indicating the necessity of the precise excitation rates from excited states. We also found that the rates for the electron attachment is inconsistent with experimental results. This requires further investigation.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

DOE OSTI2013

LATE-TIME CIRCUMSTELLAR INTERACTION IN A SPITZER SELECTED SAMPLE OF TYPE IIn SUPERNOVAE

Type IIn supernovae (SNe IIn) are a rare (<10%) subclass of core-collapse SNe that exhibit relatively narrow emission lines from a dense, pre-existing circumstellar medium (CSM). In 2009, a warm Spitzer Space Telescope survey observed 30 SNe IIn discovered in 2003-2008 and detected 10 SNe at distances out to 175 Mpc with unreported late-time infrared emission, in some cases more than 5 yr post-discovery. For this single epoch of data, the warm-dust parameters suggest the presence of a radiative heating source consisting of optical and X-ray emission continuously generated by ongoing CSM interaction. Here we present multi-wavelength follow-up observations of this sample of 10 SNe IIn and the well-studied Type IIn SN 2010jl. A recent epoch of Spitzer observations reveals ongoing mid-infrared emission from nine of the SNe in this sample. We also detect three of the SNe in archival Wide-field Infrared Survey Explorer data, in addition to SNe 1987A, 2004dj, and 2008iy. For at least five of the SNe in the sample, optical and/or X-ray emission confirms the presence of radiative emission from ongoing CSM interaction. The two Spitzer nondetections are consistent with the forward shock overrunning and destroying the dust shell, a result that places upper limits on the dust-shell size. The optical and infrared observations confirm the radiative heating model and constrain a number of model parameters, including progenitor mass-loss characteristics. All of the SNe in this sample experienced an outburst on the order of tens to hundreds of years prior to the SN explosion followed by periods of less intense mass loss. Although all evidence points to massive progenitors, the variation in the data highlights the diversity in SN IIn progenitor evolution. While these observations do not identify a particular progenitor system, they demonstrate that future, coordinated, multi-wavelength campaigns can constrain theoretical mass-loss models.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2015

COOL CORE CLUSTERS FROM COSMOLOGICAL SIMULATIONS

We present results obtained from a set of cosmological hydrodynamic simulations of galaxy clusters, aimed at comparing predictions with observational data on the diversity between cool-core (CC) and non-cool-core (NCC) clusters. Our simulations include the effects of stellar and active galactic nucleus (AGN) feedback and are based on an improved version of the smoothed particle hydrodynamics code GADGET-3, which ameliorates gas mixing and better captures gas-dynamical instabilities by including a suitable artificial thermal diffusion. In this Letter, we focus our analysis on the entropy profiles, the primary diagnostic we used to classify the degree of cool-coreness of clusters, and the iron profiles. In keeping with observations, our simulated clusters display a variety of behaviors in entropy profiles: they range from steadily decreasing profiles at small radii, characteristic of CC systems, to nearly flat core isentropic profiles, characteristic of NCC systems. Using observational criteria to distinguish between the two classes of objects, we find that they occur in similar proportions in both simulations and observations. Furthermore, we also find that simulated CC clusters have profiles of iron abundance that are steeper than those of NCC clusters, which is also in agreement with observational results. We show that the capability of our simulations to generate a realistic CC structure in the cluster population is due to AGN feedback and artificial thermal diffusion: their combined action allows us to naturally distribute the energy extracted from super-massive black holes and to compensate for the radiative losses of low-entropy gas with short cooling time residing in the cluster core.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2025

A semidominant point mutation of Mediator tail subunit MED5b in Arabidopsis leads to altered enrichment of H3K27me3 and reduced expression of targets of MYC2

Abstract The Mediator complex coordinates regulatory input for transcription driven by RNA polymerase II in eukaryotes. reduced epidermal fluorescence4-3 (ref4-3) is a semidominant mutation that results in a single amino acid substitution in the Mediator tail subunit Med5b. Previous characterization of ref4-3 revealed altered expression of a variety of loci in Arabidopsis, including those contributing to phenylpropanoid biosynthesis. Examination of existing RNA-seq data indicated that loci enriched for the transcriptionally repressive chromatin modification H3K27me3 are overrepresented among genes that are misregulated in ref4-3. We used ChIP-seq and RNA-seq to examine the possibility that perturbation of H3K27me3 homeostasis in ref4-3 plants contributed to altered transcript levels. We observed that ref4-3 results in a modest global reduction of H3K27me3 at enriched loci and that this reduction is not dependent on gene expression; however, altered H3K27me3 was not strongly predictive of altered expression in ref4-3 plants. Instead, our analyses revealed a substantial enrichment of targets of the MYC2 transcriptional regulator among genes that exhibit decreased expression in ref4-3. Consistent with previous characterization of ref4-3, we observed that ref4-3-dependent decreased expression of MYC2 targets can be suppressed by loss of another Mediator tail subunit, MED25. This observation is consistent with previous biochemical characterization of MYC2. Our data highlight the diverse and distinct impacts that a single amino acid change in the tail subunit of Mediator can have on transcriptional circuits and raise the prospect that Mediator directly contributes to H3K27me3 homeostasis in plants.

Long, Jiaxin (ORCID:0000000335150706)↗

DOE OSTI2011

Guiding-center dynamics of vortex dipoles in Bose-Einstein condensates

A quantized vortex dipole is the simplest vortex molecule, comprising two countercirculating vortex lines in a superfluid. Although vortex dipoles are endemic in two-dimensional superfluids, the precise details of their dynamics have remained largely unexplored. We present here several striking observations of vortex dipoles in dilute-gas Bose-Einstein condensates, and develop a vortex-particle model that generates vortex line trajectories that are in good agreement with the experimental data. Interestingly, these diverse trajectories exhibit essentially identical quasiperiodic behavior, in which the vortex lines undergo stable epicyclic orbits.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

DOE OSTI2021

A Statistical Evaluation of Combining Human Productivity Metrics in the Indoor Environment

The potential of improving human productivity by providing healthy indoor environments has been a consistent interest in the building field for decades. This research field's long-standing challenge is to measure human productivity given the complex nature of office work. Previous studies have diversified productivity metrics, allowing greater flexibility in collecting human data; however, this diversity complicates the ability to combine productivity metrics from disparate studies within a meta-analysis. This study aims to categorize existing productivity metrics and statistically assess which categories show similar behavior when used to measure the impacts of indoor environmental quality. The 106 productivity metrics compiled were grouped into six productivity metric categories: neurobehavioral speed, accuracy, neurobehavioral response time, call handling time, self-reported productivity, and performance score. Then, this study set neurobehavioral speed as the baseline category given its fitness to the efficiency-based definition of productivity (i.e., output versus input) and conducted three statistical analyses with the other categories to evaluate their similarity. As results, the categories of neurobehavioral response time, self-reported productivity, and call handling time were found to have statistical similarity with neurobehavioral speed. This study contributes to creating a constructive research environment for future meta-analyses to understand which human productivity metrics can be combined with each other.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

DOE OSTI2011

A robust and efficient approach to detect 3D rectal tubes from CT colonography

Purpose: The rectal tube (RT) is a common source of false positives (FPs) in computer-aided detection (CAD) systems for CT colonography. A robust and efficient detection of RT can improve CAD performance by eliminating such ''obvious'' FPs and increase radiologists' confidence in CAD. Methods: In this paper, we present a novel and robust bottom-up approach to detect the RT. Probabilistic models, trained using kernel density estimation on simple low-level features, are employed to rank and select the most likely RT tube candidate on each axial slice. Then, a shape model, robustly estimated using random sample consensus (RANSAC), infers the global RT path from the selected local detections. Subimages around the RT path are projected into a subspace formed from training subimages of the RT. A quadratic discriminant analysis (QDA) provides a classification of a subimage as RT or non-RT based on the projection. Finally, a bottom-top clustering method is proposed to merge the classification predictions together to locate the tip position of the RT. Results: Our method is validated using a diverse database, including data from five hospitals. On a testing data with 21 patients (42 volumes), 99.5% of annotated RT paths have been successfully detected. Evaluated with CAD, 98.4% of FPs caused by the RT have been detected and removed without any loss of sensitivity. Conclusions: The proposed method demonstrates a high detection rate of the RT path, and when tested in a CAD system, reduces FPs caused by the RT without the loss of sensitivity.

62 RADIOLOGY AND NUCLEAR MEDICINE↗

DOE OSTI2016

Cyber-Physical Security Assessment (CyPSA) Toolset

CyPSA seeks to organize and gain insight into the diverse sets of data that a critical infrastructure provider must manage. Specifically CyPSA inventories, manages, and analyzes assets and relations among those assets. A variety of interfaces are provided. CyPSA inventories assets (both cyber and physical). This may include the cataloging of assets through a common interface. Data sources used to generate a catalogue of assets include PowerWorld, NPView, NMap Scans, and device configurations. Depending upon the role of the person using the tool the types of assets accessed as well as the data sources through which asset information is accessed may vary. CyPSA allows practitioners to catalogue relations among assets and these may either be manually or programmatically generated. For example, some common relations among assets include the following: Topological Network Data: Which devices and assets are connected and how? Data sources for this kind of information include NMap scans, NPView topologies (via Firewall rule analysis). Security Metrics Outputs: The output of various security metrics such as overall exposure. Configure Assets:CyPSA may eventually include the ability to configure assets including relays and switches. For example, a system administrator would be able to configure and alter the state of a relay via the CyPSA interface. Annotate Assets: CyPSA also allows practitioners to manually and programmatically annotate assets. Sources of information with which to annotate assets include provenance metadata regarding the data source from which the asset was loaded, vulnerability information from vulnerability databases, configuration information, and the output of an analysis in general.

Garcia, Luis↗

DOE OSTI2015

Web-Based Reanalysis Intercomparison Tools (WRIT) for Analysis and Comparison of Reanalyses and Other Datasets

While atmospheric reanalysis datasets are widely used in climate science, many technical issues hinder comparing them to each other and to observations. The reanalysis fields are stored in diverse file architectures, data formats, and resolutions. Their metadata, such as variable name and units, can also differ. Individual users have to download the fields, convert them to a common format, store them locally, change variable names, regrid if needed, and convert units. Even if a dataset can be read via the Open-Source Project for a Network Data Access Protocol (commonly known as OPeNDAP) or a similar protocol, most of this work is still needed. All of these tasks take time, effort, and money. Our group at the Cooperative Institute for Research in the Environmental Sciences at the University of Colorado and affiliated colleagues at the NOAA's Earth System Research Laboratory Physical Sciences Division have expertise both in making reanalysis datasets available and in creating web-based climate analysis tools that have been widely used throughout the meteorological community. To overcome some of the obstacles in reanalysis intercomparison, we have created a set of web-based Reanalysis Intercomparison Tools (WRIT) at www.esrl.noaa.gov/psd/data/writ/. WRIT allows users to easily plot and compare reanalysis datasets, and to test hypotheses. For standard pressure-level and surface variables there are tools to plot trajectories, monthly mean maps and vertical cross sections, and monthly mean time series. Some observational datasets are also included. Users can refine date, statistics, and plotting options. WRIT also facilitates the mission of the Reanalyses.org website as a convenient toolkit for studying the reanalysis datasets.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2019

IMHO Fine-Tuning Improves Claim Detection

Claims are the central component of an argument. Detecting claims across different domains or data sets can often be challenging due to their varying conceptualization. We propose to alleviate this problem by fine tuning a language model using a Reddit corpus of 5.5 million opinionated claims. These claims are self-labeled by their authors using the internet acronyms IMO/IMHO (in my (humble) opinion). Empirical results show that using this approach improves the state of art performance across four benchmark argumentation data sets by an average of 4 absolute F1 points in claim detection. As these data sets include diverse domains such as social media and student essays this improvement demonstrates the robustness of fine-tuning on this novel corpus.

Chakrabarty, Tuhin↗

DOE OSTI2013

Statistical Data Analyses of Trace Chemical, Biochemical, and Physical Analytical Signatures

Analytical and bioanalytical chemistry measurement results are most meaningful when interpreted using rigorous statistical treatments of the data. The same data set may provide many dimensions of information depending on the questions asked through the applied statistical methods. Three principal projects illustrated the wealth of information gained through the application of statistical data analyses to diverse problems.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗