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At least 523 records · Page 29

Heavy and wet: The consequences of violating assumptions of measuring soil microbial growth efficiency using the 18O water method

Soils store more carbon than the biosphere and atmosphere combined, and the efficiency to which soil microorganisms allocate carbon to growth rather than respiration is increasingly considered a proxy for the soil capacity to store carbon. This carbon use efficiency (CUE) is measured via different methods, and more recently, the 18O-H2O method has been embraced as a significant improvement for measuring CUE of soil microbial communities. Based on extrapolating 18O incorporation into DNA to new biomass, this measurement makes various implicit assumptions about the microbial community at hand. Here we conducted a literature review to evaluate how viable these assumptions are and then developed a mathematical model to test how violating them affects estimates of the growth component of CUE in soil. We applied this model to previously collected data from two kinds of soil microbial communities. By changing one parameter at a time, we confirmed our previous observation that CUE was reduced by fungal removal. Our results also show that depending on the microbial community composition, there can be substantial discrepancies between estimated and true microbial growth. Of the numerous implicit assumptions that might be violated, not accounting for the contribution of sources of oxygen other than extracellular water to DNA leads to a consistent underestimation of CUE. We present a framework that allows researchers to evaluate how their experimental conditions may influence their 18O-H2O-based CUE measurements and suggest the parameters that need further constraining to more accurately quantify growth and CUE.

Environmental Sciences & Ecology↗

The Beam-Beam Effect and its Consequences for the Jefferson Lab EIC

In this work we address the effect of beam jitter on emittance growth as caused by the beam-beam effect on the Jefferson Lab Electron Ion Collider (JLEIC). This proposed collider would collide up to 100 GeV proton beams with up to 10 GeV electron beams. Due to the asymmetric rigidities of the beams and their non-linear lensing action on each other during a collision, collective effects can limit beam storage times. Using simulations we determined that one of JLEIC’s synchronization concepts would require a new set of software tools to accurately understand phase space evolution.

Nissen, Edward↗

A global perspective on wetland salinization: ecological consequences of a growing threat to freshwater wetlands

Salinization, a widespread threat to the structure and ecological functioning of inland and coastal wetlands, is currently occurring at an unprecedented rate and geographic scale. The causes of salinization are diverse and include alterations to freshwater flows, land-clearance, irrigation, disposal of wastewater effluent, sea level rise, storm surges, and applications of de-icing salts. Climate change and anthropogenic modifications to the hydrologic cycle are expected to further increase the extent and severity of wetland salinization. Salinization alters the fundamental physicochemical nature of the soil-water environment, increasing ionic concentrations and altering chemical equilibria and mineral solubility. Increased concentrations of solutes, especially sulfate, alter the biogeochemical cycling of major elements including carbon, nitrogen, phosphorus, sulfur, iron, and silica. The effects of salinization on wetland biogeochemistry typically include decreased inorganic nitrogen removal (with implications for water quality and climate regulation), decreased carbon storage (with implications for climate regulation and wetland accretion), and increased generation of toxic sulfides (with implications for nutrient cycling and the health/functioning of wetland biota). Indeed, increased salt and sulfide concentrations induce physiological stress in wetland biota and ultimately can result in large shifts in wetland communities and their associated ecosystem functions. The productivity and composition of freshwater species assemblages will be highly altered, and there is a high potential for the disruption of existing interspecific interactions. Although there is a wealth of information on how salinization impacts individual ecosystem components, relatively few studies have addressed the complex and often non-linear feedbacks that determine ecosystem-scale responses or considered how wetland salinization will affect landscape-level processes. Although the salinization of wetlands may be unavoidable in many cases, these systems may also prove to be a fertile testing ground for broader ecological theories including (but not limited to): investigations into alternative stable states and tipping points, trophic cascades, disturbance-recovery processes, and the role of historical events and landscape context in driving community response to disturbance.

54 ENVIRONMENTAL SCIENCES↗

Biogeochemical consequences of regional land use change to a biofuel crop in the southeastern United States

Here, the United States has mandated the production of 80 billion liters of second–generation biofuel by 2022, and several approaches to meet this target focus on using ligno–cellulosic ethanol from perennial grasses and non–food crops. The large–scale deployment of biofuel agronomy should consider high–yielding crops that meet ethanol production goals, choose appropriate landscapes for biofuel crops from a climate and food production standpoint, and a full consideration of the environmental impact of large–scale land use change. The southeastern United States has a long growing season conducive for producing high–yielding crops, and is relatively less important to US food production than the rain–fed Midwestern states that have been extensively studied for biofuel crops. We use the DayCent biogeochemical model to run simulation experiments to test the hypotheses that converting a large swath of traditional agriculture in the southeastern United States that is already utilized for bioenergy production (assuming 35% of current corn–soy, and 10% of grazed pasture hectares; ~950,000 ha) to energy cane will result in greater biomass production, increased soil C storage, decreased soil N losses and lower greenhouse gas emissions than a landscape of corn–soy rotations and interspersed grazed pasture. Our simulations suggest that energy cane above–ground productivity on former pasture and corn–soy fields would be between 52–59 million Mg dry mass per year, resulting in 21.1–23.7 billion liters of ligno–cellulosic ethanol, or ~28% of the 2022 US government mandate. DayCent did not predict significant changes in soil C flux from land conversion to energy cane, but simulations predicted lower rates of N loss compared to current agriculture. GHG emissions from energy cane landscapes were substantially higher on former pasture, but an order of magnitude lower when compared to corn–soy hectares. While further study is needed to ascertain the full economic and industrial feasibility of converting nearly 1,000,000 ha of land to energy cane production, our results suggest that such an undertaking could meet a sizeable fraction of the US ethanol mandate, reduce N pollution and GHG emissions, and avoid compromising land devoted to food production in the southeastern United States.

southeastern United States↗

Evaluation of DOE Technical Standard 1027 and Supplemental Guidance NA-1 SD G 1027. Examining Radionuclide NESHAP Impacts and Off-Site Dose Consequences

This document is intended to briefly describe changes to Department of Energy Technical Standard 1027 and the associated effects of these changes on radionuclide air emissions from operations at Los Alamos National Laboratory (LANL). Each general category of LANL radionuclide air emissions is evaluated, and the manner in which changes to Standard 1027 would affect the emissions and subsequent doses to members of the public is discussed. While the material discussed in this document applies specifically to LANL operations, the information may be generally applicable to other DOE sites in some cases.

54 ENVIRONMENTAL SCIENCES↗

Consequences of altering rubisco regulation

Research examined the thermal stability and propensity for aggregation of wild type and the C- and N-terminally modified forms of activase to determine if loss of activity under heat stress is dependent on protein aggregation. The results showed that 1) loss of activity at high temperature is independent of aggregation; 2) activase with both C- and N-terminal S-Tags are more susceptible to aggregation than wild type activase, 3) aggregation is highly dependent on the concentration of Mg2+ and 4) the ATP analog, ATPgammaS, protects against both thermal inactivation and aggregation.

99 GENERAL AND MISCELLANEOUS↗

Plutonium Oxide Containment and the Potential for Water-Borne Transport as a Consequence of ARIES Oxide Processing Operations

The question of oxide containment during processing and storage has become a primary concern when considering the continued operability of the Plutonium Facility (PF-4) at Los Alamos National Laboratory (LANL). An Evaluation of the Safety of the Situation (ESS), “Potential for Criticality in a Glovebox Due to a Fire” (TA55-ESS-14-002-R2, since revised to R3) first issued in May, 2014 summarizes these concerns: “The safety issue of fire water potentially entering a glovebox is: the potential for the water to accumulate in the bottom of a glovebox and result in an inadvertent criticality due to the presence of fissionable materials in the glovebox locations and the increased reflection and moderation of neutrons from the fire water accumulation.” As a result, the existing documented safety analysis (DSA) was judged inadequate and, while it explicitly considered the potential for criticality resulting from water intrusion into gloveboxes, criticality safety evaluation documents (CSEDs) for the affected locations did not evaluate the potential for fire water intrusion into a glovebox.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

Consequence Analysis for Used Fuel Extended Storage

Early identification and evaluation of security issues related to the extended storage of used nuclear fuel is critical. A breach in a dry fuel storage container has the possibility of external gas from the atmosphere interacting with the used fuel rods at high temperatures, resulting in rapid oxidation and possibly the ignition of a zirconium fire. In support of this idea, the current work aims to develop a computational model of heat transfer and fluid flow in and through a breached dry fuel storage cask to determine if the resulting flow conditions are likely to result in a fire.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

Developing a novel hierarchical approach for multiscale structural reliability predictions for ultra-high consequence applications

Microstructural variabilities are among the predominant sources of uncertainty in structural performance and reliability. We seek to develop efficient algorithms for multiscale calcu- lations for polycrystalline alloys such as aluminum alloy 6061-T6 in environments where ductile fracture is the dominant failure mode. Our approach employs concurrent multiscale methods, but does not focus on their development. They are a necessary but not sufficient ingredient to multiscale reliability predictions. We have focused on how to efficiently use concurrent models for forward propagation because practical applications cannot include fine-scale details throughout the problem domain due to exorbitant computational demand. Our approach begins with a low-fidelity prediction at the engineering scale that is sub- sequently refined with multiscale simulation. The results presented in this report focus on plasticity and damage at the meso-scale, efforts to expedite Monte Carlo simulation with mi- crostructural considerations, modeling aspects regarding geometric representation of grains and second-phase particles, and contrasting algorithms for scale coupling.

36 MATERIALS SCIENCE↗

Establishing the consequences of intertwined order parameters in spatially modulated superconductors. Final Report

This the Final Report for the grant DE-SC0012368. The purpose of this project was to establish the generality and full implications of phasesensitive coupling between charge and superconducting order parameters in materials exhibiting charge inhomogeneity. Specifically, our targeted goal was to first confirm experimentally a number of unique phenomena predicted by Berg et al for the cuprate material La 2-x Ba x CuO 4 (LBCO), commonly believed to contain such coupling and then extend the work to include several other superconducting families. More generally, our expanded research program sought to identify material families with co-existing charge and superconducting orders, and to understand the nature of the coupling between the order parameters. In the long term, we hope these are the first steps in identifying symmetry-based unifying principles, which might provide the foundation for a universal phenomenological theory, appropriate to describe to multiple families containing unconventional superconductivity.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Radiological Consequences of Beam Loss on Beamline Front End Collimator during Top-off Injection into the Storage Ring

The primary radiological safety concern for the top-off injection, with the beam line front end safety shutters open, is the scenario where electrons could be conveyed down to the beam line through the front end due to the erroneous combination of lattice magnetic field settings and beam energy. It is of paramount importance to ensure that such events are of remote possibility. Particle tracking simulations by the NSLS-II Accelerator Physicists have shown that by a set of interlocking requirements of the lattice magnetic fields and by the implementation of physical apertures, the errant electron beam can be confined to the front end components within the storage ring.

36 MATERIALS SCIENCE↗

Radiological Consequences of Beam Loss at Front End by FLUKA during Top-off Injection into the Storage Ring for PROJECT Beamlines

NSLS-II plans to run the top-off mode operation in the near future. Particle tracking simulations proved that an errant injected electron beam can be confined to the beam-line frontend inside the storage ring tunnel by use of appropriate apertures and interlocks. Photon shutter collimator 2 (C2) was selected as the safe point (i.e. electron beam can’t travel beyond the safe point). FLUKA simulations have been carried out with the current beamline front ends and ratchet wall configurations to independently verify the previous calculations performed [1].

36 MATERIALS SCIENCE↗

Consequence Analysis for Used Fuel Extended Storage: Density-based SFR Modeling Refinement [Slides]

ALE3D has been used to simulate a copper jet impacting a spent fuel pellet. The ultimate goal of these simulations is to determine the respirable fraction of particulates produced by the interaction. This is related to the change in energy density in the fuel pellet. A series of simplified simulations has been performed in order to better understand the differences in the modeling approaches between ALE3D and CTH. The effect of density variation on the energy response of the fuel has been studied.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

Sensitivity and Uncertainty Workflow of Full System SIERRA Models Supporting High Consequence Applications

Credibility of end-to-end CompSim (Computational Simulation) models and their agile execution requires an expressive framework to describe, communicate and execute complex computational tool chains representing the model. All stakeholders from system engineering and customers through model developers and V&V partners need views and functionalities of the workflow representing the model in a manner that is natural to their discipline. In the milestone and in this report we define workflow as a network of computation simulation activities executed autonomously on a distributed set of computational platforms. The FY19 ASC L2 Milestone (6802) for the Integrated Workflow (IWF) project was designed to integrate and improve existing capabilities or develop new functionalities to provide a wide range of stakeholders a coherent and intuitive platform capable of defining and executing CompSim modeling from analysis workflow definition to complex ensemble calculations. The main goal of the milestone was to advance the integrated workflow capabilities to support the weapon system analysts with a production deployment in FY20. Ensemble calculations supporting program decisions include sensitivity analysis, optimization and uncertainty quantification. The goal of the L2 milestone aligned with the ultimate goal of the IWF project is to foster cultural and technical shift toward and integrated CompSim capability based on automated workflows. Specific deliverables were defined in five broad categories: 1) Infrastructure, including development of distributed-computing workflow capability, 2) integration of Dakota (Sandia's sensitivity, optimization and UQ engine) with SAW (Sandia Analysis Workbench), 3) ARG (Automatic Report Generator introspecting analysis artifacts and generating human-readable extensible and archivable reports), 4) Libraries and Repositories aiding capability reuse, and 5) Exemplars to support training, capturing best practices and stress testing of the platform. A set of exemplars was defined to represent typical weapon system qualification CompSim projects. Analyzing the required capabilities and using the findings to plan implementation of required capabilities ensured optimal allocation of development resources focused on production deployment after the L2 is completed. It was recognized early that the end-to-end modeling applications pose a considerable number of diverse risks, and a formal risk tracking process was implemented. The project leveraged products, capabilities and development tasks of IWF partners. SAW, Dakota, Cubit, Sierra, Slycat, and NGA (NexGen Analytics, a small business) contributed to the integrated platform developed during this milestone effort. New products delivered include: a) NGW (Next Generation Workflow) for robust workflow definition and execution, b) Dakota wizards, editor and results visualization, and c) the automatic report generator ARG. User engagement was initiated early in the development process eliciting concrete requirements and actionable feedback to assure that the integrated CompSim capability will have high user acceptance and impact. The current integrated capabilities have been demonstrated and are continually being tested by a set of exemplars ranging from training scenarios to computationally demanding uncertainty analyses. The integrated workflow platform has been deployed on both SRN (Sandia Restricted Network) and SCN (Sandia Classified Network). Computational platforms where the system has been demonstrated span from Windows (Creo the CAD platform chosen by Sandia) to Trinity HPC (Sierra and CTH solvers). Follow up work will focus on deployment at SNL and other sites in the nuclear enterprise (LLNL, KCNSC), training and consulting support to democratize the analysis agility, process health and knowledge management benefits the NGW platform provides.

97 MATHEMATICS AND COMPUTING↗