Engineering Papers⌕ Search

SEARCH · Engineering Papers

Results for “Web tools”

Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 523 records · Page 29
All sourcesNASA NTRSDOE OSTI
DOE OSTI2021

CERES : a cryo-EM re-refinement system for continuous improvement of deposited models

The field of electron cryomicroscopy (cryo-EM) has advanced quickly in recent years as the result of numerous technological and methodological developments. This has led to an increase in the number of atomic structures determined using this method. Recently, several tools for the analysis of cryo-EM data and models have been developed within the Phenix software package, such as phenix.real_space_refine for the refinement of atomic models against real-space maps. Also, new validation metrics have been developed for low-resolution cryo-EM models. To understand the quality of deposited cryo-EM structures and how they might be improved, models deposited in the Protein Data Bank that have map resolutions of better than 5 Å were automatically re-refined using current versions of Phenix tools. The results are available on a publicly accessible web page (https://cci.lbl.gov/ceres). The implementation of a Cryo-EM Re-refinement System ( CERES ) for the improvement of models deposited in the wwPDB, and the results of the re-refinements, are described. Based on these results, contents are proposed for a `cryo-EM Table 1', which summarizes experimental details and validation metrics in a similar way to `Table 1' in crystallography. The consistent use of robust metrics for the evaluation of cryo-EM models and data should accompany every structure deposition and be reported in scientific publications.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2024

Biological Parts Search Portal (BioParts) v1.0.0

BioParts is a web based search portal for biological parts available in the public domain. It combines the ease and convenience of modern web search engines with the capabilities of bioinformatics search tools such as BLAST. This portal, available at bioparts.org, allows anyone to search for publicly accessible biological part information (e.g., NCBI, iGEM, SynBioHub, Addgene), including parts publicly accessible through ICE Registries. Additionally, the portal offers a REST API that enables third-party applications and tools to access the portal's functionality programmatically. While there are several standalone biological part repositories, there doesn't exist an application that indexes these publicly available parts and enables features such as keyword and BLAST searches along with automatic sequence annotation.

Plahar, Hector↗
DOE OSTI2023

RCSB Protein Data Bank: visualizing groups of experimentally determined PDB structures alongside computed structure models of proteins

Recent advances in Artificial Intelligence and Machine Learning (e.g., AlphaFold, RosettaFold, and ESMFold) enable prediction of three-dimensional (3D) protein structures from amino acid sequences alone at accuracies comparable to lower-resolution experimental methods. These tools have been employed to predict structures across entire proteomes and the results of large-scale metagenomic sequence studies, yielding an exponential increase in available biomolecular 3D structural information. Given the enormous volume of this newly computed biostructure data, there is an urgent need for robust tools to manage, search, cluster, and visualize large collections of structures. Equally important is the capability to efficiently summarize and visualize metadata, biological/biochemical annotations, and structural features, particularly when working with vast numbers of protein structures of both experimental origin from the Protein Data Bank (PDB) and computationally-predicted models. Moreover, researchers require advanced visualization techniques that support interactive exploration of multiple sequences and structural alignments. This paper introduces a suite of tools provided on the RCSB PDB research-focused web portal RCSB. org, tailor-made for efficient management, search, organization, and visualization of this burgeoning corpus of 3D macromolecular structure data.

3D visualization↗
NASA NTRS2001

Flight, Wind-Tunnel, and Computational Fluid Dynamics Comparison for Cranked Arrow Wing (F-16XL-1) at Subsonic and Transonic Speeds

Geometrical, flight, computational fluid dynamics (CFD), and wind-tunnel studies for the F-16XL-1 airplane are summarized over a wide range of test conditions. Details are as follows: (1) For geometry, the upper surface of the airplane and the numerical surface description compare reasonably well. (2) For flight, CFD, and wind-tunnel surface pressures, the comparisons are generally good at low angles of attack at both subsonic and transonic speeds, however, local differences are present. In addition, the shock location at transonic speeds from wind-tunnel pressure contours is near the aileron hinge line and generally is in correlative agreement with flight results. (3) For boundary layers, flight profiles were predicted reasonably well for attached flow and underneath the primary vortex but not for the secondary vortex. Flight data indicate the presence of an interaction of the secondary vortex system and the boundary layer and the boundary-layer measurements show the secondary vortex located more outboard than predicted. (4) Predicted and measured skin friction distributions showed qualitative agreement for a two vortex system. (5) Web-based data-extraction and computational-graphical tools have proven useful in expediting the preceding comparisons. (6) Data fusion has produced insightful results for a variety of visualization-based data sets.

John E Lamar↗
NASA NTRS2004

The Burst and Transient Source Experiment (BATSE) Earth Occultation Catalog

The hard X-ray sky was continuously monitored with the BATSE experiment on the Compton Gamma Ray observatory using the Earth Occultation method. Known sources were monitored twice every orbit and transients could be detected at about the approx. 50 mCrab level on a daily basis. I will summarize the results from our catalog of 179 monitored sources, highlighting observations of black holes and energy spectra for the 83 firmly detected sources and FITS files for all 179 sources. This web database can serve as a guide and comparison tool for future observations with EXIST.

Wilson-Hodge, Colleen A.↗
NASA NTRS2009

Lunar Mapping and Modeling Project

The Lunar Mapping and Modeling Project (LMMP) has been created to manage the development of a suite of lunar mapping and modeling products that support the Constellation Program (CxP) and other lunar exploration activities, including the planning, design, development, test and operations associated with lunar sortie missions, crewed and robotic operations on the surface, and the establishment of a lunar outpost. The information provided through LMMP will assist CxP in: planning tasks in the areas of landing site evaluation and selection, design and placement of landers and other stationary assets, design of rovers and other mobile assets, developing terrain-relative navigation (TRN) capabilities, and assessment and planning of science traverses. The project draws on expertise from several NASA and non-NASA organizations (MSFC, ARC, GSFC, JPL, CRREL US Army Cold Regions Research and Engineering Laboratory, and the USGS). LMMP will utilize data predominately from the Lunar Reconnaissance Orbiter, but also historical and international lunar mission data (e.g. Apollo, Lunar Orbiter, Kaguya, Chandrayaan-1), as available and appropriate, to meet Constellation s data needs. LMMP will provide access to this data through a single intuitive and easy to use NASA portal that transparently accesses appropriately sanctioned portions of the widely dispersed and distributed collections of lunar data, products and tools. Two visualization systems are being developed, a web-based system called Lunar Mapper, and a desktop client, ILIADS, which will be downloadable from the LMMP portal. LMMP will provide such products as local and regional imagery and DEMs, hazard assessment maps, lighting and gravity models, and resource maps. We are working closely with the LRO team to prevent duplication of efforts and to ensure the highest quality data products. While Constellation is our primary customer, LMMP is striving to be as useful as possible to the lunar science community, the lunar commercial community, the lunar education and public outreach (E/PO) community, and anyone else interested in accessing or utilizing lunar data. A beta version of the portal and visualization systems is expected to be released in late 2009, with a version 1 release planned for early 2011.

Noble, Sarah K.↗
NASA NTRS2012

From EXOSAT to the High Energy Astrophysics Science Archive (HEASARC): X-ray Astronomy Comes of Age

In May 1983 the European Space Agency launched EXOSAT, its first X-ray astronomy observatory. Even though it lasted only 3 short years, this mission brought not only new capabilities that resulted in unexpected discoveries, but also a pioneering approach to operations and archiving that changed X-ray astronomy from observations led by small instrument teams, to an observatory approach open to the entire community through a guest observer program. The community use of the observatory was supported by a small dedicated team of scientists, the precursor to the data center activities created to support e.g. Chandra and XMM-Newton. The new science capabilities of EX OS AT included a 90 hr highly eccentric high earth orbit that allow unprecedented continuous coverage of sources as well as direct communication with the satellite that allowed real time decisions to respond to unexpected events through targets of opportunity. The advantages of this orbit demonstrated by EXOSAT resulted in Chandra and XMM-Newton selecting similar orbits. The three instruments on board the EXOSAT observatory were complementary, designed to give complete coverage over a wide energy band pass of 0.05-50 keY. An onboard processor could be programmed to give multiple data modes that could be optimized in response to science discoveries: These new capabilities resulted in many new discoveries including the first comprehensive study of AGN variability, new orbital periods in X-ray binaries and cataclysmic variables, new black holes, quasi-periodic oscillations from neutron stars and black holes and broad band X-ray spectroscopy. The EXOSAT team generated a well-organized database accessible worldwide over the nascent internet, allowing remote selection of data products, making samples and undertaking surveys from the data. The HEASARC was established by NASA at Goddard Space Flight Center in 1990 as the repository of NASA X-ray and Gamma-ray data. The proven EXOSAT database system became the core of the HEASARC infrastructure. The HEASARC pioneered many concepts now taken for granted including standardized formats using FITS files, restoring data from earlier missions, multi-mission analysis tools and a searchable archive over the world wide web.

White, Nicholas E.↗
NASA NTRS2019

Visualization and Analysis of Solar System Small Bodies with NASA's Solar System Treks Project

In its investigations of Vesta and Ceres, NASA’s Dawn mission has returned spectacular data detailing the surfaces of these two prominent small bodies in our Solar System’s asteroid belt. In order to greatly facilitate dissemination, visualization, and analysis of this data, and public understanding of the mission, the Dawn mission has partnered with NASA’s Solar System Treks Project (SSTP). SSTP has recently released an update to the Vesta Trek online portal (https://trek.nasa.gov/vesta/) and has released a new Ceres Trek portal (https://trek.nasa.gov/ceres/). This presentation will showcase the use of the Ceres Trek and Vesta Trek portals and demonstrate how they can be used to visualize and analyze particularly interesting landforms such as the pitted terrain on Vesta and relic cryovolcanoes on Ceres. We will also demonstrate the new VR capability that has been added to the portals, allowing users to generate their own virtual reality flyovers for any user-defined paths along the bodies’ surfaces. In addition to highlighting the portals for Ceres and Vesta, the presentation will preview additional portals being planned/developed for other small bodies. NASA and JAXA have requested the development of a portal for the asteroid Ryugu to facilitate dissemination, visualization, and analysis of data from Japan’s Hayabusa2 mission, and a portal for Mars’ moon Phobos in support of mission planning for Japan’s MMX mission. We are also planning a portal for the asteroid Bennu with data from the OSIRIS-Rex mission. All of these products are efforts in the NASA Solar System Treks Project (SSTP), available at https://trek.nasa.gov. NASA's Solar System Trek online portals provide web-based suites of interactive data visualization and analysis tools to enable mission planners, planetary scientists, students, and the general public to access mapped data products from past and current missions for a growing number of planetary bodies including the Moon, Mars, Vesta, etc. These portals are being used for site selection and analysis by NASA and a number of its international partners, supporting upcoming missions. In addition to demonstrating the capabilities of selected portals in this presentation, we will solicit input from the community for ideas for future enhancements to the portals.

Day, Brian↗
NASA NTRSDate not supplied

NASA’s Astrophysics Cross-Observatory Science Support (ACROSS) Initiative

The Astro2020 Decadal Survey recommended an investment in Time Domain and Multi-Messenger Astrophysics (TDAMM) as the top-priority sustaining activity in space for the coming decade. One aspect of NASA’s response to this recommendation is a pilot project, the Astrophysics Cross-Observatory Science Support (ACROSS) Initiative, designed to provide support to both missions and observers as they pursue TDAMM science. Here, we present the results of our study and initial plans for ACROSS activities, including services to facilitate and improve cross-mission follow-up planning and execution; a multi-messenger web portal with links to existing mission resources, community tools, and information targeted for TDAMM General Observers; development of “Smart Target of Opportunity submission page” proof-of-concepts; and ongoing development of a potential TDAMM general observing competitive grant solicitation. We invite further discussion with both scientists and mission representatives to better understand their needs and concerns as ACROSS begins its pilot phase.

Brian Humensky↗
NASA NTRS2024

NASA’s Astrophysics Cross-Observatory Science Support (ACROSS) Initiative: Enabling Time-Domain and Multimessenger

The Astro2020 Decadal Survey recommended an investment in Time-Domain and 4 Multimessenger Astrophysics (TDAMM) as the top-priority sustaining activity in space for the 5 coming decade. One aspect of NASA’s response to this recommendation is a pilot project, 6 the Astrophysics Cross-Observatory Science Support (ACROSS) initiative, designed to provide 7 support to both missions and observers as they pursue TDAMM science. Here, we present our 8 observations of needs in the community and initial plans for ACROSS activities, including services 9 to facilitate and improve cross-mission follow-up planning and execution; a multimessenger web portal with links to existing mission resources, community tools, and information targeted for 11 TDAMM general observers; development of “Smart target-of-opportunity submission page” proof-12 of-concepts; and ongoing development of a potential TDAMM general observing competitive 13 grant solicitation. As the ACROSS pilot phase begins, we invite discussion of our plans with both 14 missions and observers to better understand their needs and concerns.

T B Humensky↗
NASA NTRS2001

Creation and utilization of a World Wide Web based space radiation effects code: SIREST

In order for humans and electronics to fully and safely operate in the space environment, codes like HZETRN (High Charge and Energy Transport) must be included in any designer's toolbox for design evaluation with respect to radiation damage. Currently, spacecraft designers do not have easy access to accurate radiation codes like HZETRN to evaluate their design for radiation effects on humans and electronics. Today, the World Wide Web is sophisticated enough to support the entire HZETRN code and all of the associated pre and post processing tools. This package is called SIREST (Space Ionizing Radiation Effects and Shielding Tools). There are many advantages to SIREST. The most important advantage is the instant update capability of the web. Another major advantage is the modularity that the web imposes on the code. Right now, the major disadvantage of SIREST will be its modularity inside the designer's system. This mostly comes from the fact that a consistent interface between the designer and the computer system to evaluate the design is incomplete. This, however, is to be solved in the Intelligent Synthesis Environment (ISE) program currently being funded by NASA.

NASA Discipline Radiation Health↗
NASA NTRS2004

CmapTools: A Software Environment for Knowledge Modeling and Sharing

In an ongoing collaborative effort between a group of NASA Ames scientists and researchers at the Institute for Human and Machine Cognition (IHMC) of the University of West Florida, a new version of CmapTools has been developed that enable scientists to construct knowledge models of their domain of expertise, share them with other scientists, make them available to anybody on the Internet with access to a Web browser, and peer-review other scientists models. These software tools have been successfully used at NASA to build a large-scale multimedia on Mars and in knowledge model on Habitability Assessment. The new version of the software places emphasis on greater usability for experts constructing their own knowledge models, and support for the creation of large knowledge models with large number of supporting resources in the forms of images, videos, web pages, and other media. Additionally, the software currently allows scientists to cooperate with each other in the construction, sharing and criticizing of knowledge models. Scientists collaborating from remote distances, for example researchers at the Astrobiology Institute, can concurrently manipulate the knowledge models they are viewing without having to do this at a special videoconferencing facility.

Canas, Alberto J.↗
DOE OSTI2021

Building Toward the Future in Chemical and Materials Simulation with Accessible and Intelligently Designed Web Applications

Over the last few decades, significant progress has been made in the development and use of electronic structure and other molecular simulation methods. As these methods become more mature and are able to simulate larger and more complex chemical simulations, the need for improvement in scientific visualization, molecular builders, simplified input to simulation methods, and the development of new approaches and languages to describe simulations, along with workflows to carry them out, becomes more apparent. In this chapter, we describe our recent efforts in developing a prototype open-source computational tool called Arrows that combines NWChem, SQL and NoSQL databases, email, web APIs, and web applications in a way that make molecular and materials modeling accessible to all scientists and engineers. At the same time, because of its simplified input, it provides a framework for expert users to carry out large numbers of calculations and run complex workflows.

2↗
DOE OSTI2020

hectorui: A web-based interactive scenario builder and visualization application for the Hector climate model

In a world of increasingly online, distributed, and diverse interdisciplinary research, there is a need to provide accessible and user-friendly interactive visualization tools that elucidate complex models and their output products. Hector UI is an R Shiny web interface built to extend the simple global climate model Hector (Hartin et al. 2015), originally designed in C++ with an accompanying R interface. Traditionally, Hector has only had a command line interface available which requires fluency in C++ or R and a full understanding of Hector’s parameter space to run the model and create output. Hector UI provides a fast, efficient solution that makes the model more accessible to a broader user base. This implementation allows users that may not be fluent in R or C++ to interactively explore model scenarios and outputs in an easy to use, guided point and click interface.

97 MATHEMATICS AND COMPUTING↗
NASA NTRS2005

Statistical Considerations of Data Processing in Giovanni Online Tool

The GES DISC Interactive Online Visualization and Analysis Infrastructure (Giovanni) is a web-based interface for the rapid visualization and analysis of gridded data from a number of remote sensing instruments. The GES DISC currently employs several Giovanni instances to analyze various products, such as Ocean-Giovanni for ocean products from SeaWiFS and MODIS-Aqua; TOMS & OM1 Giovanni for atmospheric chemical trace gases from TOMS and OMI, and MOVAS for aerosols from MODIS, etc. (http://giovanni.gsfc.nasa.gov) Foremost among the Giovanni statistical functions is data averaging. Two aspects of this function are addressed here. The first deals with the accuracy of averaging gridded mapped products vs. averaging from the ungridded Level 2 data. Some mapped products contain mean values only; others contain additional statistics, such as number of pixels (NP) for each grid, standard deviation, etc. Since NP varies spatially and temporally, averaging with or without weighting by NP will be different. In this paper, we address differences of various weighting algorithms for some datasets utilized in Giovanni. The second aspect is related to different averaging methods affecting data quality and interpretation for data with non-normal distribution. The present study demonstrates results of different spatial averaging methods using gridded SeaWiFS Level 3 mapped monthly chlorophyll a data. Spatial averages were calculated using three different methods: arithmetic mean (AVG), geometric mean (GEO), and maximum likelihood estimator (MLE). Biogeochemical data, such as chlorophyll a, are usually considered to have a log-normal distribution. The study determined that differences between methods tend to increase with increasing size of a selected coastal area, with no significant differences in most open oceans. The GEO method consistently produces values lower than AVG and MLE. The AVG method produces values larger than MLE in some cases, but smaller in other cases. Further studies indicated that significant differences between AVG and MLE methods occurred in coastal areas where data have large spatial variations and a log-bimodal distribution instead of log-normal distribution.

Suhung, Shen↗
NASA NTRS2007

Tracking-Data-Conversion Tool

Object Oriented Data Technology (OODT) is a software framework for creating a Web-based system for exchange of scientific data that are stored in diverse formats on computers at different sites under the management of scientific peers. OODT software consists of a set of cooperating, distributed peer components that provide distributed peer-topeer (P2P) services that enable one peer to search and retrieve data managed by another peer. In effect, computers running OODT software at different locations become parts of an integrated data-management system.

Flora-Adams, Dana↗
NASA NTRS2003

Software Tools to Support Research on Airport Departure Planning

A simple, portable and useful collection of software tools has been developed for the analysis of airport surface traffic. The tools are based on a flexible and robust traffic-flow model, and include calibration, validation and simulation functionality for this model. Several different interfaces have been developed to help promote usage of these tools, including a portable Matlab(TM) implementation of the basic algorithms; a web-based interface which provides online access to automated analyses of airport traffic based on a database of real-world operations data which covers over 250 U.S. airports over a 5-year period; and an interactive simulation-based tool currently in use as part of a college-level educational module. More advanced applications for airport departure traffic include taxi-time prediction and evaluation of "windowing" congestion control.

Carr, Francis↗