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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 523 records · Page 29
All sourcesNASA NTRSDOE OSTI
DOE OSTI2023

Connectivity between Static Field and Continuous Wave Field Effects on Excitation-Induced H 2 Activation

Due to the tremendous applications of the plasmon resonance excitation process, such as improvements in catalytic efficiency due to plasmonic enhancement and/or hot-electron processes, understanding the mechanism behind these processes has become a popular topic in recent years. In this work, we focus on unraveling the mechanism of excitation-induced H 2 activation using a simplified triangular Au 6 /Ag 6 cluster to investigate the effects of the electric field on electron redistribution and bond activation. We applied both static and continuous wave fields to investigate how these fields affect the systems. Geometrical changes (such as bond lengthening), molecular orbital reordering (affecting the relative energies of orbitals corresponding to hot-electron and charge-transfer excited states), and electronic charge redistribution between the cluster and the adsorbate occur upon application of a static electric field. To study H 2 activation, we apply Ehrenfest dynamics with real-time time-dependent density functional theory and examine how different excitation frequencies and polarizations affect bond activation. Moreover, electron-only dynamics are examined with real-time time-dependent density functional theory, and the time-dependent variations in the orbital populations and electronic transitions provide information about the excitation and relaxation processes of hot electrons with applied electric fields. Here, the static field results represent structures that can be accessed during the evolution of the systems when applying continuous wave fields. Through these studies, the effects of static and continuous wave field effects on plasmon-induced H 2 activation can be understood.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2023

Molecular basis of differential HLA class I-restricted T cell recognition of a highly networked HIV peptide

Cytotoxic-T-lymphocyte (CTL) mediated control of HIV-1 is enhanced by targeting highly networked epitopes in complex with human-leukocyte-antigen-class-I (HLA-I). However, the extent to which the presenting HLA allele contributes to this process is unknown. Here we examine the CTL response to QW9, a highly networked epitope presented by the disease-protective HLA-B57 and disease-neutral HLA-B53. Despite robust targeting of QW9 in persons expressing either allele, T cell receptor (TCR) cross-recognition of the naturally occurring variant QW9_S3T is consistently reduced when presented by HLA-B53 but not by HLA-B57. Crystal structures show substantial conformational changes from QW9-HLA to QW9_S3T-HLA by both alleles. The TCR-QW9-B53 ternary complex structure manifests how the QW9-B53 can elicit effective CTLs and suggests sterically hindered cross-recognition by QW9_S3T-B53. We observe populations of cross-reactive TCRs for B57, but not B53 and also find greater peptide-HLA stability for B57 in comparison to B53. These data demonstrate differential impacts of HLAs on TCR cross-recognition and antigen presentation of a naturally arising variant, with important implications for vaccine design.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2021

25 Siβ + -decay spectroscopy

Background: β-decay spectroscopy provides valuable information on exotic nuclei and a stringent test for nuclear theories beyond the stability line. Purpose: To search for new β-delayed protons and γ rays of 25 Si to investigate the properties of 25 Al excited states. Method: 25 Si β decays were measured by using the Gaseous Detector with Germanium Tagging system at the National Superconducting Cyclotron Laboratory. The protons and γ rays emitted in the decay were detected simultaneously. Here, a Monte Carlo method was used to model the Doppler broadening of 24 Mg γ-ray lines caused by nuclear recoil from proton emission. Shell-model calculations using two newly developed universal sd-shell Hamiltonians were performed. Results: The most precise 25Si half-life to date has been determined. A new proton branch at 724(4) keV and new proton-γ-ray coincidences have been identified. Three 24 Mg γ-ray lines and eight 25 Al γ-ray lines are observed for the first time in 25 Si decay. The first measurement of the 25 Si β-delayed γ-ray intensities through the 25 Al unbound states is reported. All the bound states of 25 Al are observed to be populated in the β decay of 25 Si. Several inconsistencies between the previous measurements have been resolved, and new information on the 25 Al level scheme is provided. An enhanced decay scheme has been constructed and compared to the mirror decay of 25 Na and the shell-model calculations. Conclusions: The measured excitation energies, γ-ray and proton branchings, log $ft$ values, and Gamow-Teller transition strengths for the states of 25 Al populated in the β decay of 25 Si are in good agreement with the shell model calculations, offering gratifyingly consistent insights into the fine nuclear structure of 25 Al.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2026

Plastome evolution in annual Brachypodium species reveals widespread heteroplasmy and chloroplast capture, lineage-specific codon usage bias, and low positive selection

Comparative genomics and plastome phylogenomics have advanced significantly in recent years, highlighting the diversity, possible admixture, and non-neutral evolution of the predominantly considered non-recombinant chloroplast genomes in angiosperms. The grass genus Brachypodium serves as a powerful model for studying evolutionary processes in monocots. We analyzed 287 plastomes across the native circum-Mediterranean range of the three annual Brachypodium species ( B. distachyon, B. stacei, B. hybridum ), focusing on their structural variation, selection patterns and phylogenomic relationships. Our analyses confirmed the differentiation of the S and D plastomes, inherited respectively from the diploid progenitor species B. stacei and B. distachyon . We identified novel structural rearrangements and indels, and unique repeat motifs, along with widespread heteroplasmy, particularly in ancestral B. hybridum -D plastotypes. SNP diversity varied among plastotypes, reflecting population dynamics and evolutionary histories, with B. hybridum -D plastotypes showing the highest normalized diversity and B. hybridum -S the lowest. Positive selection was detected in 29 plastid genes by Tajima’s neutrality test, and in nine genes by site and branch-site evolutionary models, including matK, ndhF, rbcL, and rpoC2. Phylogenomic analyses revealed well-supported clades corresponding to the S and D plastome lineages, with frequent chloroplast capture events and long-distance dispersals shaping their evolutionary trajectories.

allopolyploidy↗
DOE OSTI2022

MVP-CTL Fellowship for Suicide Intervention (CRADA Final Report)

Research conducted with Crisis Text Line (CTL) served as an important stepping stone in the group’s ongoing work of developing natural language processing (NLP) methodologies to discover indicators of suicide factors in the U.S. veteran population. With rising cases of suicide, detecting risk factors among veterans is of growing concern. Socio-economic factors are often under-reported along structured medical variables, and extracting information through NLP methods may improve the sensitivity of suicide prediction models. The research explored through the CTL collaboration provided insights on suicide crisis detection and de-escalation, experience in applying scalable data analysis on real world datasets, contributions to study designs for detecting rare-event and produced transferable methods applicable to the domain of veteran suicide mitigation. Tools developed during this research directly benefits ongoing work on the Million Veteran Project (MVP) collaboration with the Department of Veteran Affairs (VA).

99 GENERAL AND MISCELLANEOUS↗
DOE OSTI2022

The MURAVES Experiment: A Study of the Vesuvius Great Cone with Muon Radiography

The MURAVES experiment aims at the muographic imaging of the internal structure of the summit of Mt. Vesuvius, exploiting muons produced by cosmic rays. Though presently quiescent, the volcano carries a dramatic hazard in its highly populated surroundings. The challenging measurement of the rock density distribution in its summit by muography, in conjunction with data from other geophysical techniques, can help the modeling of possible eruptive dynamics. The MURAVES apparatus consists of an array of three independent and identical muon trackers, with a total sensitive area of 3 square meters. In each tracker, a sequence of 4 XY tracking planes made of plastic scintillators is complemented by a 60 cm thick lead wall inserted between the two downstream planes to improve rejection of background from low-energy muons. The apparatus is currently acquiring data. Preliminary results from the analysis of the first data sample are presented.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
DOE OSTI2025

Structure of Odd-A Ag Isotopes Studied via Algebraic Approaches

The structure of the odd-A silver isotopes Ag 103–115 is discussed within the frame of the interacting boson–fermion model (IBFM). An overview of their key properties is presented, with a particular attention paid to the “ J -1 anomaly”, represented by an abnormal ordering of the lowest 7/2 + and 9/2 + states. By examining previously published data and newly performed calculations, it is demonstrated that the experimentally known level schemes and electromagnetic properties of Ag 103–115 can be reproduced well within IBFM-1 by using a consistent set of model parameters. The contribution of different single-particle orbitals to the structure of the lowest-lying excited nuclear states in Ag 103–115 is discussed. Given that the J-1 anomaly brings down the 7/2 + level from the j −3 multiplet to energies, which can be thermally populated in hot stellar environments, the importance of low-lying excited states in odd-A silver isotopes for astrophysical processes is outlined.

IBFM-1↗
DOE OSTI2022

A search for stellar structures around nine outer halo globular clusters in the Milky Way

We use deep imaging from the Dark Energy Camera to explore the peripheral regions of nine globular clusters in the outer halo of the Milky Way. Apart from Whiting 1 and NGC 7492, which are projected against the Sagittarius stream, we see no evidence for adjacent stellar populations to indicate any of these clusters is associated with coherent tidal debris from a destroyed host dwarf. We also find no evidence for tidal tails around any of the clusters in our sample; however, both NGC 1904 and 6981 appear to possess outer envelopes. Here, motivated by a slew of recent Gaia -based discoveries, we compile a sample of clusters with robust detections of extra-tidal structure, and search for correlations with orbital properties. While we observe that clusters with tidal tails are typically on moderately or very eccentric orbits that are highly inclined to the Galactic plane and often retrograde, these are neither necessary nor sufficient conditions for the formation of extra-tidal structure. That many objects with tidal tails appear to be accreted leads us to speculate that this lack of consistency may stem from the inhomogeneous dynamical history of the Milky Way globular cluster system. Finally, we note that clusters with prominent stellar envelopes detected in ground-based imaging (such as NGC 1851 and 7089) are now all known from Gaia to possess long tidal tails – experimental confirmation that the presence of an extended envelope is indicative of tidal erosion.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2023

Breaking the Ice: A Review of Phages in Polar Ecosystems

Bacteriophages, or phages, are viruses that infect and replicate within bacterial hosts, playing a significant role in regulating microbial populations and ecosystem dynamics. However, phages from extreme environments such as polar regions remain relatively understudied due to challenges such as restricted ecosystem access and low biomass. In this study, understanding the diversity, structure, and functions of polar phages is crucial for advancing our knowledge of the microbial ecology and biogeochemistry of these environments. In this review, we will explore the current state of knowledge on phages from the Arctic and Antarctic, focusing on insights gained from -omic studies, phage isolation, and virus-like particle abundance data. Metagenomic studies of polar environments have revealed a high diversity of phages with unique genetic characteristics, providing insights into their evolutionary and ecological roles. Phage isolation studies have identified novel phage–host interactions and contributed to the discovery of new phage species. Virus-like particle abundance and lysis rate data, on the other hand, have highlighted the importance of phages in regulating bacterial populations and nutrient cycling in polar environments. Overall, this review aims to provide a comprehensive overview of the current state of knowledge about polar phages, and by synthesizing these different sources of information, we can better understand the diversity, dynamics, and functions of polar phages in the context of ongoing climate change, which will help to predict how polar ecosystems and residing phages may respond to future environmental perturbations.

09 BIOMASS FUELS↗
DOE OSTI2020

Data-guided Multi-Map variables for ensemble refinement of molecular movies

Driving molecular dynamics simulations with data-guided collective variables offer a promising strategy to recover thermodynamic information from structure-centric experiments. In this study, the three-dimensional electron density of a protein, as it would be determined by cryo-EM or x-ray crystallography, is used to achieve simultaneously free-energy costs of conformational transitions and refined atomic structures. Unlike previous density-driven molecular dynamics methodologies that determine only the best map-model fits, our work employs the recently developed Multi-Map methodology to monitor concerted movements within equilibrium, non-equilibrium, and enhanced sampling simulations. Construction of all-atom ensembles along the chosen values of the Multi-Map variable enables simultaneous estimation of average properties, as well as real-space refinement of the structures contributing to such averages. Using three proteins of increasing size, we demonstrate that biased simulation along the reaction coordinates derived from electron densities can capture conformational transitions between known intermediates. The simulated pathways appear reversible with minimal hysteresis and require only low-resolution density information to guide the transition. The induced transitions also produce estimates for free energy differences that can be directly compared to experimental observables and population distributions. The refined model quality is superior compared to those found in the Protein Data Bank. We find that the best quantitative agreement with experimental free-energy differences is obtained using medium resolution density information coupled to comparatively large structural transitions. Practical considerations for probing the transitions between multiple intermediate density states are also discussed.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2024

𝑅-matrix analysis of 22 Ne states populated in 18 O ⁡(𝛼,𝛼) resonant elastic scattering

The properties of resonances in the 18 O + 𝛼 interaction are important for analyses of astrophysical processes and for understanding of the development of the 𝛼-cluster structure with addition of neutrons to 4N nuclei. Previous high-energy resolution measurements have not been treated using the contemporary 𝑅-matrix approach. We have performed an 𝑅-matrix analysis of the resonant data [D. Powers, J. K. Bair, J. L. C. Ford, Jr., and H. B. Willard, Phys. Rev. 134, B1237 (1964)] and obtained new data on 15 levels in the excitation region of 11.7–12.5 MeV 22 Ne. It appears that the model calculations did not predict the observed tendency in the 20–22 Ne 𝛼 clustering. This paper is the first step of our program of investigation of the 22 Ne spectrum in resonant reactions.

6 ≤ A ≤ 19↗
DOE OSTI2020

Computational design of closely related proteins that adopt two well-defined but structurally divergent folds

The plasticity of naturally occurring protein structures, which can change shape considerably in response to changes in environmental conditions, is critical to biological function. While computational methods have been used for de novo design of proteins that fold to a single state with a deep free-energy minimum [P.-S. Huang, S. E. Boyken, D. Baker, Nature 537, 320–327 (2016)], and to reengineer natural proteins to alter their dynamics [J. A. Davey, A. M. Damry, N. K. Goto, R. A. Chica, Nat. Chem. Biol.13, 1280–1285 (2017)] or fold [P. A. Alexander, Y. He, Y. Chen, J. Orban, P. N. Bryan, Proc. Natl. Acad. Sci. U.S.A. 106, 21149–21154 (2009)], the de novo design of closely related sequences which adopt well-defined but structurally divergent structures remains an outstanding challenge. We designed closely related sequences (over 94% identity) that can adopt two very different homotrimeric helical bundle conformations—one short (~66 Å height) and the other long (~100 Å height)—reminiscent of the conformational transition of viral fusion proteins. Crystallographic and NMR spectroscopic characterization shows that both the short- and long-state sequences fold as designed. We sought to design bistable sequences for which both states are accessible, and obtained a single designed protein sequence that populates either the short state or the long state depending on the measurement conditions. The design of sequences which are poised to adopt two very different conformations sets the stage for creating large-scale conformational switches between structurally divergent forms.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2020

The Milky Way’s stellar streams and globular clusters do not align in a Vast Polar Structure

ABSTRACT There is increasing evidence that a substantial fraction of Milky Way satellite galaxies align in a rotationally supported plane of satellites, a rare configuration in cosmological simulations of galaxy formation. It has been suggested that other Milky Way substructures (namely young halo globular clusters and stellar/gaseous streams) similarly tend to align with this plane, accordingly dubbed the Vast Polar Structure (VPOS). Using systemic proper motions inferred from Gaia data, we find that globular cluster orbital poles are not clustered in the VPOS direction, though the population with the highest VPOS membership fraction is the young halo clusters (∼30 per cent). We additionally provide a current census of stellar streams, including new streams discovered using the Dark Energy Survey and Gaia data sets, and find that stellar stream normals are also not clustered in the direction of the VPOS normal. We also find that, based on orbit modelling, there is a likely association between NGC 3201 and the Gjöll stellar stream and that, based on its orbital pole, NGC 4147 is likely not a Sagittarius globular cluster. That the Milky Way’s accreted globular clusters and streams do not align in the same planar configuration as its satellites suggests that the plane of satellites is either a particularly stable orbital configuration or a population of recently accreted satellites. Neither of these explanations is particularly likely in light of other recent studies, leaving the plane of satellites problem as one of the more consequential open problems in galaxy formation and cosmology.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2024

A Strong Gravitational Lens Is Worth a Thousand Dark Matter Halos: Inference on Small-scale Structure Using Sequential Methods

Strong gravitational lenses are a singular probe of the Universe’s small-scale structure—they are sensitive to the gravitational effects of low-mass (<10 10 M ⊙ ) halos even without a luminous counterpart. Recent strong-lensing analyses of dark matter structure rely on simulation-based inference (SBI). Modern SBI methods, which leverage neural networks as density estimators, have shown promise in extracting the halo-population signal. However, it is unclear whether the constraints from these models are limited by the methodology or the data. In this study, we introduce an accelerator-optimized simulation pipeline that can generate lens images with realistic subhalo populations in milliseconds. Leveraging this simulator, we identify the main limitation of our fiducial SBI analysis: training set size. We then adopt a sequential neural posterior estimation (SNPE) approach, allowing us to refine the training distribution to align with the observed data. Using only one-fifth as many mock Hubble Space Telescope images, SNPE matches the constraints on the low-mass halo population produced by our best nonsequential model. Our experiments suggest that an over 3 order-of-magnitude increase in training set size and GPU hours would be required to achieve an equivalent result without sequential methods. While the full potential of the existing lens sample remains to be explored, the notable improvement in constraining power enabled by our sequential approach highlights that current constraints are limited primarily by methodology and not the data itself. Moreover, our results emphasize the need to treat training set generation and model optimization as interconnected stages of any cosmological analysis using SBI.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2023

Detection of open cluster rotation fields from Gaia EDR3 proper motions

Context: Most stars from in groups which with time disperse, building the field population of their host galaxy. In the Milky Way, open clusters have been continuously forming in the disk up to the present time, providing it with stars spanning a broad range of ages and masses. Observations of the details of cluster dissolution are, however, scarce. One of the main difficulties is obtaining a detailed characterisation of the internal cluster kinematics, which requires very high-quality proper motions. For open clusters, which are typically loose groups with tens to hundreds of members, there is the additional difficulty of inferring kinematic structures from sparse and irregular distributions of stars. Aims: Here, we aim to analyse internal stellar kinematics of open clusters, and identify rotation, expansion, or contraction patterns. Methods: We use Gaia Early Data Release 3 (EDR3) astrometry and integrated nested Laplace approximations to perform vector-field inference and create spatio-kinematic maps of 1237 open clusters. The sample is composed of clusters for which individual stellar memberships were already known, thus minimising contamination from field stars in the velocity maps. Projection effects were corrected using EDR3 data complemented with radial velocities from Gaia Data Release 2 and other surveys. Results: We report the detection of rotation patterns in eight open clusters. Nine additional clusters display possible rotation signs. We also observe 14 expanding clusters, with 15 other objects showing possible expansion patterns. Contraction is evident in two clusters, with one additional cluster presenting a more uncertain detection. In total, 53 clusters are found to display kinematic structures. Within these, elongated spatial distributions suggesting tidal tails are found in five clusters. These results indicate that the approach developed here can recover kinematic patterns from noisy vector fields, as those from astrometric measurements of open clusters or other stellar or galactic populations, thus offering a powerful probe for exploring the internal kinematics and dynamics of these types of objects.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2022

Differentiable Predictions for Large Scale Structure with SHAMNet

In simulation-based models of the galaxy-halo connection, theoretical predictions for galaxy clustering and lensing are typically made based on Monte Carlo realizations of a mock universe. In this paper, we use Subhalo Abundance Matching (SHAM) as a toy model to introduce an alternative to stochastic predictions based on mock population, demonstrating how to make simulation-based predictions for clustering and lensing that are both exact and differentiable with respect to the parameters of the model. Conventional implementations of SHAM are based on iterative algorithms such as Richardson-Lucy deconvolution; here we use the JAX library for automatic differentiation to train SHAMNet, a neural network that accurately approximates the stellar-to-halo mass relation (SMHM) defined by abundance matching. In our approach to making differentiable predictions of large-scale structure, we map parameterized PDFs onto each simulated halo, and calculate gradients of summary statistics of the galaxy distribution by using autodiff to propagate the gradients of the SMHM through the statistical estimators used to measure one- and two-point functions. Our techniques are quite general, and we conclude with an overview of how they can be applied in tandem with more complex, higher-dimensional models, creating the capability to make differentiable predictions for the multi-wavelength universe of galaxies.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2021

Elementary Composite Binary and Grain Alignment Locked in Dust Growth

Abstract Planets are known to grow out of a star-encircling disk of the gas and dust inherited from an interstellar cloud; their formation is thought to begin with coagulation of submicron dust grains into aggregates, the first foundational stage of planet formation. However, with nanoscale and submicron solids unobservable directly in the interstellar medium (ISM) and protoplanetary disks, how dust grains grow is unclear, as are the morphology and structure of interstellar grains and the whereabouts and form of “missing iron.” Here we show an elementary composite binary in 3D sub-10 nm detail—and the alignments of its two subunits and nanoinclusions and a population of elongated composite grains locked in a primitive cosmic dust particle—noninvasively uncovered with phase-contrast X-ray nanotomography. The binary comprises a pair of oblate, quasi-spheroidal grains whose alignment and shape meet the astrophysical constraints on polarizing interstellar grains. Each member of the pair contains a high-density core of octahedral nanocrystals whose twin relationship is consistent with the magnetite’s diagnostic property at low temperatures, with a mantle exhibiting nanoscale heterogeneities, rounded edges, and pitted surfaces. This elongated binary evidently formed from an axially aligned collision of the two similar composite grains whose core–mantle structure and density gradients are consistent with interstellar processes and astronomical evidence for differential depletion. Our findings suggest that the ISM is threaded with dust grains containing preferentially oriented iron-rich magnetic nanocrystals that hold answers to astronomical problems from dust evolution, grain alignment, and the structure of magnetic fields to planetesimal growth.

Hu, Z. W. (ORCID:0000000278648830)↗
DOE OSTI2023

TA-03-0016 Ion Beam Facility D&D: Sphere of Influence [Slides]

TA-03-0016 Ion Beam Facility: This structure is 70 years old and has been vacant since 1994 and was excessed in 1999. The Ion Beam Facility (IBF) was built in 1953 to support essential post-World War II scientific research and houses LANL's original vertical and tandem Van de Graaff accelerators. The vertical Van de Graaff accelerator was built under the direction of Joseph McKibben from 1948 to 1952 and was used for applied nuclear physics experiments. The Ion Beam facility is considered by NNSA as one of its highest risk process contaminated facilities within the complex. Ion Beam is a radiological facility adjacent to the LANL Occupational Medicine Facility on the south side of TA-3, the most populated technical area at LANL. It poses an undesirable fire risk, especially given its close location to a rugged wooded canyon and difficulties in fighting a wildland fire in such a location. Demolition of this structure will provide a constructable site for critical mission radiological laboratory spaces.

99 GENERAL AND MISCELLANEOUS↗