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DOE OSTI2022

Recent progress in L-H transition studies at JET: Tritium, Helium, Hydrogen and Deuterium

In this report we present an overview of results from a series of L-H transition experiments undertaken at JET since the installation of the ITER-like-wall (JET-ILW), with Beryllium wall tiles and a Tungsten divertor. Tritium, Helium and Deuterium plasmas have been investigated. Initial results in Tritium show ohmic L-H transitions at low density and the power threshold for the L-H transition (P LH ) is lower in Tritium plasmas than in Deuterium ones at low densities, while we still lack contrasted data to provide a scaling at high densities. In Helium plasmas there is a notable shift of the density at which the power threshold is minimum (n e,min ) to higher values relative to Deuterium and Hydrogen references. Above n e,min (He) the L-H power threshold at high densities is similar for D and He plasmas. Transport modelling in slab geometry shows that in Helium neoclassical transport competes with interchange-driven transport, unlike in Hydrogen isotopes. Measurements of the radial electric field in Deuterium plasmas show that E r shear is not a good indicator of proximity to the L-H transition. Transport analysis of ion heat flux in Deuterium plasmas show a non-linearity as density is decreased below n e,min . Lastly, a regression of the JET-ILW Deuterium data is compared to the 2008 ITPA scaling law.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

DOE OSTI2022

Dependence of scrape-off layer profiles and turbulence on gas fuelling in high density H-mode regimes in TCV

A set of high density, highly shaped H-mode discharges has been performed in the TCV tokamak with the aim of assessing the effects of increasing divertor neutral recycling on the properties of upstream inter-ELM scrape-off layer (SOL) profiles and transport. An increase of divertor neutral pressure has been correlated with the evolution of separatrix properties and turbulence level. The latter has been quantified by means of the α t parameter introduced in (Eich 2020 Nucl. Fusion 60 056016), describing the contribution of resistive-interchange turbulence in the SOL relative to drift wave transport. The analysis reveals a general broadening of the upstream SOL profiles as α t increases, with the SOL power width measured by the vertical IR thermography system increasing significantly. In a similar way, the upstream density profile widens in the near SOL, whereas in the far SOL a density shoulder is observed to progressively form and increase in amplitude. This behaviour is associated with an enhancement of far SOL turbulent transport in the form of blob-filaments travelling radially faster across the far SOL and becoming bigger at higher α t . Finally, the detected filaments, evaluated from the fast reciprocating probe at the outer midplane, are determined to mostly belong to the resistive ballooning and resistive X-point regimes.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

DOE OSTI2024

Quasi-mode evolution in a stochastic magnetic field

Abstract We present a multi-scale model of quasi-mode evolution in a stochastic magnetic field. The similarity between a quasi-mode and a ballooning mode enables us to address the challenges arising from the disparate geometries in the theories of ballooning modes in the presence of resonant magnetic perturbations. We obtain useful insights into our understanding of ballooning mode dynamics in a stochastic background. To maintain quasi-neutrality at all scales, the beat between the quasi-mode and the stochastic magnetic field drives microturbulence, which drives the turbulent background that promotes mixing and damps the quasi-mode. As a result of the broad mode structure of the quasi-mode, the turbulent viscosity and the turbulent diffusivity produced by the microturbulence are larger than those in our related study on resistive interchange modes. The stochastic magnetic field can also enhance the effective plasma inertia and reduce the effective drive, thereby slowing the mode growth. A nontrivial correlation between the microturbulence and the magnetic perturbations is shown to develop. This could account for the reduction in the Jensen–Shannon complexity of pedestal turbulence in the Resonant Magnetic Perturbation Edge-Localized Mode suppression phase observed in recent experiments. Directions for future experimental and theoretical studies are suggested.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

DOE OSTI2024

Generation of shear flows induced by AE / EPM in LHD plasma

The generation of shear flows (SFs) by Alfven Eigenmodes (AEs) and energetic particle modes (EPMs) have important effects on the operation of future nuclear fusion reactors, because SFs regulate the saturation of the AEs/EPMs, the transport of EPs and thermal plasma, as well as the formation of transport barriers among other consequences. The aim of this study is the analysis of SFs generation during the saturation phase of AEs and EPMs in LHD plasma. Experiments performed in the 23rd and 24th LHD experimental campaigns are dedicated to explore the destabilization of AEs/EPMs in discharges with different heating patterns, thermal plasma and magnetic field configurations. In particular, the shots 176490 and 179697 show the destabilization of MHD bursts and energetic-ion-driven resistive interchange modes (EIC), respectively. Charge exchange spectroscopy measurements in both discharges indicate that the generation of SFs by AE/EPM is uncorrelated with the perturbation induced by the neutral beam injector (NBI). Nonlinear simulations performed using the gyro-fluid code FAR3d show the generation of zonal structures, especially SFs, induced during the saturation phase of Toroidal Alfven Eigenmodes (TAEs) triggered in the MHD burst as well as by the 1/1 EIC in the bursting phase. The simulations indicate that SFs are caused by the radial electric fields powered by energy transfers from the unstable AE/EPM towards the thermal plasma. The strongest SFs are measured during the EIC bursting phase once the 1/1 EPM overlaps with nearby resonances at the plasma periphery. Likewise, the largest SFs during the MHD burst are observed once TAEs radially overlap in the inner-middle plasma region.

AE↗

DOE OSTI2013

Feynman Amplitude Approach to study the Passage of a Jet in a Medium

In the Feynman amplitude approach for coherent collisions of a jet with medium partons, the Bose-Einstein symmetry with respect to the interchange of the exchanged bosons leads to a destructive interference of the amplitudes in most regions of the phase space but a constructive interference in some other regions. As a consequence, there is a collective longitudinal momentum transfer to the scatterers along the jet direction, each scatterer carrying a substantial fraction of the incident jet longitudinal momentum. The manifestation of the Bose-Einstein interference may have been observed in angular correlations of hadrons associated with a high-pT trigger in high-energy collisions at RHIC and LHC.

Wong, Cheuk-Yin↗

DOE OSTI2024

Property Variations in Modern REBCO Coated Conductors from Multiple Manufacturers

The complex, multilayer structure of REBCO Coated Conductor (CC) poses significant challenges in the fabrication of high magnetic field devices where large stresses may initiate various forms of damage. Our goal is to peer below the cartoon representations of CC so that, amongst other things, we might better understand whether a CC from one manufacturer is interchangeable with that from another. This involves knowledge of a broad range of electromagnetic, geometric, microstructural, and J c (θ,B,T) properties, and their variations that collectively pose challenges for the fault tolerance of REBCO CC devices. Accordingly, comparative measurements of J c , visualization of flux penetration with Magneto-Optical Imaging (MOI), tape geometry from Scanning Electron Microscopy (SEM) of polished cross-sections, and extensive optical microscopy was performed on recently purchased samples from multiple manufacturers. Our analyses reveal many deviations from or characteristics absent from manufacturers’ specifications, while a comparison of different manufacturers’ mechanically and laser slit tapes shows a diverse array of slitting characteristics amongst the manufacturers and variation in properties those made to the same specification. Laser slit tapes from several manufacturers reveal ablated edges with damaged regions extending up to 50 μm, comparable to the damaged region found in the mechanically slit CC of this study. Overall, the aim of this study is to flesh out appropriate ways to understand the real conductor below the manufacturers’ cartoons to avoid surprises in our REBCO CC coil development program. The goal of this work was to perform a broad array of characterizations of the type needed for validation of purpose for making high field magnets: to our surprise we found a wide range of properties which greatly impact the mechanical strength and electromagnetic performance of solenoids composed of these conductors and reinforced the need for a broad characterization program for each conductor prior to its implementation.

Bradford, G.↗

DOE OSTI2014

THE KOZAI-LIDOV MECHANISM IN HYDRODYNAMICAL DISKS

We use three-dimensional hydrodynamical simulations to show that a highly misaligned accretion disk around one component of a binary system can exhibit global Kozai-Lidov cycles, where the inclination and eccentricity of the disk are interchanged periodically. This has important implications for accreting systems on all scales, for example, the formation of planets and satellites in circumstellar and circumplanetary disks, outbursts in X-ray binary systems, and accretion onto supermassive black holes.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2015

PSEUDOSTREAMERS AS THE SOURCE OF A SEPARATE CLASS OF SOLAR CORONAL MASS EJECTIONS

Using white-light and extreme-ultraviolet imaging observations, we confirm that pseudostreamers (streamers that separate coronal holes of the same polarity) give rise to a different type of coronal mass ejection (CME) from that associated with helmet streamers (defined as separating coronal holes of opposite polarity). Whereas helmet streamers are the source of the familiar bubble-shaped CMEs characterized by gradual acceleration and a three-part structure, pseudostreamers produce narrower, fanlike ejections with roughly constant speeds. These ejections, which are typically triggered by underlying filament eruptions or small, flaring active regions, are confined laterally and channeled outward by the like-polarity open flux that converges onto the pseudostreamer plasma sheet from both sides. In contrast, helmet streamer CMEs are centered on the relatively weak field around the heliospheric current sheet and thus undergo greater lateral expansion. Pseudostreamer ejections have a morphological resemblance to white-light jets from coronal holes; however, unlike the latter, they are not primarily driven by interchange reconnection, and tend to have larger widths (∼20°–30°), lower speeds (∼250–700 km s{sup −1}), and more complex internal structure.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2016

Rare HIV-1 Subtype J Genomes and a New H/U/CRF02_AG Recombinant Genome Suggests an Ancient Origin of HIV-1 in Angola

Angola has an extremely diverse HIV-1 epidemic fueled in part by the frequent interchange of people with the Democratic Republic of Congo (DRC) and Republic of Congo (RC). Characterization of HIV-1 strains circulating in Angola should help to better understand the origin of HIV-1 subtypes and recombinant forms and their transmission dynamics. In this work we characterize the first near full-length HIV-1 genomic sequences from HIV-1 infected individuals from Angola. Samples were obtained in 1993 from three HIV-1 infected patients living in Cabinda, Angola. Near full-length genomic sequences were obtained from virus isolates. Maximum likelihood phylogenetic tree inference and analyses of potential recombination patterns were performed to evaluate the sequence classifications and origins. Phylogenetic and recombination analyses revealed that one virus was a pure subtype J, another mostly subtype J with a small uncertain region, and the final virus was classified as a H/U/CRF02_AG recombinant. Consistent with their epidemiological data, the subtype J sequences were more closely related to each other than to other J sequences previously published. Based on the env gene, taxa from Angola occur throughout the global subtype J phylogeny. HIV-1 subtypes J and H are present in Angola at low levels since at least 1993. Low transmission efficiency and/or high recombination potential may explain their limited epidemic success in Angola and worldwide. The high diversity of rare subtypes in Angola suggests that Angola was part of the early establishment of the HIV-1 pandemic.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2018

The effects of magnetic fields and protostellar feedback on low-mass cluster formation

In this paper, we present a large suite of simulations of the formation of low-mass star clusters. Our simulations include an extensive set of physical processes – magnetohydrodynamics, radiative transfer, and protostellar outflows – and span a wide range of virial parameters and magnetic field strengths. Comparing the outcomes of our simulations to observations, we find that simulations remaining close to virial balance throughout their history produce star formation efficiencies and initial mass function (IMF) peaks that are stable in time and in reasonable agreement with observations. Our results indicate that small-scale dissipation effects near the protostellar surface provide a feedback loop for stabilizing the star formation efficiency. This is true regardless of whether the balance is maintained by input of energy from large-scale forcing or by strong magnetic fields that inhibit collapse. In contrast, simulations that leave virial balance and undergo runaway collapse form stars too efficiently and produce an IMF that becomes increasingly top heavy with time. In all cases, we find that the competition between magnetic flux advection towards the protostar and outward advection due to magnetic interchange instabilities, and the competition between turbulent amplification and reconnection close to newly formed protostars renders the local magnetic field structure insensitive to the strength of the large-scale field, ensuring that radiation is always more important than magnetic support in setting the fragmentation scale and thus the IMF peak mass. The statistics of multiple stellar systems are similarly insensitive to variations in the initial conditions and generally agree with observations within the range of statistical uncertainty.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2014

Modification-dependent restriction endonuclease, MspJI, flips 5-methylcytosine out of the DNA helix

MspJI belongs to a family of restriction enzymes that cleave DNA containing 5-methylcytosine (5mC) or 5-hydroxymethylcytosine (5hmC). MspJI is specific for the sequence 5(h)mC-N-N-G or A and cleaves with some variability 9/13 nucleotides downstream. Earlier, we reported the crystal structure of MspJI without DNA and proposed how it might recognize this sequence and catalyze cleavage. Here we report its co-crystal structure with a 27-base pair oligonucleotide containing 5mC. This structure confirms that MspJI acts as a homotetramer and that the modified cytosine is flipped from the DNA helix into an SRA-like-binding pocket. We expected the structure to reveal two DNA molecules bound specifically to the tetramer and engaged with the enzyme's two DNA-cleavage sites. A coincidence of crystal packing precluded this organization, however. We found that each DNA molecule interacted with two adjacent tetramers, binding one specifically and the other non-specifically. The latter interaction, which prevented cleavage-site engagement, also involved base flipping and might represent the sequence-interrogation phase that precedes specific recognition. MspJI is unusual in that DNA molecules are recognized and cleaved by different subunits. Such interchange of function might explain how other complex multimeric restriction enzymes act.

Horton, J. R.↗

DOE OSTI2024

The structural OFF and ON states of myosin can be decoupled from the biochemical super- and disordered-relaxed states

Abstract There is a growing awareness that both thick-filament and classical thin-filament regulations play central roles in modulating muscle contraction. Myosin ATPase assays have demonstrated that under relaxed conditions, myosin may reside either in a high-energy-consuming disordered-relaxed (DRX) state available for binding actin to generate force or in an energy-sparing super-relaxed (SRX) state unavailable for actin binding. X-ray diffraction studies have shown that the majority of myosin heads are in a quasi-helically ordered OFF state in a resting muscle and that this helical ordering is lost when myosin heads are turned ON for contraction. It has been assumed that myosin heads in SRX and DRX states are equivalent to the OFF and ON states, respectively, and the terms have been used interchangeably. In this study, we use X-ray diffraction and ATP turnover assays to track the structural and biochemical transitions of myosin heads, respectively, induced with either omecamtiv mecarbil (OM) or piperine in relaxed porcine myocardium. We find that while OM and piperine induce dramatic shifts of myosin heads from the OFF to the ON state, there are no appreciable changes in the population of myosin heads in the SRX and DRX states in both unloaded and loaded preparations. Our results show that biochemically defined SRX and DRX can be decoupled from structurally defined OFF and ON states. In summary, while SRX/DRX and OFF/ON transitions can be correlated in some cases, these two phenomena are measured using different approaches, reflect different properties of the thick filament, and should be investigated and interpreted separately.

Jani, Vivek P. (ORCID:0000000238114973)↗

DOE OSTI2023

Comparison of sleep parameters from wrist-worn ActiGraph and Actiwatch devices

Abstract Sleep and physical activity, two important health behaviors, are often studied independently using different accelerometer types and body locations. Understanding whether accelerometers designed for monitoring each behavior can provide similar sleep parameter estimates may help determine whether one device can be used to measure both behaviors. Three hundred and thirty one adults (70.7 ± 13.7 years) from the Baltimore Longitudinal Study of Aging wore the ActiGraph GT9X Link and the Actiwatch 2 simultaneously on the non-dominant wrist for 7.0 ± 1.6 nights. Total sleep time (TST), wake after sleep onset (WASO), sleep efficiency, number of wake bouts, mean wake bout length, and sleep fragmentation index (SFI) were extracted from ActiGraph using the Cole–Kripke algorithm and from Actiwatch using the software default algorithm. These parameters were compared using paired t-tests, Bland–Altman plots, and Deming regression models. Stratified analyses were performed by age, sex, and body mass index (BMI). Compared to the Actiwatch, the ActiGraph estimated comparable TST and sleep efficiency, but fewer wake bouts, longer WASO, longer wake bout length, and higher SFI (all p < .001). Both devices estimated similar 1-min and 1% differences between participants for TST and SFI (β = 0.99, 95% CI: 0.95, 1.03, and 0.91, 1.13, respectively), but not for other parameters. These differences varied by age, sex, and/or BMI. The ActiGraph and the Actiwatch provide comparable absolute and relative estimates of TST, but not other parameters. The discrepancies could result from device differences in movement collection and/or sleep scoring algorithms. Further comparison and calibration is required before these devices can be used interchangeably.

Liu, Fangyu (ORCID:0000000315541478)↗

DOE OSTI2018

Characterization of C-ring component assembly in flagellar motors from amino acid coevolution

Bacterial flagellar motility, an important virulence factor, is energized by a rotary motor localized within the flagellar basal body. The rotor module consists of a large framework (the C-ring), composed of the FliG, FliM and FliN proteins. FliN and FliM contacts the FliG torque ring to control the direction of flagellar rotation. We report that structure-based models constrained only by residue coevolution can recover the binding interface of atomic X-ray dimer complexes with remarkable accuracy (approx. 1 Å RMSD). We propose a model for FliM–FliN heterodimerization, which agrees accurately with homologous interfaces as well as in situ cross-linking experiments, and hence supports a proposed architecture for the lower portion of the C-ring. Furthermore, this approach allowed the identification of two discrete and interchangeable homodimerization interfaces between FliM middle domains that agree with experimental measurements and might be associated with C-ring directional switching dynamics triggered upon binding of CheY signal protein. Our findings provide structural details of complex formation at the C-ring that have been difficult to obtain with previous methodologies and clarify the architectural principle that underpins the ultra-sensitive allostery exhibited by this ring assembly that controls the clockwise or counterclockwise rotation of flagella.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2025

51 V NMR evidence for interlayer-modulated charge order and a first-order low-temperature transition in CsV 3 ⁢Sb 5

Charge order in the kagome superconductor CsV 3 ⁢Sb 5 exhibits a complex three-dimensional organization and intermediate-temperature anomalies whose bulk character has remained unsettled. We use orientation-dependent 51 V NMR as a site-selective probe to determine the stacking of the charge density wave (CDW) state and its thermal evolution. Below 𝑇 CDW ≈ 94K, the field-linear splitting of the 51 V central transition together with the anisotropy of the Knight shift tensor identify an interlayer-modulated 3⁢𝑞 CDW whose local environments are consistent with a four-layer 2 × 2 × 4 stacking with mixed trihexagonal/Star-of-David distortions, in agreement with synchrotron x-ray determinations. For comparison, RbV 3 ⁢Sb 5 serves as a reference exhibiting a uniform trihexagonal 2 × 2 × 2 stacking, allowing us to isolate features unique to the 2 × 2 × 4 state in CsV 3 ⁢Sb 5 . With 𝐻 0 ∥ 𝑐, the 51 V quadrupolar satellites through the intermediate temperature scale near 𝑇 CO ≈ 65K reorganize into two well-resolved electric-field-gradient manifolds that coexist over a finite interval; their relative spectral weights interchange on cooling while the total integrated satellite intensity remains conserved and 𝜈 𝑄 within each manifold is nearly temperature independent. The coexistence without critical broadening, together with conserved intensity, provides bulk evidence consistent with a first-order charge-order transition near 𝑇 CO . Our measurements do not resolve whether this lower-temperature transition corresponds to a distinct in-plane order or a reorganization of the 3⁢𝑞 state; rather, they delimit this window and provide bulk, site-resolved constraints that connect prior reported anomalies to a thermodynamic first-order transition.

Wang, Xiaoling [California State Univ., East Bay, ↗

DOE OSTI2025

Flavor diagonal nucleon charges using clover fermions on MILC HISQ ensembles

We present lattice results for the flavor diagonal charges of the proton from the analysis of eight ensembles generated using 2+1+1-flavors of highly improved staggered quarks by the MILC Collaboration. The calculation includes all the needed connected and disconnected contributions to nucleon three-point function. For extracting matrix elements using fits to the spectral decomposition of these correlation functions, two strategies to remove excited state contributions are employed and compared. To renormalize these charges, the 2+1-flavor mixing matrix is calculated in the regularization independent symmetric momentum subtraction intermediate scheme on the lattice. The final results are presented in the $\overline{MS}$ scheme at scale 2 GeV. The axial charges for the proton are $𝑔$$^{𝑢}_{𝐴}$ = 0.781⁢(25), $𝑔$$^{𝑑}_{𝐴}$ =−0.440⁢(39), and $𝑔$$^{𝑠}_{𝐴}$ = −0.055⁢(9); the tensor charges are $𝑔$$^{𝑢}_{𝑇}$ = 0.782⁢(28), $𝑔$$^{𝑑}_{𝑇}$ = −0.195⁢(16), and $𝑔$$^{𝑠}_{𝑇}$ = −0.0016⁢(12); and the scalar charges are $𝑔$$^{𝑢}_{𝑆}$ = 9.39⁢(88), $𝑔$$^{𝑑}_{𝑆}$ = 8.84⁢(93), and $𝑔$$^{𝑠}_{𝑆}$ = 0.37⁢(14). Results for the neutron are given by the 𝑢 ↔ 𝑑 interchange. Results for the sigma terms are 𝜎 𝜋⁢𝑁 | standard = 42⁢(6) MeV from a “standard” analysis and 𝜎 𝜋⁢𝑁 | 𝑁⁢𝜋 = 61⁢(6) MeV from an “𝑁⁢𝜋” analysis that includes the contributions of multihadron 𝑁⁢𝜋 excited states as motivated by chiral perturbation theory. Our preferred value 𝜎 𝜋⁢𝑁 | 𝑁⁢𝜋 is consistent with the phenomenological extraction from 𝜋 −𝑁 scattering data. The strangeness content of the proton, for which the standard analysis is appropriate, is 𝜎 𝑠 | standard = 35⁢(13) MeV.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2020

Approximate quantum circuit synthesis using block encodings

One of the challenges in quantum computing is the synthesis of unitary operators into quantum circuits with polylogarithmic gate complexity. Exact synthesis of generic unitaries requires an exponential number of gates in general. We propose a novel approximate quantum circuit synthesis technique by relaxing the unitary constraints and interchanging them for ancilla qubits via block encodings. This approach combines smaller block encodings, which are easier to synthesize, into quantum circuits for larger operators. Due to the use of block encodings, our technique is not limited to unitary operators and can be applied for the synthesis of arbitrary operators. Overall, we show that operators which can be approximated by a canonical polyadic expression with a polylogarithmic number of terms can be synthesized with polylogarithmic gate complexity with respect to the matrix dimension.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

DOE OSTI2019

Circularly Polarized Thermal Radiation From Nonequilibrium Coupled Antennas

Circularly polarized light can be obtained by using either polarization conversion or structural chirality. Here we reveal a fundamentally unrelated mechanism of generating circularly polarized light using coupled nonequilibrium sources. We show that thermal emission from a compact dimer of subwavelength, anisotropic antennas can be highly circularly polarized when the antennas are at unequal temperatures. Furthermore, the handedness of emitted light is flipped upon interchanging the temperatures of the antennas, thereby enabling reconfigurability of the polarization state lacked by most circularly polarized light sources. Furthermore, we describe the fundamental origin of this mechanism using rigorous fluctuational electrodynamic analysis and further provide practical examples for its experimental implementation. Apart from the technology applications in reconfigurable devices, communication, and sensing, this work motivates new inquiries of angular-momentum-related thermal-radiation phenomena using thermal nonequilibrium, without applying magnetic field.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗