Engineering Papers⌕ Search

SEARCH · Engineering Papers

Results for “COMMUNITIES”

Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 523 records · Page 29
All sourcesNASA NTRSDOE OSTI
DOE OSTI2016

Community-Scale Attic Retrofit and Home Energy Upgrade Data Mining - Hot Dry Climate

Retrofitting is an essential element of any comprehensive strategy for improving residential energy efficiency. The residential retrofit market is still developing, and program managers must develop innovative strategies to increase uptake and promote economies of scale. Residential retrofitting remains a challenging proposition to sell to homeowners, because awareness levels are low and financial incentives are lacking. The U.S. Department of Energy's Building America research team, Alliance for Residential Building Innovation (ARBI), implemented a project to increase residential retrofits in Davis, California. The project used a neighborhood-focused strategy for implementation and a low-cost retrofit program that focused on upgraded attic insulation and duct sealing. ARBI worked with a community partner, the not-for-profit Cool Davis Initiative, as well as selected area contractors to implement a strategy that sought to capitalize on the strong local expertise of partners and the unique aspects of the Davis, California, community. Working with community partners also allowed ARBI to collect and analyze data about effective messaging tactics for community-based retrofit programs. ARBI expected this project, called Retrofit Your Attic, to achieve higher uptake than other retrofit projects, because it emphasized a low-cost, one-measure retrofit program. However, this was not the case. The program used a strategy that focused on attics-including air sealing, duct sealing, and attic insulation-as a low-cost entry for homeowners to complete home retrofits. The price was kept below $4,000 after incentives; both contractors in the program offered the same price. The program completed only five retrofits. Interestingly, none of those homeowners used the one-measure strategy. All five homeowners were concerned about cost, comfort, and energy savings and included additional measures in their retrofits. The low-cost, one-measure strategy did not increase the uptake among homeowners, even in a well-educated, affluent community such as Davis. This project has two primary components. One is to complete attic retrofits on a community scale in the hot-dry climate on Davis, CA. Sufficient data will be collected on these projects to include them in the BAFDR. Additionally, ARBI is working with contractors to obtain building and utility data from a large set of retrofit projects in CA (hot-dry). These projects are to be uploaded into the BAFDR.

affordable housing↗
DOE OSTI2014

Cellulolytic potential under environmental changes in microbial communities from grassland litter

In many ecosystems, global changes are likely to profoundly affect microorganisms. In Southern California, changes in precipitation and nitrogen deposition may influence the composition and functional potential of microbial communities and their resulting ability to degrade plant material. To test whether such environmental changes impact the distribution of functional groups involved in leaf litter degradation, we determined how the genomic diversity of microbial communities in a semi-arid grassland ecosystem changed under reduced precipitation or increased N deposition. We monitored communities seasonally over a period of 2 years to place environmental change responses into the context of natural variation. Fungal and bacterial communities displayed strong seasonal patterns, Fungi being mostly detected during the dry season whereas Bacteria were common during wet periods. Most putative cellulose degraders were associated with 33 bacterial genera and predicted to constitute 18% of the microbial community. Precipitation reduction reduced bacterial abundance and cellulolytic potential whereas nitrogen addition did not affect the cellulolytic potential of the microbial community. Finally, we detected a strong correlation between the frequencies of genera of putative cellulose degraders and cellulase genes. Thus, microbial taxonomic composition was predictive of cellulolytic potential. This work provides a framework for how environmental changes affect microorganisms responsible for plant litter deconstruction.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2017

Bacterial Community Dynamics in Dichloromethane-Contaminated Groundwater Undergoing Natural Attenuation

The uncontrolled release of the industrial solvent methylene chloride, also known as dichloromethane (DCM), has resulted in widespread groundwater contamination in the United States. Here we investigate the role of groundwater bacterial communities in the natural attenuation of DCM at an undisclosed manufacturing site in New Jersey. Here, we investigate the bacterial community structure of groundwater samples differentially contaminated with DCM to better understand the biodegradation potential of these autochthonous bacterial communities. Bacterial community analysis was completed using high-throughput sequencing of the 16S rRNA gene of groundwater samples (n = 26) with DCM contamination ranging from 0.89 to 9,800,000 μg/L. Significant DCM concentration-driven shifts in overall bacterial community structure were identified between samples, including an increase in the abundance of Firmicutes within the most contaminated samples. And across all samples, a total of 6,134 unique operational taxonomic units (OTUs) were identified, with 16 taxa having strong correlations with increased DCM concentration. Putative DCM degraders such as Pseudomonas, Dehalobacterium and Desulfovibrio were present within groundwater across all levels of DCM contamination. Interestingly, each of these taxa dominated specific DCM contamination ranges respectively. Potential DCM degrading lineages yet to be cited specifically as a DCM degrading organisms, such as the Desulfosporosinus, thrived within the most heavily contaminated groundwater samples. Co-occurrence network analysis revealed aerobic and anaerobic bacterial taxa with DCM-degrading potential were present at the study site. Our 16S rRNA gene survey serves as the first in situ bacterial community assessment of contaminated groundwater harboring DCM concentrations ranging over seven orders of magnitude. Diversity analyses revealed known as well as potentially novel DCM degrading taxa within defined DCM concentration ranges, indicating niche-specific responses of these autochthonous populations. Altogether, our findings suggest that monitored natural attenuation is an appropriate remediation strategy for DCM contamination, and that high-throughput sequencing technologies are a robust method for assessing the potential role of biodegrading bacterial assemblages in the apparent reduction of DCM concentrations in environmental scenarios.

16S rRNA↗
DOE OSTI2025

Framework for Assessing Impact of Wave-Powered Desalination on Resilience of Coastal Communities

Coastal communities face unique challenges in maintaining continuous service from critical infrastructure. This research advances capabilities for evaluating the impact of using wave energy to desalinate water on the resilience of coastal communities. The study focuses on the feasibility of using wave energy conversion to provide drinking water to communities in need and applying resilience metrics to quantify its impact on the community. To assess the feasibility of wave-powered desalination, this research couples the open-source software Wave Energy Converter SIMulator (WEC-Sim) and Water Network Tool for Resilience (WNTR). This research explores variations in both the wave resource (location, seasonality, and duration) and the ability to maintain drinking water service during a disruption scenario by applying the simulation framework to three case studies, which are based on communities in Puerto Rico. The simulation framework provides a contextualized assessment of the ability of wave-powered desalination to improve the resilience of coastal communities, which can serve as a methodology for future studies seeking the integration of wave-powered desalination with water distribution systems.

16 TIDAL AND WAVE POWER↗
DOE OSTI2026

Advanced-Research-on-Integrated-Energy-Systems-Based Analysis to Support Resilient System Upgrades: Energy to Communities Energyshed In-Depth Partnership with Molokai, Hawaii

The Molokai, Hawaii, Energy to Communities (E2C) Energyshed project represents a collaborative effort between the National Laboratory of the Rockies, Shake Energy Collaborative, the Molokai Clean Energy Hui, Sustainable Molokai, and Ho'ahu Energy Cooperative Molokai to advance Molokai's Community Energy Resilience Action Plan (CERAP). Supported by Hawaiian Electric Company and the Hawaii State Energy Office, the initiative aims to develop a community-defined portfolio of renewable energy solutions that enhance energy resilience while aligning with the Hawaiian Electric Integrated Grid Plan (IGP) and Molokai's energy goals. Phase 1 focused on technical analyses and community engagement to co-design feasible energy scenarios. Challenges such as grid upgrades, storage sizing, and inverter ride-through standards were addressed to align technical and operational requirements with community preferences. The project equips Molokai with actionable data and insights to implement energy initiatives while ensuring resilient and culturally informed solutions. Future efforts aim to finalize project designs, secure interconnection agreements, and deploy energy projects that reflect community priorities and technical feasibility.

24 POWER TRANSMISSION AND DISTRIBUTION↗
DOE OSTI2023

Signatures of prescribed fire in the microbial communities of Cornus florida are largely undetectable five months post-fire

Prescribed burn is a management tool that influences the physical structure and composition of forest plant communities and their associated microorganisms. Plant-associated microorganisms aid in host plant disease tolerance and increase nutrient availability. The effects of prescribed burn on microorganisms associated with native ecologically and economically important tree species, such as Cornus florida L. (flowering dogwood), are not well understood, particularly in aboveground plant tissues (e.g., leaf, stem, and bark tissues). The objective of this study was to use 16S rRNA gene and ITS2 region sequencing to evaluate changes in bacterial and fungal communities of five different flowering dogwood-associated niches (soil, roots, bark, stem, and leaves) five months following a prescribed burn treatment. The alpha- and beta-diversity of root bacterial/archaeal communities differed significantly between prescribed burn and unburned control-treated trees. In these bacterial/archaeal root communities, we also detected a significantly higher relative abundance of sequences identified as Acidothermaceae, a family of thermophilic bacteria. No significant differences were detected between prescribed burn-treated and unburned control trees in bulk soils or bark, stem, or leaf tissues. The findings of our study suggest that prescribed burn does not significantly alter the aboveground plant-associated microbial communities of flowering dogwood trees five months following the prescribed burn application. Further studies are required to better understand the short- and long-term effects of prescribed burns on the microbial communities of forest trees.

16S rRNA↗
NASA NTRS2023

Portland Urban Development: Quantifying and Visualizing Urban Heat with Compounding Vulnerabilities to Support Community Depaving Initiatives

Urban heat is a pressing concern in Portland, Oregon as climate change induced heat waves increase. Cities experience higher temperatures due to the urban heat island effect (UHI), and environmental injustice and disenfranchisement in minority communities expose low-income and Black, Indigenous, and People of Color (BIPOC) residents to more extreme and debilitating heat events. Our team identified Portland’s communities on the frontlines of urban heat impacts by overlapping environmental and social vulnerabilities using NASA Earth observations. We partnered with Depave, a Portland-based nonprofit that works alongside communities to replace pavement with greenspace in historically disenfranchised areas. Using Landsat 8 Thermal Infrared Sensor (TIRS) imagery, we mapped Land Surface Temperature (LST) and developed a heat-specific Social Vulnerability Index (SVI) through a Principal Component Analysis (PCA) to identify Portland’s communities with the highest potential heat vulnerability. Then, we calculated the temperature change of depaving in six case studies to quantify Depave's efforts in heat mitigation and environmental justice. Our analysis demonstrated that, throughout Portland, there are frontline communities experiencing high potential social vulnerability to extreme temperatures due to environmental injustices and over-pavement. Finally, Depave’s impact on urban heat is observable and quantifiable using remote-sensing data and tools, with an average of 1ºF LST decrease across the six case studies. We illustrated the significance of local urban heat mitigation efforts and propose next steps for conducting inclusive and intentional research that highlights the lived experiences and resilience of frontline communities.

Environmental justice↗
DOE OSTI2023

Conducting Field Validations of Commercial Energy Efficiency Technologies with Underserved Communities: Preprint

Underserved communities in the United States often experience the negative impacts of climate change and environmental degradation but enjoy few of the benefits of technological and environmental advances. The White House has addressed this inequity through the Justice40 initiative, which requires 40% of the benefits of select federal investments to be directed to underserved communities (The White House, 2022). Clean energy and energy efficiency are two highlighted investment categories, so the U.S. Department of Energy will guide implementation of the Justice40 initiative by, among other things, decreasing energy burdens, increasing parity in clean energy technology access and adoption, and increasing energy resiliency. A strategy for reaching these goals is to evaluate and validate new energy efficiency technologies in commercial buildings in underserved communities, where buildings may be older, smaller, and have deferred maintenance due to historical underinvestment. This paper assesses the proficiency of the technologies under these conditions and increases awareness of the benefits to the communities. In addition, historical redlining and past negative experiences with government and large institutions may make residents wary of participating in these field validations. Researchers, therefore, may need to spend more time building relationships and matching technologies to buildings. In this paper, we analyzed technical reports to identify common required and desired field validation building characteristics, and conducted semi-structured expert conversations to identify key stages and major themes of engaging underserved communities. Our results indicate that the benefits to both the community and energy efficiency research justify the effort. The White House. (2022). Justice40. https://www.whitehouse.gov/environmentaljustice/justice40/

ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATION↗
DOE OSTI2023

Section 48C Tax Credits - designated energy communities

Collection of data and an interactive mapping tool that designates census tracts that are considered energy communities for the purposes of the 48C tax credit. While any location in the U.S. is eligible for 48C, to be considered for the portion of credits dedicated to energy communities, a project must be located in a census tract that satisfies the relevant requirements of an energy community as noted in 48C and has not received funding in a prior round of 48C. Additional information on the 48C tax credit can be accessed on the Interagency Working Group on Coal & Power Plant Communities & Economic Revitalization Energy Communities website (https://energycommunities.gov/).

48C↗
DOE OSTI2018

Harvesting effects on wild bee communities in bioenergy grasslands depend on nesting guild

Conversion of annual crops to native perennial grasslands for bioenergy production may help conserve wild bees by enhancing nest and food resources. However, bee response to the disturbance of biomass harvesting may depend on their nesting location, thus their vulnerability to nest destruction, and the response of the forb community on which they forage. Moreover, because bees have long foraging ranges, effects of local harvesting may depend on the amount of natural habitat in the surrounding landscape. We performed a large-scale one- and two-year experiment in Michigan and Wisconsin, USA, respectively, to examine how grassland harvesting, landscape context, and study year affect the forb community, above- and belowground-nesting bee species richness, community composition, trap nest emergence, and visitation rate. In Wisconsin, harvesting increased forb richness, cover, and evenness compared to unharvested control sites. Harvesting negatively affected aboveground-nesting bee richness and emergence from trap nests, possibly because of nest destruction during the previous harvest. By contrast, harvesting positively affected belowground-nesting bee richness, possibly because of the greater food resource availability and reduced thatch allowing greater access to nesting sites in the soil. Harvesting also affected bee community composition, reflecting the increase in belowground-nesting species at harvested sites. Despite harvesting effects on forb and bee communities, there was no effect on flower visitation rate, indicating little effect on pollination function. We did not find a harvest by landscape context interaction, which, in combination with the negative harvesting effect on trap nest emergence, suggests that harvesting can affect local population growth rather than simply affecting forager aggregation in different resource environments. For bees, there was no harvest by study year interaction, indicating a consistent response over a short timescale. Similarly, in Michigan, belowground-nesting species also responded positively to harvesting, which was more pronounced in sandier soils that are preferred for nesting. However, other components of the Michigan bee and forb communities were not significantly affected by biomass harvesting. Overall, our study demonstrates that harvesting grasslands can positively affect the ~80% of bee species that nest belowground by enhancing nest and/or forage resources, but that conserving aboveground nesters may require leaving some area unharvested.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2025

Habitat specialization and edge effects of soil microbial communities in a fragmented landscape

Abstract Soil microorganisms play outsized roles in nutrient cycling, plant health, and climate regulation. Despite their importance, we have a limited understanding of how soil microbes are affected by habitat fragmentation, including their responses to conditions at fragment edges, or “edge effects.” To understand the responses of soil communities to edge effects, we analyzed the distributions of soil bacteria, archaea, and fungi in an experimentally fragmented system of open patches embedded within a forest matrix. In addition, we identified taxa that consistently differed among patch, edge, or matrix habitats (“specialists”) and taxa that showed no habitat preference (“nonspecialists”). We hypothesized that microbial community turnover would be most pronounced at the edge between habitats. We also hypothesized that specialist fungi would be more likely to be mycorrhizal than nonspecialist fungi because mycorrhizae should be affected more by different plant hosts among habitats, whereas specialist prokaryotes would have smaller genomes (indicating reduced metabolic versatility) and be less likely to be able to sporulate than nonspecialist prokaryotes. Across all replicate sites, the matrix and patch soils harbored distinct microbial communities. However, sites where the contrasts in vegetation and pH between the patch and matrix were most pronounced exhibited larger differences between patch and matrix communities and tended to have edge communities that differed from those in the patch and forest. There were similar numbers of patch and matrix specialists, but very few edge specialist taxa. Acidobacteria and ectomycorrhizae were more likely to be forest specialists, while Chloroflexi, Ascomycota, and Glomeromycota (i.e., arbuscular mycorrhizae) were more likely to be patch specialists. Contrary to our hypotheses, nonspecialist bacteria were not more likely than specialist bacteria to have larger genomes or to be spore‐formers. We found partial support for our mycorrhizal hypothesis: arbuscular mycorrhizae, but not ectomycorrhizae, were more likely to be specialists. Overall, our results indicate that soil microbial communities are sensitive to edges, but not all taxa are equally affected, with arbuscular mycorrhizae in particular showing a strong response to habitat edges. In the context of increasing habitat fragmentation worldwide, our results can help inform efforts to maintain the structure and functioning of the soil microbiome.

Winfrey, Claire C. [Department of Ecology and Evol↗
DOE OSTI2018

Activity-based protein profiling – enabling multimodal functional studies of microbial communities

Microorganisms living in community are critical to life on Earth, playing numerous and profound roles in the environment and human and animal health. Though their essentiality to life is clear, the mechanistic underpinnings of community structure, in-teractions, and functions is largely unexplored and in need of function-dependent technologies to unravel the mysteries. Activity-based protein profiling holds much promise for mechanistic microbial community investigations and will also yield an ave-nue to determine how external exposures result in functional alterations to microbi-omes. Herein, we illuminate the current state and prospective contributions of ABPP as it relates to microbial communities. We provide details on the design, develop-ment, and validation of probes, challenges associated with probing in complex micro-bial communities, provide some specific examples of the biological applications of ABPP in microbes and microbial communities, and highlight potential areas for devel-opment. The future of ABPP holds real promise for understanding and considerable impact in microbiome studies associated with personalized medicine, precision agricul-ture, veterinary health, environmental studies, and beyond.

Whidbey, Christopher-Mychael↗
DOE OSTI2020

Peatland Microbial Community Composition Is Driven by a Natural Climate Gradient

Peatlands are important players in climate change–biosphere feedbacks via long-term net carbon (C) accumulation in soil organic matter and as potential net C sources including the potent greenhouse gas methane (CH 4 ). Interactions of climate, site-hydrology, plant community, and groundwater chemical factors influence peatland development and functioning, including C dioxide (CO 2 ) and CH 4 fluxes, but the role of microbial community composition is not well understood. To assess microbial functional and taxonomic dissimilarities, we used high throughput sequencing of the small subunit ribosomal DNA (SSU rDNA) to determine bacterial and archaeal community composition in soils from twenty North American peatlands. Targeted DNA metabarcoding showed that although Proteobacteria, Acidobacteria, and Actinobacteria were the dominant phyla on average, intermediate and rich fens hosted greater diversity and taxonomic richness, as well as an array of candidate phyla when compared with acidic and nutrient-poor poor fens and bogs. Moreover, pH was revealed to be the strongest predictor of microbial community structure across sites. Predictive metagenome content (PICRUSt) showed increases in specific genes, such as purine/pyrimidine and amino-acid metabolism in mid-latitude peatlands from 38 to 45° N, suggesting a shift toward utilization of microbial biomass over utilization of initial plant biomass in these microbial communities. Overall, there appears to be noticeable differences in community structure between peatland classes, as well as differences in microbial metabolic activity between latitudes. Finally, these findings are in line with a predicted increase in the decomposition and accelerated C turnover, and suggest that peatlands north of 37° latitude may be particularly vulnerable to climate change.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2016

Dispersal Limitations on Fish Community Recovery Following Long-term Water Quality Remediation

Holistic restoration approaches, such as water quality remediation, are likely to meet conservation objectives because they are typically implemented at watershed scales, as opposed to individual stream reaches. However, habitat fragmentation may impose constraints on the ecological effectiveness of holistic restoration strategies by limiting colonization following remediation. We questioned the importance of dispersal limitations to fish community recovery following long-term water quality remediation and species reintroductions across the White Oak Creek (WOC) watershed near Oak Ridge, Tennessee (USA). Long-term (26 years) responses in fish species richness and biomass to water quality remediation were evaluated in light of habitat fragmentation and population isolation from instream barriers, which varied in their passage potential. In addition, ordination techniques were used to determine the relative importance of habitat connectivity and water quality, in explaining variation fish communities relative to environmental fluctuations, i.e. streamflow. Ecological recovery (changes in richness) at each site was negatively related to barrier index, a measure of community isolation by barriers relative to stream distance. Following species reintroductions, dispersal by fish species was consistently in the downstream direction and upstream passage above barriers was non-existent. The importance of barrier index in explaining variation in fish communities was stronger during higher flow conditions, but decreased over time an indication of increasing community stability and loss of seasonal migrants. Compared to habitat fragmentation, existing water quality concerns (i.e., outfalls, point source discharges) were unrelated to ecological recovery, but explained relatively high variation in community dynamics. Our results suggest that habitat fragmentation limited the ecological effectiveness of intensive water quality remediation efforts and fish reintroduction efforts by impeding recolonization at isolated stream reaches.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2019

Bacterial communities protect the alga Microchloropsis salina from grazing by the rotifer Brachionus plicatilis

Open algal ponds are likely to succumb to unpredictable, devastating crashes by one or several deleterious species. Developing methodology to mitigate or prevent pond crashes will increase algal biomass production, drive down costs for algae farmers, and reduce the risk involved with algae cultivation, making it more favorable for investment by entrepreneurs and biotechnology companies. In this work, we postulate that specific algal-bacterial co-cultures grown with the green alga Microchloropsis salina prevented grazing by the marine rotifer, Brachionus plicatilis. We obtained seven algal-bacterial co-cultures from crashed rotifer cultures, maintained them in co-culture with Microchloropsis salina , and used a microalgal survival assay to determine that algae present in each co-culture were protected from rotifer grazing and culture crash. After months of routinely diluting and maintaining these seven algal-bacterial co-cultures, we repeated the assay and found the opposite result: none of the seven bacterial communities protected the microalgae from rotifer grazing. We performed 16S rRNA gene amplicon sequencing on the protective and nonprotective co-culture samples and identified substantial differences in the makeup of the bacterial communities. Protective bacterial communities consisted primarily of Alphaproteobacteria (Rhodobacteraceae) and Gammaproteobacteria ( Marinobacter , Pseudomonas, Methylophaga ) while nonprotective bacterial communities were less diverse and missing many putatively crucial members. We compared the seven protective communities with the seven nonprotective communities and we correlated specific bacterial amplicon sequence variants with algal protection. With these data, our future research will aim to define and develop an engineered-microbiome that can stabilize industrial Microchloropsis salina cultures by protecting against grazer-induced pond crashes.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2019

Context dependent fungal and bacterial soil community shifts in response to recent wildfires in the Southern Appalachian Mountains

Decades of fire suppression coupled with changing climatic conditions have increased the frequency and intensity of wildfires. Here, the Southern Appalachia region of the United States is predicted to be particularly susceptible to climatic changes, with predicted increases in fire severity and occurrence. Following the record breaking fire season in 2016 in Southern Appalachia, we examined wildfire impacts on soil chemistry and below ground communities (fungi and bacteria – Illumina MiSeq) within two substrates (duff and soil) at two adjacent locations with similar plant communities (Great Smoky Mountains National Park – ‘Chimney Top 2’ Fire (GRSM) and Nantahala National Forest – ‘Cliffside’ Fire (NNF)) from replicate plots representing a range of fire severities (unburned, low severity, moderate severity, severe). Differing fire severities changed community composition, and fire severity played a stronger role in structuring bacterial communities than in structuring fungal communities. Further, fire impacts on soil communities and functional guilds responses were location- and substrate-specific with NNF responding more strongly to fire than GRSM. Additionally, using a novel analysis tool (Axis Weighted Ordination Distance – AWOrD), domain and location specific responses to wildfire severity are demonstrated. Taken together, our results suggest context-dependency in microbial responses to fire that must be accounted for to generate ecosystem-wide recovery predictions.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2025

Disruption of the endogenous indole glucosinolate pathway impacts the Arabidopsis thaliana root exudation profile and rhizobacterial community

Root exudates are composed of primary and secondary metabolites known to modulate the rhizosphere microbiota. Glucosinolates are defense compounds present in the Brassicaceae family capable of deterring pathogens, herbivores and biotic stressors in the phyllosphere. In addition, traces of glucosinolates and their hydrolyzed byproducts have been found in the soil, suggesting that these secondary metabolites could play a role in the modulation and establishment of the rhizosphere microbial community associated with this family. Here, we used Arabidopsis thaliana mutant lines, including the cyp79B2cyp79B3 double mutant line with a disruption in the indole glucosinolate pathway and atr1D, which overexpresses ATR1 and increases glucosinolate production. These lines were analyzed using liquid chromatography-tandem mass spectrometry (LC-MS/MS) and 16S rRNA amplicon sequencing to evaluate how genetic modifications to the indole glucosinolate pathway affects the root exudate profile of Arabidopsis thaliana, and, in turn, impacts the rhizosphere microbial community. Metabolic analysis of root exudates from the wild-type Columbia (Col-0), along with the mutant lines, confirmed that alterations to the indole glucosinolate biosynthetic pathway result in shifts in the root exudate profile of the plant. We observed changes in the relative abundance of exuded metabolites. Moreover, 16S rRNA amplicon sequencing results provided evidence that the rhizobacterial communities associated with the plant lines used were directly impacted in diversity and community composition. Here, this work provides further information on the involvement of secondary metabolites and their role in modulating the rhizobacterial community. Root metabolites dictate the presence of different bacterial species, including plant growth-promoting rhizobacteria (PGPR). Our results suggest that genetic alterations in the indole glucosinolate pathway cause disruptions beyond the endogenous levels of the plant, significantly changing the abundance and presence of different metabolites in the root exudates of the plants as well as the microbial rhizosphere community.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2018

Variation in microbial community structure correlates with heavy-metal contamination in soils decades after mining ceased

Microorganisms play vital roles in Earth's biogeochemical cycles. Identifying disturbances in microbial communities due to anthropogenic contamination can provide insights into the health of ecosystems. Picher, Oklahoma, was the site of large-scale mining operations for Pb, Zn, and other heavy metals until the mid-1950s, operating within the Tri-State Mining District (TSMD) of Missouri, Kansas and Oklahoma. Although mining ceased decades ago, high concentrations of heavy metals (>1000 ppm) remain in area soil and water systems. Previously, we mapped metal concentrations on samples collected from mine tailings in Picher and along cardinal-direction transects within an 8.05-km radius of the town. To elucidate changes in microbial community structure due to regional metal contamination, 16S rRNA gene sequences and qPCR calculations of total Bacteria and Archaea were analyzed against these metal concentrations. Bacteria were negatively and significantly correlated with Pb, Cd, Zn, and Mg; however, Archaea was only significantly and positively correlated with pH. Illumina sequencing of 16S rRNA genes showed significant differences in microbial communities of chat and west transect samples. Comparison of soil chemistry with community structure indicated that Al, Pb, Cd, and Zn significantly impacted community composition and distribution of individual OTUs. Mapping the distribution of heavy-metal contamination and microbial communities in these soils represents the first step in understanding effects of long-term, heavy-metal contamination at a basic trophic level.

59 BASIC BIOLOGICAL SCIENCES↗