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At least 505 records · Page 28

Contributing to Sunny open source code

The Sunny package is an existing open source software to support the simulation of magnetic spin systems. It is available online under the MIT license here: https://github.com/SunnySuite/Sunny.jl The package aims to include the following features: - Analysis for symmetry-allowed interactions - Monte Carlo algorithms for simulating equilibrium configurations. - Schemes for integrating spin dynamics. - Inference of model Hamiltonians - Support for generalized SU(N) spins - Tools for interpreting experimental data, such as diffraction data, magnetization curves, and heat capacity data

Barros, Kipton↗

Generic Multi-Layer Perceptron Inference Accelerator on FPGA (vneuron) v1.0

We have designed and implemented a neural network inference compute engine (vneuron) that can be deployed in the fabric of any FPGA without using special hardware accelerator primitive. The "vneuron" is purely written in verilog, and supports scalable neural network structure with fully connected layers and ReLU activation ( Multi-Layer Perceptron architecture) with 16 bits of precision. We have demonstrated it on an Xilinx Artix 7 FPGA for a 16-input, 8-output MLP with 3 layer, 1600 parameters. It takes 40 DSP48E and 40 BRAM18, and takes 131 clock cycles for computing (1048 ns when clocked at 125MHz). We include PyTorch quantization from a given floating point model, and provide behavioral verification simulation in the disclosed software package.

Du, Qiang↗

2-D Surface Temperature Simulation Data and Matlab Scripts

SAND2023-07249O The 2-D Surface Temperature Simulation Data and Matlab software can estimate 2D temperature fields from electrical measurements along the edge of the 2D domain. Sandia National Laboratories is a multimission laboratory managed and operated by National Technology & Engineering Solutions of Sandia, LLC, a wholly owned subsidiary of Honeywell International Inc., for the U.S. Department of Energy’s National Nuclear Security Administration under contract DE-NA0003525.

Sjoberg, Carl Magnus↗

Enabling AI in synthetic biology through Construction File specification

The Construction File (CF) specification establishes a standardized interface for molecular biology operations, laying a foundation for automation and enhanced efficiency in experiment design. It is implemented across three distinct software projects: PyDNA_CF_Simulator, a Python project featuring a ChatGPT plugin for interactive parsing and simulating experiments; ConstructionFileSimulator, a field-tested Java project that showcases 'Experiment' objects expressed as flat files; and C6-Tools, a JavaScript project integrated with Google Sheets via Apps Script, providing a user-friendly interface for authoring and simulation of CF. The CF specification not only standardizes and modularizes molecular biology operations but also promotes collaboration, automation, and reuse, significantly reducing potential errors. The potential integration of CF with artificial intelligence, particularly GPT-4, suggests innovative automation strategies for synthetic biology. While challenges such as token limits, data storage, and biosecurity remain, proposed solutions promise a way forward in harnessing AI for experiment design. This shift from human-driven design to AI-assisted workflows, steered by high-level objectives, charts a potential future path in synthetic biology, envisioning an environment where complexities are managed more effectively.

59 BASIC BIOLOGICAL SCIENCES↗

HERO WEC V1.0 - WEC-Sim Model (July 2024)

**This submission supersedes submission MHKDR-483** This submission file contains the files that are needed to simulate NREL's HERO WEC (hydraulic and electric reverse osmosis wave energy converter). This requires the user to have already installed WEC-Sim. In addition to the standard toolboxes that are required to run WEC-Sim the user will also need the Simscape Fluids and Simscape Driveline packages. The zip file (HERO_V1_WECSim_2024.zip) contains the following: - HERO_HPTO_2024.slx: Simulink-based WEC Sim model of the first gen (V1.0) Hydraulic PTO (power take-off) that was designed for the HERO WEC. This model has been updated since submission #483 based on in-laboratory experimental results. - wecSimInputFile.m: Input file needed to run the model - userDefinedFunctionsMCR.m: MCR (multi condition run) script that is needed if a use wants to simulate multiple wave conditions. - geometry (folder): Includes the geometry file that is needed for visualization - hydroData (folder): Includes the required WAMIT data to run WEC-Sim -HydVisualization.mlx: Visualization script to plot simulation results (not needed to run)

16 TIDAL AND WAVE POWER↗

Variational Quantum Chemistry Programs in JaqalPaq

We present example quantum chemistry programs written with JaqalPaq, a python meta-programming language used to code in Jaqal (Just Another Quantum Assembly Language). These JaqalPaq algorithms are intended to be run on the Quantum Scientific Computing Open User Testbed (QSCOUT) platform at Sandia National Laboratories. Our exemplars use the variational quantum eigensolver (VQE) quantum algorithm to compute the ground state energies of the H2, HeH+, and LiH molecules. Since the exemplars focus on how to program in JaqalPaq, the calculations of the second-quantized Hamiltonians are performed with the PySCF python package, and the mappings of the fermions to qubits are obtained from the OpenFermion python package. Using the emulator functionality of JaqalPaq, we emulate how these exemplars would be executed on an error-free QSCOUT platform and compare the emulated computation of the bond-dissociation curves for these molecules with their exact forms within the relevant basis.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Improving the Power Outage Resilience of Buildings with Solar PV through the Use of Battery Systems and EV Energy Storage

Buildings with solar photovoltaic (PV) generation and a stationary battery energy storage system (BESS) may self-sustain an uninterrupted full-level electricity supply during power outages. The duration of off-grid operation is dependent on the time of the power fault and the capabilities of the home energy management system (HEMS). In this paper, building resilience is quantified by analyzing the self-sustainment duration for all possible power outages throughout an entire year. An evaluation method is proposed and exercised on a reference house in California climate zone 9 for which the detailed electricity usage is simulated using the EnergyPlus software. The influence of factors such as energy use behavioral patterns, energy storage capacity from the BESS, and an electric vehicle (EV) battery on the building resilience is evaluated. Varying combinations of energy storage and controllable loads are studied for optimally improved resilience based on user preferences. It is shown that for the target home and region with a solar PV system of 7.2 kW, a BESS with a capacity of 11 kWh, and an EV with a battery of 80 kWh permanently connected to the home, off-grid self-sustained full operation is guaranteed for at least 72 h.

14 SOLAR ENERGY↗

Framework for Assessing Impact of Wave-Powered Desalination on Resilience of Coastal Communities

Coastal communities face unique challenges in maintaining continuous service from critical infrastructure. This research advances capabilities for evaluating the impact of using wave energy to desalinate water on the resilience of coastal communities. The study focuses on the feasibility of using wave energy conversion to provide drinking water to communities in need and applying resilience metrics to quantify its impact on the community. To assess the feasibility of wave-powered desalination, this research couples the open-source software Wave Energy Converter SIMulator (WEC-Sim) and Water Network Tool for Resilience (WNTR). This research explores variations in both the wave resource (location, seasonality, and duration) and the ability to maintain drinking water service during a disruption scenario by applying the simulation framework to three case studies, which are based on communities in Puerto Rico. The simulation framework provides a contextualized assessment of the ability of wave-powered desalination to improve the resilience of coastal communities, which can serve as a methodology for future studies seeking the integration of wave-powered desalination with water distribution systems.

16 TIDAL AND WAVE POWER↗

Primordial Black Hole Dark Matter Simulations Using PopSyCLE

Abstract Primordial black holes (PBHs), theorized to have originated in the early Universe, are speculated to be a viable form of dark matter. If they exist, they should be detectable through photometric and astrometric signals resulting from gravitational microlensing of stars in the Milky Way. Population Synthesis for Compact-object Lensing Events, or PopSyCLE , is a simulation code that enables users to simulate microlensing surveys, and is the first of its kind to include both photometric and astrometric microlensing effects, which are important for potential PBH detection and characterization. To estimate the number of observable PBH microlensing events, we modify PopSyCLE to include a dark matter halo consisting of PBHs. We detail our PBH population model, and demonstrate our PopSyCLE + PBH results through simulations of the Optical Gravitational Lensing Experiment-IV (OGLE-IV) and Nancy Grace Roman Space Telescope (Roman) microlensing surveys. We provide a proof-of-concept analysis for adding PBHs into PopSyCLE , and thus include many simplifying assumptions, such as f DM , the fraction of dark matter composed of PBHs, and m ¯ PBH , mean PBH mass. Assuming m ¯ PBH = 30 M ⊙ , we find ∼3.6 f DM times as many PBH microlensing events than stellar evolved black hole events, a PBH average peak Einstein crossing time of ∼91.5 days, estimate on order of 10 2 f DM PBH events within the 8 yr OGLE-IV results, and estimate Roman to detect ∼1000 f DM PBH microlensing events throughout its planned microlensing survey.

79 ASTRONOMY AND ASTROPHYSICS↗

New Developments and Verification of the Fusion Blanket Simulation Capabilities in the MOOSE Framework

This poster contains new developments and updates in the Multiphysics Object-Oriented Simulation Environment (MOOSE) framework related to fusion modeling and simulation, and forms the basis for an on-going effort in modeling whole fusion devices at Idaho National Laboratory using MOOSE. In this work, a slice of the midplane of a proposed ceramic breeder blanket design for the Fusion Nuclear Science Facility is simulated using a combination of neutronics, 1D system level thermal hydraulics for helium, 3D heat conduction, and tritium transport. Previous work focused on the engineering scale full assembly of a blanket sector, but the simulations here form the basis for software quality and verification efforts to increase confidence as the large scale simulations continue. This poster was presented at the Idaho National Laboratory Intern Poster Session 2023.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

hydro-hifem v.1.0

SAND2021-3180 O The hydro-hifem 1.0 software is used to simulate transient physical processes in large geologic environments consisting of complex fractures and man-made infrastructures with affordable computational cost and mesh refinement. The Earth models with such complex model features can be designed by considering the reduction of insignificant dimensions of fractures/infrastructures and embracing their corresponding hierarchical material properties, and their computational meshes are generated by using Cubit. The finite element solutions are automatically distributed across nodes of parallel cluster for efficient computation of transient fluid flow or heat conduction in geologic media. Sandia National Laboratories is a multimission laboratory managed and operated by National Technology & Engineering Solutions of Sandia, LLC, a wholly owned subsidiary of Honeywell International Inc., for the U.S. Department of Energy’s National Nuclear Security Administration under contract DE-NA0003525.

Beskardes, GungorDidem↗

hifem_transport

SAND2022-14657 O The hifem-transport software is used to simulate transport processes in large geologic environments characterized by complex fractures and man-made infrastructure at an affordable computational cost. Sandia National Laboratories is a multimission laboratory managed and operated by National Technology & Engineering Solutions of Sandia, LLC, a wholly owned subsidiary of Honeywell International Inc., for the U.S. Department of Energy’s National Nuclear Security Administration under contract DE-NA0003525.

Beskardes, Gungor↗

Multi-Core Microcontroller Hardware In the Loop System for Electric Machine Control

Hardware in the Loop (HIL) is a simulation technique used to reduce the software development cycle and test control systems in a non-destructive environment. This work describes a cost effective HIL simulator on a dual core microcontroller in which one core acts as a controller and the other emulates the system under control. The emulator runs one step per Pulse Width Modulation (PWM) period in real time. To handle the computational burden and prioritize execution of simulation and control tasks, an interrupt-based software architecture with task prioritization has been developed. As a demonstration, the HIL has been implemented on a Texas Instruments TMS320F28379D dual core microcontroller, which emulates a Permanent Magnet Synchronous Machine (PMSM) with resolver feedback. Hardware peripherals are developed and tested concurrently with the control system, providing higher confidence in the software. By using the peripherals in the HIL development, the controller exercises either the HIL emulation or a pin compatible PMSM testbench. To quantify performance and validate the processor based emulator, the HIL results are compared to the preexisting testbench for accuracy benchmarking at no-load and under load for a range of operating points.

33 ADVANCED PROPULSION SYSTEMS↗

Mesoscopic Modeling and Rapid Simulation of Incremental Changes in Epidemic Scenarios on GPUs

In simulation-based studies and analyses of epidemics, a major challenge lies in resolving the conflict between fidelity of models and the speed of their simulation. Another related challenge arises in dealing with the large number of what–if scenarios that need to be explored. Here, we describe new computational methods that together provide an approach to dealing with both challenges. A mesoscopic modeling approach is described that strikes a middle ground between macroscopic models based on coupled differential equations and microscopic models built on fine-grained behaviors at the individual entity level. The mesoscopic approach offers the ability to incorporate complex compositions of multiple layers of dynamics even while retaining the potential for aggregate behaviors at varying levels. It also is an excellent match to the accelerator-based architectures of modern computing platforms in which graphical processing units (GPUs) can be exploited for fast simulation via the parallel execution mode of single instruction multiple thread (SIMT). The challenge of simulating a large number of scenarios is addressed via a method of sharing model state and computation across a tree of what–if scenarios that are localized, incremental changes to a large base simulation. A combination of the mesoscopic modeling approach and the incremental what–if scenario tree evaluation has been implemented in the software on modern GPUs. Synthetic simulation scenarios are presented to demonstrate the computational characteristics of our approach. Results from the experiments with large population data, including USA, UK, and India, illustrate the modeling methodology and computational performance on thousands of synthetically generated what–if scenarios. Execution of our implementation scaled to 8192 GPUs of supercomputing platforms demonstrates the ability to rapidly evaluate what–if scenarios several orders of magnitude faster than the conventional methods.

97 MATHEMATICS AND COMPUTING↗

Developing an Automated Uncertainty Quantification Tool to Improve Watershed-Scale Predictions of Water and Nutrient Cycling

Managing the flow of water, nutrients, and contaminants in watersheds is vital to addressing pressing issues related to water scarcity, access to clean drinking water, energy production, resilience to natural and anthropogenic perturbations, and ecological restoration. Decisions about the management of watersheds critically depend on the accuracy with which the flow of water and chemicals through the watershed can be predicted by computer models. Prediction uncertainty can be reduced by matching the model to data, which are collected in the field at great expense. The contribution of watershed characterization data to reducing uncertainty of relevant model predictions can be evaluated in a so-called data-worth analysis, which provides transparent, quantitative metrics about a data set’s value for the support of relevant watershed management objectives. To achieve this goal, we developed a software package that implements the data-worth analysis approach for use with state-of-the-art watershed models. The purpose of the proposed data-worth analysis is to help decision-makers allocate resources for watershed characterization such that the uncertainty in model predictions can be significantly reduced, which leads to better, more effective management decisions. At the same time, watershed characterization costs can be reduced. The specific technical objectives of this SBIR/STTR Phase II project were to develop a framework and associated software toolsets that implement the uncertainty quantification and data-worth analysis approach for use with state-of-the-art watershed models. This goal was achieved by (A) developing a user-friendly, robust software package that is accessible to a wide audience, including watershed managers, policy-makers, and public stakeholders; (B) by demonstrating application of the prototype on several use cases that are representative of complex watershed management challenges spanning a range of scales and that consider different open-source, DOE-based codes and other modeling platforms; and (C) by gathering information about the needs and requirements from potential users to help guide future developments, ensuring that the final product will be commercially viable. The developed software consists of a graphical user interface that guides the user through a sequence of analysis steps, supported by toolsets that leverage state-of-the-art computational simulation-optimization capabilities. A prototype of the software runs on multiple platforms (PC, Mac, multi-processor Linux environment), is linked to diverse watershed simulators (e.g., ECOSYS, TOUGH2, TOUGHREACT, Amanzi-ATS), performs multiple analysis tasks (predictive simulations, sensitivity analysis, uncertainty analysis, automatic parameter estimation, and data-worth analysis, multicomponent geothermometry), and is readily extensible to include external simulators and analysis tools. The software is being commercialized and will be continually updated to address user needs.

58 GEOSCIENCES↗

Control And Optimization Modular Modeling Application For Nuclear Deployment

The purpose of the COMMAND code is to provide a flexible, scalable tool for use in developing, integrating, and testing the technologies necessary for achieving autonomous operations of advanced nuclear reactors. The code enables users to efficiently implement custom simulations and experiments by combining key methods from different software modules. These modules are focused on: modeling and simulation tools, such as nuclear simulation tools used for high-fidelity modeling (e.g., Reactor Excursion and Leak Analysis Program [RELAP5-3D] and Monte Carlo N-Particle [MCNP]); machine learning and optimization tools (e.g., anomaly detection and data-driven modeling techniques); advanced control in its digital, high-performance, and supervisory control forms (e.g., proportional integral derivative (PID) control and model predictive control (MPC); and integration with hardware through industrial communication protocols. To ensure flexibility and scalability, COMMAND was designed to be both modular—the software “pieces” all inherit from generic building blocks and can be combined and connected to create complicated simulations—and high performing—designed for parallel processing, enabling simulations and experiments to take advantage of multi-core computers, servers, and nodes. The code is written in the Python programming language due to the language's popularity, active community, and open-source and cross-platform nature. Maintaining consistency with other simulation tools used within the nuclear energy community, users implement simulations and experiments through text input files, which define components, parameters, connections, etc., through lines of text. Given that COMMAND is written in Python, these input files are native Python scripts, and so use the standard Python structure and formatting. This also enables users to take advantage of Python's extensive package library to develop custom capabilities for their specific use cases.

Faber, Jacob [Idaho National Laboratory (INL), Ida↗

Hermes-3: Multi-component plasma simulations with BOUT++

A new open source tool for fluid simulation of multi-component plasmas is presented, based on a flexible software design that is applicable to scientific simulations in a wide range of fields. Hermes-3 is built on plasma simulation framework BOUT++, consolidating earlier SD1D and Hermes models into a single code that can be configured at run-time to solve plasma models in 1D, 2D or 3D, either for transport (steady-state) or turbulent (time-evolving) problems, with an arbitrary number of ion and neutral species. Here, we describe the improved numerical algorithms and software design that have been implemented in Hermes-3. To demonstrate the capabilities of this tool, applications relevant to the boundary of tokamak plasmas are presented: 1D simulations of diveror plasmas evolving equations for all charge states of neon and deuterium; 2D transport simulations of tokamak equilibria in single-null X-point geometry with plasma ion and neutral atom species; and simulations of the time-dependent propagation of plasma filaments (blobs). Hermes-3 is publicly available on Github under the GPL-3 open source license. The repository includes documentation and a suite of unit, integrated and convergence tests.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗