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DOE OSTI2023

Toward implementing autonomous adaptive data acquisition for scanning hyperspectral imaging of biological systems

Autonomous experimentation is an emerging area of research, primarily related to autonomous vehicles, scientific combinatorial discovery approaches in materials science and drug discovery, and iterative research loops of planning, experimentation, and analysis. However, autonomous approaches developed in these contexts are difficult to apply to high-dimensional mapping technologies, such as scanning hyperspectral imaging of biological systems, due to sample complexity and heterogeneity. We briefly cover the history of adaptive sampling algorithms and surrogate modeling in order to define autonomous adaptive data acquisition as an objective-based, flexible building block for future biological imaging experimentation driven by intelligent infrastructure. We subsequently summarize the recent implementations of autonomous adaptive data acquisition (AADA) for scanning hyperspectral imaging, assess how these address the difficulties of autonomous approaches in hyperspectral imaging, and highlight the AADA design variation from a goal-oriented perspective. Finally, we present a modular AADA architecture that embeds AADA-driven flexible building blocks to address the challenge of time resolution for high-dimensional scanning hyperspectral imaging of nonequilibrium dynamical systems. In our example research-driven experimental design case, we propose an AADA infrastructure for time-resolved, noninvasive, and label-free scanning hyperspectral imaging of living biological systems. This AADA infrastructure can accurately target the correct state of the system for experimental workflows that utilize subsequent expensive, high-information-content analytical techniques.

59 BASIC BIOLOGICAL SCIENCES↗

NASA NTRS2012

On Shaft Data Acquisition System (OSDAS)

On Shaft Data Acquisition System (OSDAS) is a rugged, compact, multiple-channel data acquisition computer system that is designed to record data from instrumentation while operating under extreme rotational centrifugal or gravitational acceleration forces. This system, which was developed for the Heritage Fuel Air Turbine Test (HFATT) program, addresses the problem of recording multiple channels of high-sample-rate data on most any rotating test article by mounting the entire acquisition computer onboard with the turbine test article. With the limited availability of slip ring wires for power and communication, OSDAS utilizes its own resources to provide independent power and amplification for each instrument. Since OSDAS utilizes standard PC technology as well as shared code interfaces with the next-generation, real-time health monitoring system (SPARTAA Scalable Parallel Architecture for Real Time Analysis and Acquisition), this system could be expanded beyond its current capabilities, such as providing advanced health monitoring capabilities for the test article. High-conductor-count slip rings are expensive to purchase and maintain, yet only provide a limited number of conductors for routing instrumentation off the article and to a stationary data acquisition system. In addition to being limited to a small number of instruments, slip rings are prone to wear quickly, and introduce noise and other undesirable characteristics to the signal data. This led to the development of a system capable of recording high-density instrumentation, at high sample rates, on the test article itself, all while under extreme rotational stress. OSDAS is a fully functional PC-based system with 48 channels of 24-bit, high-sample-rate input channels, phase synchronized, with an onboard storage capacity of over 1/2-terabyte of solid-state storage. This recording system takes a novel approach to the problem of recording multiple channels of instrumentation, integrated with the test article itself, packaged in a compact/rugged form factor, consuming limited power, all while rotating at high turbine speeds.

Pedings, Marc↗

DOE OSTI2023

Accelerated deep self-supervised ptycho-laminography for three-dimensional nanoscale imaging of integrated circuits

Three-dimensional inspection of nanostructures such as integrated circuits is important for security and reliability assurance. Two scanning operations are required: ptychographic to recover the complex transmissivity of the specimen, and rotation of the specimen to acquire multiple projections covering the 3D spatial frequency domain. Two types of rotational scanning are possible: tomographic and laminographic. For flat, extended samples, for which the full 180° coverage is not possible, the latter is preferable because it provides better coverage of the 3D spatial frequency domain compared to limited-angle tomography. It is also because the amount of attenuation through the sample is approximately the same for all projections. However, both techniques are time consuming because of extensive acquisition and computation time. Here, we demonstrate the acceleration of ptycho-laminographic reconstruction of integrated circuits with 16 times fewer angular samples and 4.67 times faster computation by using a physics-regularized deep self-supervised learning architecture. We check the fidelity of our reconstruction against a densely sampled reconstruction that uses full scanning and no learning. As already reported elsewhere [ Opt. Express 28 , 12872 ( 2020 ) OPEXFF 1094-4087 10.1364/OE.379200 ], we observe improvement of reconstruction quality even over the densely sampled reconstruction, due to the ability of the self-supervised learning kernel to fill the missing cone.

47 OTHER INSTRUMENTATION↗

DOE OSTI2022

SRF Cavity Instability Detection with Machine Learning at CEBAF

During the operation of CEBAF, one or more unstable superconducting radio-frequency (SRF) cavities often cause beam loss trips while the unstable cavities themselves do not necessarily trip off. Identifying an unstable cavity out of the hundreds of cavities installed at CEBAF is difficult and time-consuming. The present RF controls for the legacy cavities report at only 1 Hz, which is too slow to detect fast transient instabilities. A fast data acquisition system for the legacy SRF cavities is being developed which samples and reports at 5 kHz to allow for detection of transients. A prototype chassis has been installed and tested in CEBAF. An autoencoder based machine learning model is being developed to identify anomalous SRF cavity behavior. The model is presently being trained on the slow (1 Hz) data that is currently available, and a separate model will be developed and trained using the fast (5 kHz) DAQ data once it becomes available. This paper will discuss the present status of the new fast data acquisition system and results of testing the prototype chassis. This paper will also detail the initial performance metrics of the autoencoder model.

Carpenter, A.↗

DOE OSTI2022

SRF Cavity Instability Detection with Machine Learning at CEBAF

Carpenter, A.↗

NASA NTRS2013

Advanced Curation of Current and Future Extraterrestrial Samples

Curation of extraterrestrial samples is the critical interface between sample return missions and the international research community. Curation includes documentation, preservation, preparation, and distribution of samples. The current collections of extraterrestrial samples include: Lunar rocks / soils collected by the Apollo astronauts Meteorites, including samples of asteroids, the Moon, and Mars "Cosmic dust" (asteroid and comet particles) collected by high-altitude aircraft Solar wind atoms collected by the Genesis spacecraft Comet particles collected by the Stardust spacecraft Interstellar dust collected by the Stardust spacecraft Asteroid particles collected by the Hayabusa spacecraft These samples were formed in environments strikingly different from that on Earth. Terrestrial contamination can destroy much of the scientific significance of many extraterrestrial materials. In order to preserve the research value of these precious samples, contamination must be minimized, understood, and documented. In addition the samples must be preserved - as far as possible - from physical and chemical alteration. In 2011 NASA selected the OSIRIS-REx mission, designed to return samples from the primitive asteroid 1999 RQ36 (Bennu). JAXA will sample C-class asteroid 1999 JU3 with the Hayabusa-2 mission. ESA is considering the near-Earth asteroid sample return mission Marco Polo-R. The Decadal Survey listed the first lander in a Mars sample return campaign as its highest priority flagship-class mission, with sample return from the South Pole-Aitken basin and the surface of a comet among additional top priorities. The latest NASA budget proposal includes a mission to capture a 5-10 m asteroid and return it to the vicinity of the Moon as a target for future sampling. Samples, tools, containers, and contamination witness materials from any of these missions carry unique requirements for acquisition and curation. Some of these requirements represent significant advances over methods currently used. New analytical and screening techniques will increase the value of current sample collections. Improved web-based tools will make information on all samples more accessible to researchers and the public. Advanced curation of current and future extraterrestrial samples includes: Contamination Control - inorganic / organic Temperature of preservation - subfreezing / cryogenic Non-destructive preliminary examination - X-ray tomography / XRF mapping / Raman mapping Microscopic samples - handling / sectioning / transport Special samples - unopened lunar cores Informatics - online catalogs / community-based characterization.

Allen, Carlton C.↗

DOE OSTI2020

An organogel library for solution NMR analysis of nanoparticle suspensions in non-aqueous samples

Surface contrast solution NMR methods (scNMR) are emerging as powerful tools to investigate the adsorption of small molecule ligands to the surface of nanoparticles (NP), returning fundamental insight into the kinetics and thermodynamics of sorption, as well as structural information on the adsorbed species. A prerequisite for the acquisition of high quality solution NMR data is the preparation of homogeneous and stable samples that return consistent NMR spectra and allow extensive signal averaging. Unfortunately, this condition does not apply to NMR samples containing NPs that often show a tendency to sediment and accumulate at the bottom of the NMR tube over the course of the experiment. We have recently shown that preparing NMR samples in an agarose gel matrix inhibits sedimentation and allows the characterization of small molecule-NP interactions by scNMR. Unfortunately, as the agarose gel only forms in aqueous solution, this sample preparation method cannot be used to stabilize NP suspensions in a non-aqueous environment. In this work, we introduce a library of 48 organogels, based on low molecular-mass organic gelators (LMOGs), to prepare NMR samples of small molecule/NP systems in a wide range of organic solvents. In addition, we present a simple method that takes advantage of 1H transverse relaxation (1H-R2) measurements to screen the library and identify the best gelator to characterize the small molecule-NP interaction of interest in the solvent of choice. We expect the results of this study will enable the preparation of homogeneous and stable samples of NPs in non-aqueous environments, therefore dramatically increasing the applicability of scNMR to the characterization of heterogeneous interactions and to the investigation of the role played by solvent molecules in regulating the kinetics and thermodynamics of sorption.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

DOE OSTI2023

National Opacity Program - Tri-Lab Assessment of Measurements and Models (Milestone 7720)

Opacity-on-NIF has obtained opacity data under conditions similar to those achieved by the entirely different Opacity-on-Z platform. From low- and high-Z elements at different anchor points, rigorously compare the opacity data between the laboratories and to multiple opacity theory models. Compare and assess the data acquisition and processing methods for obtaining opacities and for measuring/inferring sample conditions. Explain, or develop hypotheses for, any discrepancies. Map progress to the National Opacity Strategy and define future directions.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

DOE OSTI2023

Milestone 7720: National Opacity Program - Tri-Lab Assessment of Measurements and Models

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

NASA NTRS1975

An automated atmospheric sampling system operating on 747 airliners

An air sampling system that automatically measures the temporal and spatial distribution of selected particulate and gaseous constituents of the atmosphere has been installed on a number of commercial airliners and is collecting data on commercial air routes covering the world. Measurements of constituents related to aircraft engine emissions and other pollutants are made in the upper troposphere and lower stratosphere (6 to 12 km) in support of the Global Air Sampling Program (GASP). Aircraft operated by different airlines sample air at latitudes from the Arctic to Australia. This system includes specialized instrumentation for measuring carbon monoxide, ozone, water vapor, and particulates, a special air inlet probe for sampling outside air, a computerized automatic control, and a data acquisition system. Air constituents and related flight data are tape recorded in flight for later computer processing on the ground.

Perkins, P.↗

NASA NTRS1976

An automated atmospheric sampling system operating on 747 airliners

An air sampling system that automatically measures the temporal and spatial distribution of particulate and gaseous constituents of the atmosphere is collecting data on commercial air routes covering the world. Measurements are made in the upper troposphere and lower stratosphere (6 to 12 km) of constituents related to aircraft engine emissions and other pollutants. Aircraft operated by different airlines sample air at latitudes from the Arctic to Australia. This unique system includes specialized instrumentation, a special air inlet probe for sampling outside air, a computerized automatic control, and a data acquisition system. Air constituent and related flight data are tape recorded in flight for later computer processing on the ground.

Perkins, P. J.↗

NASA NTRS1981

Users manual for the US baseline corn and soybean segment classification procedure

A user's manual for the classification component of the FY-81 U.S. Corn and Soybean Pilot Experiment in the Foreign Commodity Production Forecasting Project of AgRISTARS is presented. This experiment is one of several major experiments in AgRISTARS designed to measure and advance the remote sensing technologies for cropland inventory. The classification procedure discussed is designed to produce segment proportion estimates for corn and soybeans in the U.S. Corn Belt (Iowa, Indiana, and Illinois) using LANDSAT data. The estimates are produced by an integrated Analyst/Machine procedure. The Analyst selects acquisitions, participates in stratification, and assigns crop labels to selected samples. In concert with the Analyst, the machine digitally preprocesses LANDSAT data to remove external effects, stratifies the data into field like units and into spectrally similar groups, statistically samples the data for Analyst labeling, and combines the labeled samples into a final estimate.

Horvath, R.↗

NASA NTRS1982

Rangeland biomass estimation demonstration

Because of their sensitivity to chlorophyll density, green leaf density, and leaf water density, two hand-held radiometers which have sensor bands coinciding with thematic mapper bands 3, 4, and 5 were used to calibrate green biomass to LANDSAT spectral ratios as a step towards using portable radiometers to speed up ground data acquisition. Two field reflectance panels monitored incoming radiation concurrently with sampling. Software routines were developed and used to extract data from uncorrected tapes of MSS data provided in NASA LANDSAT universal format. A LANDSAT biomass calibration curve estimated the range biomass over a four scene area and displayed this information spatially as a product in a format of use to ranchers. The regional biomass contour map is discussed.

Newton, R. W.↗

NASA NTRS1989

Fluctuating pressures measured beneath a high-temperature, turbulent boundary layer on a flat plate at Mach number of 5

Fluctuating pressures were measured beneath a Mach 5, turbulent boundary layer on a flat plate with an array of piezoresistive sensors. The data were obtained with a digital signal acquisition system during a test run of 4 seconds. Data sampling rate was such that frequency analysis up to 62.5 kHz could be performed. To assess in situ frequency response of the sensors, a specially designed waveguide calibration system was employed to measure transfer functions of all sensors and related instrumentation. Pressure time histories were approximated well by a Gaussian prohibiting distribution. Pressure spectra were very repeatable over the array span of 76 mm. Total rms pressures ranged from 0.0017 to 0.0046 of the freestream dynamic pressure. Streamwise, space-time correlations exhibited expected decaying behavior of a turbulence generated pressure field. Average convection speed was 0.87 of freestream velocity. The trendless behavior with sensor separation indicated possible systematic errors.

Parrott, Tony L.↗

NASA NTRS1999

Photon-Weighted Midpoint Exposure Meter for Keck/HIRES Extrasolar Planet Research

NASA Grant was received for research involving the construction of a photon-weighting midpoint exposure meter for the Keck HIRES spectrometer, and for support of our NASA/Keck-based planet research with this instrumentation. The research funds were also to be used to make our iodine cell calibration system and exposure meter available to the NASA Keck observing community. Progress this past year, the second of the 3-year granting period, involved work in 4 areas: 1) Further construction of the midpoint exposure meter. 2) Assisting observers with use of the Iodine system. 3) Acquisition of precision radial velocity data on our program star sample with continued monitoring to proceed in subsequent years as available telescope time permits. 4) Reduction and analysis of incoming precision radial velocity data to reject problematic and uninteresting program stars, and to identify promising planet candidates.

Source record↗

NASA NTRSDate not supplied

Recovery Rate is an Improved Metric for Monitoring Bioburden in Cleanrooms

The Astromaterials Acquisition and Curation Office maintains seven cleanrooms for curating extraterrestrial samples from a variety of sample return missions. These cleanrooms are monitored for inorganic and particulate contamination and are maintained at ISO 7 to ISO 4 equivalent standards as dictated by collection requirements. As part of the advanced curation effort and to prepare for future sample collections from carbonaceous asteroids and eventually Mars we have begun monitoring the microbiology of these cleanrooms. Insights gained from monitoring these labs can be applied to improving planetary protection efforts.

Planetary Protection↗

NASA NTRSDate not supplied

Limitations to Biomass Estimation for FAV Using NDVI Analysis of Satellite Acquisitions

The distribution and standing biomass (mass per unit area) of Floating Aquatic Vegetation (FAV)provide assessment metrics for productivity of vegetative communities. Remote sensing acquisition data has been used to estimate standing biomass in various ecosystems using vegetation indices, particularly the normalized difference vegetation index (NDVI), comparing the relative strength of radiation absorbance and reflectance of vegetation in specific wavebands. Obstacles to estimating vegetation biomass using NDVI reported are related to diversity of the vegetation community and high-density saturation. We evaluate the potential for using NDVI derived estimates for FAV biomass in the California Delta by focusing on patches of predominantly single species and compare biomass estimates for specific patches with measurement of total biomass and partitioning within the vegetation canopy. Using Landsat satellite acquisitions, biomass estimates are made for individual pixels and vegetation samples were collected from those same pixels. Focus on patches of predominantly single FAV species resulted in successful estimation of standing biomass beyond that previously reported in other ecosystems. A saturation response for the estimations was observed, however, with a much higher threshold high than previously reported for diverse population aquatic ecosystems. We discuss the likely cause for the saturation phenomenon and potential improvement utilizing altered spectral indices possible with higher spectral resolution from satellites carrying higher waveband multispectral and hyperspectral instruments.

Biomass↗

NASA NTRS1993

A functional description of the Buffered Telemetry Demodulator (BTD)

This article gives a functional description of the buffered telemetry demodulator (BTD), which operates on recorded digital samples to extract the symbols from the received signal. The key advantages of the BTD are as follows: (1) its ability to reprocess the signal to reduce acquisition time; (2) its ability to use future information about the signal and to perform smoothing on past samples; and (3) its minimum transmission bandwidth requirement as each sub carrier harmonic is processed individually. The first application of the BTD would be the Galileo S-band contingency mission, where the signal is so weak that reprocessing to reduce the acquisition time is crucial. Moreover, in the event of employing antenna arraying with full spectrum combining, only the sub carrier harmonics need to be transmitted between sites, resulting in significant reduction in data rate transmission requirements. Software implementation of the BTD is described for various general-purpose computers.

Tsou, H.↗