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At least 505 records · Page 28

PNV J00444033+4113068: Early superhumps with 0.7 mag amplitude and non-red color

Abstract In the first days of WZ Sge-type dwarf nova (DN) outbursts, the 2 : 1 resonance induces a spiral arm structure in the accretion disk, which is observed as early superhumps in optical light curves. We reports on our optical observations of an eclipsing WZ Sge-type DN PNV J00444033+4113068 during its 2021 superoutburst using the 3.8 m Seimei telescope and through the Variable Star Network collaboration. The eclipse analysis showed that its orbital period was 0.055425534(1) d. Our observations confirmed early superhumps with an amplitude of 0.7 mag, the largest amplitude among known WZ Sge-type DNe. More interestingly, its early superhumps became the reddest around their secondary minimum, whereas other WZ Sge-type DNe show the reddest color around the early superhump maximum. The spectrum around the peak of the outburst showed two double-peaked emission lines of He ii 4686 Å and Hα with a peak separation of ≥700 km s−1, supporting a very high-inclination system. With the early superhump mapping, the unique profile and color of the early superhump are successfully reproduced by an accretion disk with a vertically extended double arm structure. Therefore, a large amplitude and a unique color behavior of the early superhumps in PNV J00444033+4113068 can be explained by the 2 : 1 resonance model along with other WZ Sge-type DNe.

Tampo, Yusuke (ORCID:0000000301963936)↗

Security-Constrained Unit Commitment for Electricity Market: Modeling, Solution Methods, and Future Challenges

This paper summarizes the technical activities of the IEEE Task Force on Solving Large Scale Optimization Problems in Electricity Market and Power System Applications. This Task Force was established by the IEEE Technology and Innovation Subcommittee to first review the state-of-the-art of the security-constrained unit commitment (SCUC) business model, its mathematical formulation, and solution techniques in solving electricity market clearing problems. The Task Force then investigated the emerging challenges of future market clearing problems and presented efforts in building benchmark mathematical and business models.

24 POWER TRANSMISSION AND DISTRIBUTION↗

The evolution of grain boundary energy in textured and untextured Ca–doped alumina during grain growth

The role of anisotropic grain boundary energy in grain growth is investigated using textured microstructures that contain a high proportion of special grain boundaries. Textured and untextured Ca–doped alumina was prepared by slip casting inside and outside a high magnetic field, respectively. At 1600°C, the textured microstructure exhibits faster growth than the untextured microstructure and its population of low–angle boundaries increases. Atomic force microscopy (AFM) is employed to measure the geometry of thermal grooves to assess the relative grain boundary energy of these systems before and after growth. In the textured microstructure, the grain boundary energy distribution narrows and shifts to a lower average energy. Conversely, the energy distribution broadens for the untextured microstructure as it grows and exhibits abnormal grain growth. Further analysis of the boundary networks neighboring abnormal grains reveals an energy incentive that facilitates their growth. These results suggest that coarsening is not the only dominant grain growth mechanism and that the system can lower its energy effectively by replacing high energy boundaries with those of low energy. The faster growth of lower energy boundaries suggests that isotropic simulations do not adequately account for anisotropic grain growth mechanisms or anisotropic mobility.

36 MATERIALS SCIENCE↗

Code for Experiment in Publication “Sensitivity Analysis in the Presence of Intrinsic Stochasticity for Discrete Fracture Network Simulations”

Following the Open Research requirements for AGU journals, we must release the code used to perform the experiment described in our recent publication, posted at (https://arxiv.org/abs/2312.04722). This code fits a joint emulator to data from a Discrete Fracture Network (DFN) simulation, performed using the open-source software DFNworks (https://dfnworks.lanl.gov/). All code to be released implements existing methods; there are no novel algorithms nor any major innovations to existing software.

Murph, Alexander↗

A deep learning approach to real-time HIV outbreak detection using genetic data

Pathogen genomic sequence data are increasingly made available for epidemiological monitoring. A main interest is to identify and assess the potential of infectious disease outbreaks. While popular methods to analyze sequence data often involve phylogenetic tree inference, they are vulnerable to errors from recombination and impose a high computational cost, making it difficult to obtain real-time results when the number of sequences is in or above the thousands. Here, we propose an alternative strategy to outbreak detection using genomic data based on deep learning methods developed for image classification. The key idea is to use a pairwise genetic distance matrix calculated from viral sequences as an image, and develop convolutional neutral network (CNN) models to classify areas of the images that show signatures of active outbreak, leading to identification of subsets of sequences taken from an active outbreak. We showed that our method is efficient in finding HIV-1 outbreaks with R0 ≥ 2.5, and overall a specificity exceeding 98% and sensitivity better than 92%. We validated our approach using data from HIV-1 CRF01 in Europe, containing both endemic sequences and a well-known dual outbreak in intravenous drug users. Our model accurately identified known outbreak sequences in the background of slower spreading HIV. Importantly, we detected both outbreaks early on, before they were over, implying that had this method been applied in real-time as data became available, one would have been able to intervene and possibly prevent the extent of these outbreaks. This approach is scalable to processing hundreds of thousands of sequences, making it useful for current and future real-time epidemiological investigations, including public health monitoring using large databases and especially for rapid outbreak identification.

59 BASIC BIOLOGICAL SCIENCES↗

Water Network Tool for Resilience (WNTR). User Manual, Version 0.2.3

The Water Network Tool for Resilience (WNTR, pronounced winter) is a Python package designed to simulate and analyze resilience of water distribution networks. Here, a network refers to the collection of pipes, pumps, valves, junctions, tanks, and reservoirs that make up a water distribution system. WNTR has an application programming interface (API) that is flexible and allows for changes to the network structure and operations, along with simulation of disruptive incidents and recovery actions. WNTR is based upon EPANET, which is a tool to simulate the movement and fate of drinking water constituents within distribution systems. Users are encouraged to be familiar with the use of EPANET and/or should have background knowledge in hydraulics and pressurized pipe network modeling before using WNTR. EPANET has a graphical user interface that might be a useful tool to facilitate the visualization of the network and the associated analysis results. Information on EPANET can be found at https://www.epa.gov/water-research/epanet. WNTR is compatible with EPANET 2.00.12 [Ross00]. In addition, users should have experience using Python, including the installation of additional Python packages. General information on Python can be found at https://www.python.org/.

54 ENVIRONMENTAL SCIENCES↗

Summary of NDC Capacity Building Workshop and Regional Seismic Travel Time (RSTT) in combination with Data Sharing and Integration Training

The NNSA Seismic Cooperation Program (SCP) sponsored Stephen Myers (LLNL), Michael Begnaud (LANL), Brian Young (SNL) and Istvan Bondar (Research Center for Astronomy and Earth Sciences, Hungary) to serve as a presenters/trainers at the “NDC Capacity Building Workshop and Regional Seismic Travel Time (RSTT) in combination with Data Sharing and Integration Training” September 4-8 2022 in Muscat, Oman (See Appendix A for the agenda). The workshop and training (workshop from here forward) was organized by the Comprehensive Nuclear-Test-Ban Treaty Organization (CTBTO) Provisional Technical Secretariat (PTS). The first half of the week was devoted to NDC workshop activities, and the second half was devoted to RSTT training. Fifty-five participants from 27 countries and the CTBTO-PTS attended the 5-day workshop (See Appendix B for list of participants and countries of origin). Presentations from the PTS described the International Monitoring System (IMS), International Data Centre (IDC) products, and metrics of regional data utilization. Contributed presentations from each country’s scientists included descriptions of regional and national networks, methods of data analysis, and needs for material and technical assistance. Training included an overview of the RSTT method and instruction on how to locate seismic events with the iLoc program, which utilizes RSTT travel times to reduce bias in event location estimates. Methods of seismic tomography and the need for a high-quality tomographic set, including seismological “ground truth”, were emphasized. Seismological “ground truth” or “GT” is a term that has come to mean both events with known location and events with well-characterized locations that are estimated using seismological data, typically with epicenter accuracy of 5 km or better. Notably, the instructional platform has migrated from UNIX shell scripts to Jupyter Notebooks. Jupyter Notebooks have the advantage being more visually intuitive, including display of graphics within the notebook. Each notebook includes every processing step that participants need to reproduce the entire exercise.

58 GEOSCIENCES↗

Elucidating Mechanisms of Rust Pathogenesis for Engineering Resistance in Poplar

The overall objective of this research was to elucidate the molecular basis for the virulence of Melampsora larici-populina towards Populus spp. in order to address the formidable challenge of engineering durable resistance in poplar against leaf rust. Our original research plan was built on the technically innovative approach of using dual host systems and known host defense proteins and pathogen avirulent effectors along with genome-wide approaches to identify key pathogenesis effectors of Melampsora larici-populina that target poplar defense and nutrient acquisition. Our efforts focused on developing high-throughput experimental approaches and systems to enable us to address our overarching hypothesis that rust effectors with homology to other fungal effectors will either bypass the poplar immune system and/or suppress effector-triggered immunity through conserved mechanisms, and that an analysis of these interaction networks would provide for new approaches to develop rust-resistant poplar. Three main objectives were originally proposed: (1) mine key rust effectors that suppress host immunity; (2) elucidate interaction networks in poplar targeted by key rust effectors; (3) generate transgenic poplar resources for identification of genes involved in pathogen infection or host defense triggered by rust. Generally, we worked towards all three objectives by developing and applying complementary molecular, genomic, biochemical and plant transformation approaches.

54 ENVIRONMENTAL SCIENCES↗

Infrasound Detections of Low-Magnitude Earthquakes: Preliminary Results of the West Texas Acoustic Experiment

Infrasound observations have grown increasingly important for the monitoring of earthquakes. While large earthquakes generate infrasound that can be detected thousands of kilometers away, there are few near-field observations of infrasound generated by low-magnitude events. We describe preliminary results of the West Texas Acoustic Experiment, during which infrasound sensors collected continuous data in the Permian Basin for a six-month period spanning January—June 2023. During this time, more than 1000 earthquakes with magnitudes between 1.2 and 4.2 occurred within 50 km of the network. We used spectral analysis, array processing, and manual inspection of waveforms to evaluate arrivals of infrasound signals following 84 events with magnitudes between 2.5 and 4.2. Here, we describe eight such events and the infrasound signals associated with each. We find detections of seismic-to-acoustic infrasound signals associated with seven events. We also find strong evidence of a laterally-propagating, purely acoustic wave generated by an M2.9 earthquake.

58 GEOSCIENCES↗

Emissions Characterization for Ammonia Fuel Blends in an Enclosed Swirl-Stabilized Diffusion Burner

This study investigates ammonia flames using the enclosed Sydney swirl burner (ESSB), focusing on detailed global emissions measurements. Emissions were measured via Fourier-transform-infrared (FTIR) spectrometer, utilizing a heated, long-path absorption cell. Hot, wet measurements of pertinent species were collected, and concentrations were determined via lineshape fitting in conjunction with the HITRAN database. Results show that partially cracked ammonia compositions yield lower emissions compared to pure NH3/H2, and small amounts of NH3 addition to CH4-containing fuel blends exhibit high levels of NOx and CO, with measurable HCN and unburnt CH4. Equilibrium calculations suggest trade-offs between chemical timescale, heat loss, and mixing. Future work will explore emissions sampling procedures and expand analysis using chemical reactor network modelling.

ammonia combustion↗

A priori examination of reduced chemistry models derived from canonical stirred reactors using three-dimensional direct numerical simulation datasets

Data-driven approaches to construct reduced chemical kinetic models, that rely heavily on thermo-chemical datasets with full chemical kinetics, have been gaining popularity. Datasets from direct numerical simulations (DNS) under three-dimensional (3-D) realistic turbulent flow conditions are desirable but limited to carefully designed parametric conditions due to the computational cost. Constructing datasets from a large ensemble of zero-dimensional stirred reactors like perfectly stirred reactor (PSR) and partially stirred reactor (PaSR) is a computationally efficient solution to consider the turbulence-chemistry interactions and cover a broad range of parametric conditions. In this paper, we derive reduced chemistry models from solutions of a large number of PSR and PaSR reactors using autoencoder (AE) neural networks and principal component analysis (PCA), and conduct a priori examination of the reduced models in three temporally evolving 3-D DNS jet flames featuring local extinction and re-ignition. The results show that the reduced models derived from PaSR datasets, i.e., AE-PaSR and PCA-PaSR, generally show significant improvement over the ones derived from PSR datasets. Among all the reduced models, AE-PaSR shows the best agreement with DNS results on the reconstruction accuracy and the representation of temporally evolving local extinction and re-ignition events.

Zhang, Pei↗

The direct and indirect drivers shaping RNA viral communities in grassland soil

Recent studies have revealed diverse RNA viral communities in soils. Yet, how environmental factors influence soil RNA viruses remains largely unknown. Here, we recovered RNA viral communities from 24 metatranscriptomes sequenced from grassland soils managed under a range of environmental conditions including 1) water content: 100% and 25% water holding capacity, 2) plant presence: planted with tall wheatgrass (Thinopyrum ponticum) and bare soil, 3) cultivar type: Alkar and Jose, and 4) soil depth: 0-5 cm and 15-25 cm. The recovered RNA viral communities were novel with nearly one-third of the RNA viral contigs uniquely detected in the studied grassland. The classified RNA viral contigs are mostly known as eukaryotic RNA viruses (74.7%) belonging to Phyla Duplornaviricota, Kitrinoviricota, Lenarviricota, and Pisuviricota. Eukaryotic RNA viruses of Family Mitoviridae as well as their natural hosts, Fungi, are one of the most dominant taxa. Consistent with the results of nonmetric multidimensional scaling analysis, the four environmental conditions (water content, plant presence, cultivar, and soil depth) significantly influence the assemblages of soil RNA viral communities as suggested by the correlation analysis and the random forest algorithm. The modularity analysis of the factor network and the structural equation modeling further support the hierarchical associations among the four environmental factors and the community factors representing the co-existing eukaryotic, prokaryotic, and RNA viral communities. The soil water content, plant presence, and type of cultivar demonstrate a significant positive impact on eukaryotic RNA viral richness directly as well as indirectly on eukaryotic RNA viral abundance via influencing the co-existing eukaryotic members in this soil. Our data also provide statistical support for the negative influence of soil depth on soil eukaryotic richness and abundances resulting in its indirect impact on soil eukaryotic RNA viral communities. This study provides field-relevant information on how environmental and community factors collectively shape soil RNA communities and contribute to ecological understanding of RNA viral survival under various environmental conditions and virus-host interactions in soil.

Wu, Ruonan↗

Nramp: Deprive and conquer?

Solute carriers 11 (Slc11) evolved from bacterial permease (MntH) to eukaryotic antibacterial defense (Nramp) while continuously mediating proton (H+)-dependent manganese (Mn2+) import. Also, Nramp horizontal gene transfer (HGT) toward bacteria led to mntH polyphyly. Prior demonstration that evolutionary rate-shifts distinguishing Slc11 from outgroup carriers dictate catalytic specificity suggested that resolving Slc11 family tree may provide a function-aware phylogenetic framework. Hence, MntH C (MC) subgroups resulted from HGTs of prototype Nramp (pNs) parologs while archetype Nramp (aNs) correlated with phagocytosis. PHI-Blast based taxonomic profiling confirmed MntH B phylogroup is confined to anaerobic bacteria vs. MntH A (MA)’s broad distribution; suggested niche-related spread of MC subgroups; established that MA-variant MH, which carries ‘eukaryotic signature’ marks, predominates in archaea. Slc11 phylogeny shows MH is sister to Nramp. Site-specific analysis of Slc11 charge network known to interact with the protonmotive force demonstrates sequential rate-shifts that recapitulate Slc11 evolution. 3D mapping of similarly coevolved sites across Slc11 hydrophobic core revealed successive targeting of discrete areas. The data imply that pN HGT could advantage recipient bacteria for H+-dependent Mn2+ acquisition and Alphafold 3D models suggest conformational divergence among MC subgroups. It is proposed that Slc11 originated as a bacterial stress resistance function allowing Mn2+-dependent persistence in conditions adverse for growth, and that archaeal MH could contribute to eukaryogenesis as a Mn2+ sequestering defense perhaps favoring intracellular growth-competent bacteria.

59 BASIC BIOLOGICAL SCIENCES↗

Fractal Characterization of Multimodal, Multiscale Images of Shale Rock Fracture Networks

An array of multimodal and multiscale images of fractured shale rock samples and analogs was collected with the aim of improving the numerical representation of fracture networks. 2D and 3D reconstructions of fractures and matrices span from 10 –6 to 100 m. The origin of the fracture networks ranged from natural to thermal maturation to hydraulically induced maturation. Images were segmented to improve fracture identification. Then, the fractal dimension and length distribution of the fracture networks were calculated for each image dataset. The resulting network connectivity and scaling associations are discussed at length on the basis of scale, sample and order of magnitude. Fracture network origin plays an important role in the resulting fracture systems and their scaling. Rock analogs are also evaluated using these descriptive tools and are found to be faithful depictions of maturation-induced fracture networks.

58 GEOSCIENCES↗

Lithium Metal Battery Quality Control via Transformer–CNN Segmentation

Lithium metal battery (LMB) has the potential to be the next-generation battery system because of its high theoretical energy density. However, defects known as dendrites are formed by heterogeneous lithium (Li) plating, which hinders the development and utilization of LMBs. Non-destructive techniques to observe the dendrite morphology often use X-ray computed tomography (XCT) to provide cross-sectional views. To retrieve three-dimensional structures inside a battery, image segmentation becomes essential to quantitatively analyze XCT images. This work proposes a new semantic segmentation approach using a transformer-based neural network called TransforCNN that is capable of segmenting out dendrites from XCT data. In addition, we compare the performance of the proposed TransforCNN with three other algorithms, U-Net, Y-Net, and E-Net, consisting of an ensemble network model for XCT analysis. Our results show the advantages of using TransforCNN when evaluating over-segmentation metrics, such as mean intersection over union (mIoU) and mean Dice similarity coefficient (mDSC), as well as through several qualitatively comparative visualizations.

Quenum, Jerome (ORCID:0000000271265853)↗