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Developmental gene regulatory network architecture across 500 million years of echinoderm evolution

Evolutionary change in morphological features must depend on architectural reorganization of developmental gene regulatory networks (GRNs), just as true conservation of morphological features must imply retention of ancestral developmental GRN features. Key elements of the provisional GRN for embryonic endomesoderm development in the sea urchin are here compared with those operating in embryos of a distantly related echinoderm, a starfish. These animals diverged from their common ancestor 520-480 million years ago. Their endomesodermal fate maps are similar, except that sea urchins generate a skeletogenic cell lineage that produces a prominent skeleton lacking entirely in starfish larvae. A relevant set of regulatory genes was isolated from the starfish Asterina miniata, their expression patterns determined, and effects on the other genes of perturbing the expression of each were demonstrated. A three-gene feedback loop that is a fundamental feature of the sea urchin GRN for endoderm specification is found in almost identical form in the starfish: a detailed element of GRN architecture has been retained since the Cambrian Period in both echinoderm lineages. The significance of this retention is highlighted by the observation of numerous specific differences in the GRN connections as well. A regulatory gene used to drive skeletogenesis in the sea urchin is used entirely differently in the starfish, where it responds to endomesodermal inputs that do not affect it in the sea urchin embryo. Evolutionary changes in the GRNs since divergence are limited sharply to certain cis-regulatory elements, whereas others have persisted unaltered.

NASA Program Fundamental Space Biology↗

Evolutionary and preservational constraints on origins of biologic groups: divergence times of eutherian mammals

Some molecular clock estimates of divergence times of taxonomic groups undergoing evolutionary radiation are much older than the groups' first observed fossil record. Mathematical models of branching evolution are used to estimate the maximal rate of fossil preservation consistent with a postulated missing history, given the sum of species durations implied by early origins under a range of species origination and extinction rates. The plausibility of postulated divergence times depends on origination, extinction, and preservation rates estimated from the fossil record. For eutherian mammals, this approach suggests that it is unlikely that many modern orders arose much earlier than their oldest fossil records.

Non-NASA Center↗

Life from the stars?

Scientists are now seriously considering the possibility that organic matter from interstellar space could have influenced, or even spurred, the origin of life on Earth. Various aspects of chemical evolution are discussed along with possible extraterrestrial sources responsible for contributing to Earth's life-producing, chemical composition. Specific topics covered include the following: interstellar matter, molecular clouds, asteroid dust, organic molecules in our solar system, interplanetary dust and comets, meteoritic composition, and organic-rich solar-system bodies.

Pendleton, Yvonne J.↗

The evolution of organic mantles on interstellar grains

By laboratory simulation of the chemical processes on dust grains it was investigated how solid organic materials can be produced in the interstellar medium. The ice mantles that accrete on grains in molecular clouds, consisting primarily of H2O, CO, H2CO, NH3, and O2, are irradiated by the internal UV field, resulting in the storage of radicals upon photodissociation of the original molecules. Transient heating events lead to the production of oxygen-rich organic species by recombination reactions. The experiments indicated that in this way the observed amount of organic material can be produced if a grain passes a few times through a molecular cloud during its life. After the destruction of the cloud the grains enter a more diffuse medium. Here they are subjected to the interstellar UV field as well as to collisions with atomic hydrogen. Experiments show that the intense photoprocessing results in the removal of small species like H2O and NH3 as well as in carbonization of the organic molecules. Contrary to this, the atomic H flux will maintain a certain hydrogen level in the mantle. These processes likely convert the original, oxygen-rich organics into an unsaturated hydrocarbon type material such as that observed towards IRS 7 and in Comet Halley grains.

Schutte, Willem A.↗

multiplex gas chromatography: A novel analytical technique for future planetary studies

Determination of molecular species comprised of the biogenic elements in the atmospheres of planets and moons of the solar system is one the foremost requirements of the exobiologist studying chemical evolution and the origin of life. Multiplex chromatography is a technique where many samples are pseudo-randomly introduced to the chromatograph without regard to elution of preceding components. The resulting data are then reduced using mathematical techniques such as cross correlation or Fourier Transforms. To demonstrate the utility of this technique for future solar system exploration, chemical modulators were developed. Several advantages were realized from this technique in combination with these modulators: improvement in detection limits of several orders of magnitude, improvement in the analysis of complex mixtures by selectively modulating some of the components present in the sample, increase in the number of analyses that can be conducted in a given period of time, and reduction in the amount of expendables needed to run an analysis. In order to apply this technique in a real application, methane in ambient air was monitored continuously over a period of one week. By using ambient air as its own carrier all expendables beyond power were eliminated.

Valentin, J. R.↗

Molecular dynamics studies of simple membrane-water interfaces: Structure and functions in the beginnings of cellular life

Molecular dynamics computer simulations of the structure and functions of a simple membrane are performed in order to examine whether membranes provide an environment capable of promoting protobiological evolution. Our model membrane is composed of glycerol 1-monooleate. It is found that the bilayer surface fluctuates in time and space, occasionally creating thinning defects in the membrane. These defects are essential for passive transport of simple ions across membranes because they reduce the Born barrier to this process by approximately 40%. Negative ions are transferred across the bilayer more readily than positive ions due to favorable interactions with the electric field at the membrane-water interface. Passive transport of neutral molecules is, in general, more complex than predicted by the solubility-diffusion model. In particular, molecules which exhibit sufficient hydrophilicity and lipophilicity concentrate near membrane surfaces and experience 'interfacial resistance' to transport. The membrane-water interface forms an environment suitable for heterogeneous catalysis. Several possible mechanisms leading to an increase of reaction rates at the interface are discussed. We conclude that vesicles have many properties that make them very good candidates for earliest protocells. Some potentially fruitful directions of experimental and theoretical research on this subject are proposed.

Pohorille, Andrew↗

Ion Chemistry in Atmospheric and Astrophysical Plasmas

There are many differences and also remarkable similarities between the ion chemistry and physics of planetary ionospheres and the ion chemistry and physics of astronomical environments beyond the solar system. In the early Universe, an expanded cooling gas of hydrogen and helium was embedded in the cosmic background radiation field and ionized by it. As the Universe cooled by adiabatic expansion, recombination occurred and molecular formation was driven by catalytic reactions involving the relict electrons and protons. Similar chemical processes are effective in the ionized zones of gaseous and planetary nebulae and in stellar winds where the ionization is due to radiation from the central stars, in the envelopes of supernovae where the ionization is initiated by the deposition of gamma-rays, in dissociative shocks where the ionization arises from electron impacts in a hot gas and in quasar broad-line region clouds where the quasar is responsible for the ionization. At high altitudes in the atmospheres of the Jovian planets, the main constituents are hydrogen and helium and the ion chemistry and physics is determined by the same processes, the source of the ionization being solar ultraviolet radiation and cosmic rays. After the collapse of the first distinct astronomical entities to emerge from the uniform flow, heavy elements were created by nuclear burning in the cores of the collapsed objects and distributed throughout the Universe by winds and explosions. The chemistry and physics became more complicated. Over 90 distinct molecular species have been identified in interstellar clouds where they are ionized globally by cosmic ray impacts and locally by radiation and shocks associated with star formation and evolution. Complex molecules have also been found in circumstellar shells of evolved stars. At intermediate and low altitudes in the Jovian atmospheres, the ion chemistry is complicated by the increasing abundance of heavy elements such as carbon, and an extensive array of complex molecules has been predicted. Reactions involving heavy elements dominate the structure of the ionspheres of the terrestrial planets and the satellites Titan and Triton.

Dalgarno, A.↗

The Composition of Organics and Volatiles in the Interstellar Medium

Tremendous progress has been made in our understanding of the composition of interstellar dust through the combined use of telescopic observations, theoretical models, laboratory studies of analogs, and the analysis of interstellar samples found in meteorites. It is increasingly clear that the interstellar medium (ISM) contains an enormous diversity of materials created by a wide range of chemical and physical processes. This paper reviews some of our current knowledge of the organic and volatile materials thought to exist in the ISM. These compounds supply a significant portion of the material that makes up the interstellar dense molecular clouds from which new stars and planetary systems are formed, and thus represents an important reservoir of material that could play key roles in the formation and evolution of life. This paper will largely focus on solid materials, as opposed to gases, since solids contain a major fraction of the heavier elements in clouds and because solids are most likely to survive incorporation into new planetary systems in identifiable form. The paper concludes with a brief discussion of the astrobiological relevance of some of the compounds now known or suspected to be present in the ISM.

Sandford, Scott A.↗

Destruction of Interstellar Dust

Interstellar dust is an important component of the interstellar medium. Dust grains are the dominant opacity source and thus regulate the radiative transfer in the interstellar medium. Besides the spectral characteristics of sources, dust therefore influences directly the molecular composition of clouds through photodissociation and the heating of the gas through the photoelectric effect. Furthermore, dust grains also provide surfaces for active chemistry. This paper will review the destruction of interstellar dust with an emphasis on processing by interstellar shocks. Interstellar dust is affected by a variety of processes. Stars in the late stages of their evolution form dust grains by chemical nucleation and growth and injected them into the ISM. Grains in the ISM are processed by strong shock waves which sputter, vaporize, diamondize, and shatter them. The physics of interstellar shock waves and of these destruction processes will be reviewed. The ISM is organized in a number of phases: HI and molecular clouds, warm (neutral/ionized) intercloud medium, and coroner gas. Dust destruction is dominated by supernova shock waves in the intercloud medium. Because of rapid exchange of dust and gas between the phases, the effects of this are felt through all phases. This will be briefly discussed.

Tielens, A. G. G. M.↗

Molecular clouds in Orion and Monoceros

A 1.2-m millimeter-wave telescope has been used to survey CO in the constellations of Orion and Monoceros. Many new molecular clouds have been found. The distribution of molecular material shows two striking characteristics: (1) Most of the molecular clouds in this region appear to be connected by continuous extensions and filaments. To judge from continuity in radial velocity, most of these connections appear to be real, and are not merely the result of projection along the line of sight; (2) There are at least two slender filamentary features longer than 10 deg in angular extent. These filaments may connect the molecular clouds lying well out of the Galactic plane to clouds lying in the plane. Their shape and orientation suggest that magnetic fields may play a role in their evolution. The observed velocity gradients may be explained by accelerated gas flow along the filament.

Morris, M.↗

The early atmosphere - A new picture

Over the last few years, discoveries in astronomy, geochemistry, and atmospheric chemistry have resulted in a new picture of how our planet and its atmosphere formed. The traditional view held that the early atmosphere was composed of methane, ammonia, and molecular hydrogen, but the actual composition may have been nitrogen, carbon dioxide, and water vapor. The history leading to the present understanding is discussed and topics covered include: chemical evolution, origin of the atmosphere, atmospheric evolution on earth, Venus, and Mars, and prebiological atmospheric oxygen and the early sun.

Levine, Joel S.↗

Far Ultraviolet Astronomy

The Far Ultraviolet Spectroscopic Explorer (FUSE) is studying a wide range of astronomical problems in the 905-1187 Angstrom wavelength region through the use of high resolution spectroscopy. The FUSE bandpass forms a nearly optimal complement to the spectral coverage provided by the Hubble Space Telescope (HST), which extends down to approximately 1170 Angstroms. The photoionization threshold of atomic hydrogen (911 Angstroms) sets a natural short-wavelength limit for the FUV. FUSE was launched in June 1999 from Cape Canaveral, Florida, on a Delta II rocket into a 768 km circular orbit. Scientific observations started later that year. This spectral region is extremely rich in spectral diagnostics of astrophysical gases over a wide range of temperatures (100 K to over 10 million K). Important strong spectral lines in this wavelength range include those of neutral hydrogen, deuterium, nitrogen, oxygen, and argon (H I, D I, N I, O I, and Ar I), molecular hydrogen (H2), five-times ionized oxygen (O VI), and several ionization states of sulfur (S III - S VI). These elements are essential for understanding the origin and evolution of the chemical elements, the formation of stars and our Solar System, and the structure of galaxies, including our Milky Way. FUSE is one of NASA's Explorer missions and a cooperative project of NASA and the space agencies of Canada and France. These missions are smaller, more scientifically focused missions than the larger observatories, like Hubble and Chandra. FUSE was designed, built and operated for NASA by the Department of Physics and Astronomy at Johns Hopkins University. Hundreds of astronomers world-wide are using FUSE for a wide range of scientific research. Some of the important scientific discoveries from the first two years of the mission are described.

Sonneborn, George↗

Processing of Icy Mantles in Protostellar Envelopes

The 4.5-4.8 micron spectral region provides two potential diagnostics of radiative or thermal processing of interstellar ices in the environs of embedded stars in molecular clouds. A broad absorption feature centered at 4.62 micron is seen in the spectra of several young stellar objects (YSO's) and attributed to C-N triple bonds in a nitrile or isonitrile. As CN-bearing solids in the laboratory are produced by energetic radiative processing of ices containing nitrogen, detection of this feature in YSO's is taken as evidence for (1) the presence of nitrogen in the unprocessed cloud ices, and (2) evolution of the ice in the vicinity of the embedded source. The adjacent feature at 4.67 micron, identified with solid CO, provides not only quantitative information on CO itself but also indirect evidence for the presence of other species; its position and profile are sensitive to the molecular environment of the CO molecules in the ice mantle, and may be used to constrain both the composition and thermal/radiative history of the ice. One important example is the possibility to detect CO2, which is produced easily in the laboratory by UV irradiation of CO-rich or CH3OH-rich ices. CO embedded in a CO2 matrix gives a characteristic spectral signature distinct from other CO-bearing mixtures investigated to date. We have obtained CO absorption profiles of three young stellar objects in order to investigate their ice mantle composition.

Chiar, J. E.↗

Cosmic evolution of extragalactic C 1, C 2, and CO luminosity

Carbon is the fourth most abundant element in the Galaxy with an abundance of approximately 4 x 10(exp -4) relative to hydrogen. Of all abundant metals it is the easiest to observe in the interstellar medium (ISM). Carbon can be found in four dominant forms: dust grains, C 2, C 1, and CO. The latter is the most abundant molecule (next to H2) in molecular clouds. All three gas-phase forms produce strong sub-mm wavelength emission lines and are the principal tracers of the warm and dense neutral phases of the ISM. We calculate the gas-phase abundances of neutral carbon (C 1), ionized carbon (C 2), and carbon monoxide (CO) as a function of cosmic time or redshift z in an idealized scenario of galactic evolution.

Bally, John↗

Ultraviolet spectrometer observations of Uranus

The Voyager 2 UV spectrometer was used to scan the Uranus atmosphere at wavelengths from 500-1700 A with a field of view of 0.1 x 0.86 deg. The temperature and composition of the upper atmosphere were determined through occultations of light from gamma Pegasi, nu Geminorum and the sun. The data indicated a substantial gas density (100 million H atoms/cu cm) at about 28,000 km from the Uranus center, suggesting that gas drag plays a significant role in ring evolution. The distributions of CH4 and C2H2 in the lower atmosphere were also estimated. An electroglow emission was detected on the sunlit side, and attributed to emissions from atomic and molecular hydrogen excited by low energy electrons. An auroral glow was also observed, and exhibited evidence of an energy input equal to that of the electroglow. Finally, estimates of the C2H2 mixing ratio and the vertical column abundance of H2 are calculated.

Broadfoot, A. L.↗

The evoluation of young stellar object disks and their environment

By carrying out direct imaging and spectroscopic observations of young, pre-main sequence stars in nearby molecular clouds researchers have begun: to define the frequency with which disks of approximately solar system size and mass form around young stars, and to understand the timescale for disk evolution; to characterize the early radiation (ultraviolet and keV particle) environment of circumstellar disks through study of evolution of stellar winds, wind/disk interactions and the UV and optical emission characteristics of young stars; and to understand the evolution of the solid and gaseous constituents of disks through observations of absorption features in circumstellar gas, broad emission features produced by organic compounds on grain surfaces, and absorption features (e.g., ice) produced in grain mantles. These programs offer the possibilty of relating results from astrophysical studies of the environment to newly-formed stars to the record of planet formation preserved in the solar system. Researchers completed a spectroscopic survey of 30 T Tauri stars with ages ranging from approximately 2 x 10 to the 5th power to 3 x 10 to the 7th power years. From analysis of (OI) and (SII) emission lines, it was concluded that all but two of the stars in our sample are surrounded by optically opaque disks of dimension approximately 50 AU. The two remaining objects show evidence consistent with partial disk clearing (at an age approximately 3 x 10 to the 6th power year). R and I band CFHT observations yielded detections of disks of dimension approximately 100 AU surrounding 5 additional T Tauri stars.

Strom, Stephen E.↗

Glycolonitrile oligomerization: structure of isolated oxazolines, potential heterocycles on the early earth

A study of glycolonitrile polymerization has led to the isolation and characterization of two 2,5-dihydro-4-aminooxazoles, 4 and 5. Previous reports have misassigned these structures as s-triazines or pyrimidines. X-ray diffraction analysis of crystals of 4 and an acetylated oxazole derivative of 5 (6) confirm the proposed structures. Ab initio computations are used to assess the relative thermodynamic stability of three trimer isomers (an s-triazine, an aminohydroxypyrimidine, and an aminooxazoline), and the results indicate that 4 is a novel kinetic product. Mechanistic considerations rationalize kinetic oxazole formation over the more customary triazine or pyrimidine trimers.

Non-NASA Center↗

Carbon in the Universe

Over the past few decades, NASA missions have revealed that we live in a Universe that is not a hydrogen-dominated, physicist's paradise, but in a molecular Universe with complex molecules directly interwoven into its fabric. These missions have shown that molecules are an abundant and important component of astronomical objects at all stages of their evolution and that they play a key role in many processes that dominate the structure and evolution of galaxies. Closer to home in our galaxy, the Milky Way, they have revealed a unique and complex organic inventory of regions of star and planet formation that may well represent some of the prebiotic roots to life. Astrobiology emerges from the great interest in understanding astrochemical evolution from simple to complex molecules, especially those with biogenic potential and the roles they may play as primordial seeds in the origin of life on habitable worlds. The first part of this talk will highlight how infrared spectroscopic studies of interstellar space, combined with dedicated laboratory simulations, have revealed the widespread presence of complex organics across deep space. The remainder of the presentation will focus on the evolution of these materials and astrobiology.

Astrobiology↗