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At least 505 records · Page 28

Revisiting matrix-based inversion of scanning mobility particle sizer (SMPS) and humidified tandem differential mobility analyzer (HTDMA) data

Abstract. Tikhonov regularization is a tool for reducing noise amplification during data inversion. This work introduces RegularizationTools.jl, a general-purpose software package for applying Tikhonov regularization to data. The package implements well-established numerical algorithms and is suitable for systems of up to ∼ 1000 equations. Included is an abstraction to systematically categorize specific inversion configurations and their associated hyperparameters. A generic interface translates arbitrary linear forward models defined by a computer function into the corresponding design matrix. This obviates the need to explicitly write out and discretize the Fredholm integral equation, thus facilitating fast prototyping of new regularization schemes associated with measurement techniques. Example applications include the inversion involving data from scanning mobility particle sizers (SMPSs) and humidified tandem differential mobility analyzers (HTDMAs). Inversion of SMPS size distributions reported in this work builds upon the freely available software DifferentialMobilityAnalyzers.jl. The speed of inversion is improved by a factor of ∼ 200, now requiring between 2 and 5 ms per SMPS scan when using 120 size bins. Previously reported occasional failure to converge to a valid solution is reduced by switching from the L-curve method to generalized cross-validation as the metric to search for the optimal regularization parameter. Higher-order inversions resulting in smooth, denoised reconstructions of size distributions are now included in DifferentialMobilityAnalyzers.jl. This work also demonstrates that an SMPS-style matrix-based inversion can be applied to find the growth factor frequency distribution from raw HTDMA data while also accounting for multiply charged particles. The outcome of the aerosol-related inversion methods is showcased by inverting multi-week SMPS and HTDMA datasets from ground-based observations, including SMPS data obtained at Bodega Marine Laboratory during the CalWater 2/ACAPEX campaign and co-located SMPS and HTDMA data collected at the US Department of Energy observatory located at the Southern Great Plains site in Oklahoma, USA. Results show that the proposed approaches are suitable for unsupervised, nonparametric inversion of large-scale datasets as well as inversion in real time during data acquisition on low-cost reduced-instruction-set architectures used in single-board computers. The included software implementation of Tikhonov regularization is freely available, general, and domain-independent and thus can be applied to many other inverse problems arising in atmospheric measurement techniques and beyond.

54 ENVIRONMENTAL SCIENCES↗

Strategies for community-sourced biocuration in bioinformatics: a case study on MIBiG 4.0

Biocuration is essential to transform molecular sequence data into standardized, machine-readable resources. Such curated datasets enable comparative analysis, predictive modeling, and data integration across bioinformatics platforms. While professional biocuration is resource-intensive and usually limited to institutional settings, community-driven approaches can mobilize large-scale annotation of specialized datasets and are more resilient to disruptions in scientific funding. Here, we present a model for community-powered curation applied to the Minimum Information about a Biosynthetic Gene Cluster (MIBiG) repository. Through a framework of workflows for metadata capture, annotation validation, and contributor coordination, the MIBiG 4.0 initiative recruited 267 scientists across 178 institutions from 33 countries, volunteering an estimated 4000 h of work. These efforts expanded the MIBiG repository by 22% and enhanced its usability in downstream molecular data analyses in comparative genomic analyses, natural product discovery, and machine learning applications. We provide strategies and actionable lessons for adopting this model, supporting the sustainability of curated bioinformatics resources central to nucleic acid research and related fields.

biocuration↗

Dynamic mode decomposition with core sketch

With the increase in collected data volumes, either from experimental measurements or high fidelity simulations, there is an ever-growing need to develop computationally efficient tools to process, analyze, and interpret these datasets. Modal analysis techniques have gained great interest due to their ability to identify patterns in the data and extract valuable information about the system being considered. Dynamic mode decomposition (DMD) relies on elements of the Koopman approximation theory to compute a set of modes, each associated with a fixed oscillation frequency and a decay/growth rate. Extracting these details from large datasets can be computationally expensive due to the need to implement singular value decomposition of the input data matrix. Sketching algorithms have become popular in numerical linear algebra where statistical theoretic approaches are utilized to reduce the cost of major operations. A sketch of a matrix is another matrix, which is significantly smaller, but still sufficiently approximates the original system. We put forth an efficient DMD framework, SketchyDMD, based on a core sketching algorithm that captures information about the range and corange (their mutual relationship) of input data. The proposed sketching-based framework can accelerate various portions of the DMD routines, compared to classical methods that operate directly on the raw input data. We conduct numerical experiments using the spherical shallow water equations as a prototypical model in the context of geophysical flows. In conclusion, we show that the proposed SketchyDMD is superior to existing randomized DMD methods that are based on capturing only the range of the input data.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

One‐at‐a‐Time Parameter Perturbation Ensemble of the Community Land Model, Version 5.1

Comprehensive land models are subject to significant parametric uncertainty, which can be hard to quantify due to the large number of parameters and high model computational costs. We constructed a large parameter perturbation ensemble (PPE) for the Community Land Model version 5.1 with biogeochemistry configuration (CLM5.1-BGC). We performed more than 2,000 simulations perturbing 211 parameters across six forcing scenarios. This provides an expansive data set, which can be used to identify the most influential parameters on a wide range of output variables globally, by biome, or by plant functional type. We found that parameter effects can exceed scenario effects and that a small number of parameters explains a large fraction of variance across our ensemble. The most important parameters can differ regionally and also based on the forcing scenario. The software infrastructure developed for this experiment has greatly reduced the human and computer time needed for CLM PPEs, which can facilitate routine investigation of parameter sensitivity and uncertainty, as well as automated calibration.

Kennedy, Daniel [NSF National Center for Atmospher↗

Modern Approaches to Exact Diagonalization and Selected Configuration Interaction with the Adaptive Sampling CI Method

Recent advances in selected configuration interaction methods have made them competitive with the most accurate techniques available and, hence, creating an increasingly powerful tool for solving quantum Hamiltonians. In this work, we build on recent advances from the adaptive sampling configuration interaction (ASCI) algorithm. We show that a useful paradigm for generating efficient selected CI/exact diagonalization algorithms is driven by fast sorting algorithms, much in the same way iterative diagonalization is based on the paradigm of matrix vector multiplication. We present several new algorithms for all parts of performing a selected CI, which includes new ASCI search, dynamic bit masking, fast orbital rotations, fast diagonal matrix elements, and residue arrays. The ASCI search algorithm can be used in several different modes, which includes an integral driven search and a coefficient driven search. The algorithms presented here are fast and scalable, and we find that because they are built on fast sorting algorithms they are more efficient than all other approaches we considered. After introducing these techniques, we present ASCI results applied to a large range of systems and basis sets to demonstrate the types of simulations that can be practically treated at the full-CI level with modern methods and hardware, presenting double- and triple-ζ benchmark data for the G1 data set. The largest of these calculations is Si$_2$H$_6$ which is a simulation of 34 electrons in 152 orbitals. We also present some preliminary results for fast deterministic perturbation theory simulations that use hash functions to maintain high efficiency for treating large basis sets.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Challenges and Vision for Standardization of Biopolymer Data Sets for Machine Learning

Machine learning (ML) is transforming materials research, yet potential for biopolymer discovery remains constrained by fragmented data and nonstandardized reporting. Biopolymers differ significantly from synthetic polymers, requiring specialized approaches to represent their biosynthetic origins, hierarchical structures, and application-specific metrics. In this Perspective, we identify three core challenges limiting biopolymer representation: information encoding, data quality, and data sharing. We describe the most pressing issues and propose commensurate approaches to address each key challenge. Recommendations include the design and adoption of biopolymer-specific fingerprinting and representation frameworks, development of hybrid human-large language model (LLM) data extraction strategies, and expanding Findable, Accessible, Interoperable, Reusable (FAIR)-compliant repositories. We propose a robust foundation to define interoperable, high-quality data sets that capture the full context of biopolymer materials. Standardized metadata, shared ontologies, and community-driven infrastructure would enable scalable, reproducible workflows and accelerate the ML-driven development of biopolymers.

36 MATERIALS SCIENCE↗

First study of polarized proton-proton scattering with small-𝑥 helicity evolution

We perform a phenomenological study of helicity-dependent parton distribution functions (PDFs) using small-𝑥 helicity evolution equations, incorporating for the first time single-inclusive jet production data in polarized proton-proton (𝑝⁢𝑝) scattering at parton momentum fractions 𝑥 <0.1. We also simultaneously include double-longitudinal spin asymmetries in inclusive and semi-inclusive deep-inelastic scattering probing 𝑥 <0.1. Employing the polarized small-𝑥 pure-glue calculation of 𝑝⁢𝑝 → 𝑔⁡𝑋 for the jet production cross section, we modify the large-𝑁 𝑐 &𝑁 𝑓 KPS-CTT evolution equations by setting 𝑁 𝑓 = 0 to replicate the large-𝑁𝑐 (pure-glue) limit, while retaining external quark flavors for the spinor field operators. We find that the 𝑝⁢𝑝 data have a considerable impact on the helicity PDFs at small 𝑥, reducing their uncertainties and leading to a total quark and gluon helicity in the proton for 𝑥 < 0.1 of −0.04 ±0.23. Combining our analysis with a recent JAM helicity PDF analysis of the world polarized data, which includes 𝑥 > 0.1, we find a total quark and gluon helicity contribution for 𝑥 >10 −7 of between 0.02 and 0.51.

Adamiak, Daniel [Michigan State University] (ORCID↗

The Age of Evapotranspiration: Lower‐Bound Constraints From Distributed Water Fluxes Across the Continental United States

Abstract Unlike streamflow, which can be sampled in aggregate at the catchment outlet, evapotranspiration (ET) is spatially dispersed, challenging large‐scale age estimation. Here, we introduce an approach for constraining the age of ET via mass balance and present the minimum flux‐weighted age of ET across the continental United States using distributed, publicly available water flux data sets. The lower‐bound constraint on ET age can be calculated by assuming that ET is preferentially sourced from the most recent precipitation through a last‐in, first‐out algorithm. From 2012 to 2017, ET was at least several months old across large areas of the western continental United States, including in Mediterranean and (semi‐)arid climate zones and shrub and evergreen needleleaf plant communities. The primary limitation of this approach is that it provides only a minimum flux‐weighted average age to satisfy the mass balance of outgoing fluxes; true ET fluxes are composed of distributions of ages and may be composed of much older water. The primary advantage of the approach is that flux time series of precipitation and ET are sufficient to constrain ET age, and model parameterization is unnecessary. ET ages can be used to validate tracer‐aided and modeling approaches and inform studies of biogeochemistry, water‐rock interactions, and plant water sourcing under drought.

Hahm, W. J.↗

Search for $t\overline{t}$ resonances in fully hadronic final states in $pp$ collisions at $ \sqrt{s} $ = 13 TeV with the ATLAS detector

This paper presents a search for new heavy particles decaying into a pair of top quarks using 139 fb -1 of proton-proton collision data recorded at a centre-of-mass energy of √s = 13 TeV with the ATLAS detector at the Large Hadron Collider. The search is performed using events consistent with pair production of high-transverse-momentum top quarks and their subsequent decays into the fully hadronic final states. The analysis is optimized for resonances decaying into a $t\overline{t}$ pair with mass above 1.4 TeV, exploiting a dedicated multivariate technique with jet substructure to identify hadronically decaying top quarks using large-radius jets and evaluating the background expectation from data. No significant deviation from the background prediction is observed. Limits are set on the production cross-section times branching fraction for the new Z' boson in a topcolor-assisted-technicolor model. The Z' boson masses below 3.9 and 4.7 TeV are excluded at 95% confidence level for the decay widths of 1% and 3%, respectively.

Heavy quark production↗

Machine learned interatomic potential for dispersion strengthened plasma facing components

Tungsten (W) is a material of choice for the divertor material due to its high melting temperature, thermal conductivity, and sputtering threshold. However, W has a very high brittle-to-ductile transition temperature, and at fusion reactor temperatures (≥1000 K), it may undergo recrystallization and grain growth. Dispersion-strengthening W with zirconium carbide (ZrC) can improve ductility and limit grain growth, but much of the effects of the dispersoids on microstructural evolution and thermomechanical properties at high temperatures are still unknown. We present a machine learned Spectral Neighbor Analysis Potential for W–ZrC that can now be used to study these materials. In order to construct a potential suitable for large-scale atomistic simulations at fusion reactor temperatures, it is necessary to train on ab initio data generated for a diverse set of structures, chemical environments, and temperatures. Further accuracy and stability tests of the potential were achieved using objective functions for both material properties and high temperature stability. Additionally, validation of lattice parameters, surface energies, bulk moduli, and thermal expansion is confirmed on the optimized potential. Tensile tests of W/ZrC bicrystals show that although the W(110)–ZrC(111) C-terminated bicrystal has the highest ultimate tensile strength (UTS) at room temperature, observed strength decreases with increasing temperature. At 2500 K, the terminating C layer diffuses into the W, resulting in a weaker W–Zr interface. Meanwhile, the W(110)–ZrC(111) Zr-terminated bicrystal has the highest UTS at 2500 K.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

The ASHRAE Great Energy Predictor III competition: Overview and results

In late 2019, ASHRAE hosted the Great Energy Predictor III (GEPIII) machine learning competition on the Kaggle platform. This launch marked the third energy prediction competition from ASHRAE and the first since the mid-1990s. In this updated version, the competitors were provided with over 20 million points of training data from 2,380 energy meters collected for 1,448 buildings from 16 sources. This competition’s overall objective was to find the most accurate modeling solutions for the prediction of over 41 million private and public test data points. Furthermore, the competition had 4,370 participants, split across 3,614 teams from 94 countries who submitted 39,403 predictions. In addition to the top five winning workflows, the competitors publicly shared 415 reproducible online machine learning workflow examples (notebooks), including over 40 additional, full solutions. This paper gives a high-level overview of the competition preparation and dataset, competitors and their discussions, machine learning workflows and models generated, winners and their submissions, discussion of lessons learned, and competition outputs and next steps. The most popular and accurate machine learning workflows used large ensembles of mostly gradient boosting tree models, such as LightGBM. Similar to the first predictor competition, preprocessing of the data sets emerged as a key differentiator.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

Measuring the thermal and ionization state of the low- z IGM using likelihood free inference

ABSTRACT We present a new approach to measure the power-law temperature density relationship $T=T_0 (\rho/ \bar{\rho })^{\gamma -1}$ and the UV background photoionization rate $\Gamma _{{{{\rm H\, {\small I}}}}{}}$ of the intergalactic medium (IGM) based on the Voigt profile decomposition of the Ly α forest into a set of discrete absorption lines with Doppler parameter b and the neutral hydrogen column density $N_{\rm H\, {\small I}}$. Previous work demonstrated that the shape of the $b-N_{{{{\rm H\, {\small I}}}}{}}$ distribution is sensitive to the IGM thermal parameters T0 and γ, whereas our new inference algorithm also takes into account the normalization of the distribution, i.e. the line-density dN/dz, and we demonstrate that precise constraints can also be obtained on $\Gamma _{{{{\rm H\, {\small I}}}}{}}$. We use density-estimation likelihood-free inference (DELFI) to emulate the dependence of the $b-N_{{{{\rm H\, {\small I}}}}{}}$ distribution on IGM parameters trained on an ensemble of 624 nyx hydrodynamical simulations at z = 0.1, which we combine with a Gaussian process emulator of the normalization. To demonstrate the efficacy of this approach, we generate hundreds of realizations of realistic mock HST/COS data sets, each comprising 34 quasar sightlines, and forward model the noise and resolution to match the real data. We use this large ensemble of mocks to extensively test our inference and empirically demonstrate that our posterior distributions are robust. Our analysis shows that by applying our new approach to existing Ly α forest spectra at z ≃ 0.1, one can measure the thermal and ionization state of the IGM with very high precision ($\sigma _{\log T_0} \sim 0.08$ dex, σγ ∼ 0.06, and $\sigma _{\log \Gamma _{{{{\rm H\, {\small I}}}}{}}} \sim 0.07$ dex).

79 ASTRONOMY AND ASTROPHYSICS↗

Extremely Scalable Distributed Computation of Contour Trees via Pre-Simplification

Contour trees offer an abstract representation of the level set topology in scalar fields and are widely used in topological data analysis and visualization. However, applying contour trees to large-scale scientific datasets remains challenging due to scalability limitations. Recent developments in distributed hierarchical contour trees have addressed these challenges by enabling scalable computation across distributed systems. Building on these structures, advanced analytical tasks—such as volumetric branch decomposition and contour extraction—have been introduced to facilitate large-scale scientific analysis. Despite these advancements, such analytical tasks substantially increase memory usage, which hampers scalability. In this paper, we propose a pre-simplification strategy to significantly reduce the memory overhead associated with analytical tasks on distributed hierarchical contour trees. We demonstrate enhanced scalability through strong scaling experiments, constructing the largest known contour tree—comprising over half a trillion nodes with complex topology—in under 15 minutes on a dataset containing 550 billion elements.

Li, Mingzhe [University of Utah]↗

Discrete-Direct Model Calibration and Uncertainty Propagation Method Confirmed on Multi-Parameter Plasticity Model Calibrated to Sparse Random Field Data

A discrete direct (DD) model calibration and uncertainty propagation approach is explained and demonstrated on a 4-parameter Johnson-Cook (J-C) strain-rate dependent material strength model for an aluminum alloy. The methodology's performance is characterized in many trials involving four random realizations of strain-rate dependent material-test data curves per trial, drawn from a large synthetic population. The J-C model is calibrated to particular combinations of the data curves to obtain calibration parameter sets which are then propagated to “Can Crush” structural model predictions to produce samples of predicted response variability. These are processed with appropriate sparse-sample uncertainty quantification (UQ) methods to estimate various statistics of response with an appropriate level of conservatism. This is tested on 16 output quantities (von Mises stresses and equivalent plastic strains) and it is shown that important statistics of the true variabilities of the 16 quantities are bounded with a high success rate that is reasonably predictable and controllable. The DD approach has several advantages over other calibration-UQ approaches like Bayesian inference for capturing and utilizing the information obtained from typically small numbers of replicate experiments in model calibration situations—especially when sparse replicate functional data are involved like force–displacement curves from material tests. The DD methodology is straightforward and efficient for calibration and propagation problems involving aleatory and epistemic uncertainties in calibration experiments, models, and procedures.

42 ENGINEERING↗

An Assessment of Non-Powered Dam Hydropower Development Opportunities in the United States

Retrofitting non-powered dams (NPDs) to add hydropower offers multiple benefits over traditional, new hydropower development. Since much of the civil works infrastructure already exists, many retrofits require minimal new construction and can leverage existing water conveyances and discharge for generation. Although NPDs vary considerably in terms of their defining characteristics, identifying similarities helps support targeted investment and find opportunities to develop solutions for common challenges. With the publication of NPD-related data in 2022 (Hansen et al. 2022b), the US Department of Energy and relevant stakeholders are equipped with key information across roughly 89,000 US NPDs. These data represent the best-available information to date and extend beyond previous assessments of potential power capacity by describing design, operational, socioeconomic, environmental aspects of NPDs (Hadjerioua et al. 2012). To capitalize on these efforts to improve breadth and depth of NPD data access, this study uses a data-driven approach to assess NPD hydropower development opportunities in the United States. To help describe project feasibility drivers for NPDs, recent NPD retrofits were reviewed to examine variability with respect to a variety of characteristics. Based on the assessment of recent retrofits and data availability, several attributes were selected to characterize the remaining NPD population: (1) owner type, (2) 30% exceedance flow (a common design flow that describes the flow that is exceeded by 30% of the flow in the record), (3) hydraulic head, and (4) maximum reservoir storage. These four characteristics were used as inputs to a statistical clustering analysis (a common technique for grouping individuals of a population based on similarities or how closely associated individuals are to one another) of a set of 2,709 NPDs with at least 100 kW potential capacity and recently retrofit dams with available data. With the large dataset of NPDs, the clusters help describe how the population breaks down into different types (i.e., how many types of dams there are and what portion of the population belongs to each cluster).

13 HYDRO ENERGY↗

Millimeter Light Curves of Sagittarius A* Observed during the 2017 Event Horizon Telescope Campaign

The Event Horizon Telescope (EHT) observed the compact radio source, Sagittarius A* (Sgr A*), in the Galactic Center on 2017 April 5–11 in the 1.3 mm wavelength band. At the same time, interferometric array data from the Atacama Large Millimeter/submillimeter Array and the Submillimeter Array were collected, providing Sgr A* light curves simultaneous with the EHT observations. These data sets, complementing the EHT very long baseline interferometry, are characterized by a cadence and signal-to-noise ratio previously unattainable for Sgr A* at millimeter wavelengths, and they allow for the investigation of source variability on timescales as short as a minute. While most of the light curves correspond to a low variability state of Sgr A*, the April 11 observations follow an X-ray flare and exhibit strongly enhanced variability. All of the light curves are consistent with a red-noise process, with a power spectral density (PSD) slope measured to be between −2 and −3 on timescales between 1 minute and several hours. Our results indicate a steepening of the PSD slope for timescales shorter than 0.3 hr. The spectral energy distribution is flat at 220 GHz, and there are no time lags between the 213 and 229 GHz frequency bands, suggesting low optical depth for the event horizon scale source. We characterize Sgr A*’s variability, highlighting the different behavior observed just after the X-ray flare, and use Gaussian process modeling to extract a decorrelation timescale and a PSD slope. We also investigate the systematic calibration uncertainties by analyzing data from independent data reduction pipelines.

79 ASTRONOMY AND ASTROPHYSICS↗

FRAM Isotopic Analysis of High-Resolution CZT Data [Slides]

Abstract: H3D Inc. introduced a new type of CZT detectors with resolution several times better than that of a typical CZT; The current FRAM v.6.1 can analyze uranium spectra with minimal modification of the parameter sets and get acceptable results; The exceptionally large high-energy tail of the peaks makes it difficult to achieve good uranium results and impossible to successfully analyze plutonium spectra; The FRAM code needed to be modified to better fit the high-energy tail of the peaks to analyze plutonium data and to get better uranium analysis results.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗