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At least 505 records · Page 28

Optimal Estimation Framework for Ocean Color Atmospheric Correction and Pixel-level Uncertainty Quantification

Ocean color remote sensing requires compensation for atmospheric scattering and absorption (aerosol, Rayleigh, and trace gases), referred to as atmospheric correction (AC). AC allows inference of parameters such as spectrally resolved remote sensing reflectance ( R rs )(λ) ; sr 1 ) at the ocean surface from the top-of-atmosphere reflectance. Often, the uncertainty of this process is not fully explored. Bayesian inference techniques provide a simultaneous AC and uncertainty assessment via a full posterior distribution of the relevant variables, given the prior distribution of those variables and the radiative transfer (RT) likelihood function. Given uncertainties in the algorithm inputs, the Bayesian framework enables better constraints on the AC process by using the complete spectral information compared to traditional approaches that use only a subset of bands for AC. This paper investigates a Bayesian inference research method (Optimal Estimation, OE) for ocean color AC by simultaneously retrieving atmospheric and ocean properties using all visible and near-infrared spectral bands. The OE algorithm analytically approximates the posterior distribution of parameters based on normality assumptions and provides a potentially viable operational algorithm with a reduced computational expense. We developed a Neural Network (NN) RT forward model look-up-table-based emulator to increase algorithm efficiency further and thus speed up the likelihood computations. We then applied the OE algorithm to synthetic data and observations from the MODerate resolution Imaging Spectroradiometer (MODIS) on NASA’s Aqua spacecraft. We compared the R rs )(λ) retrieval and its uncertainty estimates from the OE method with in-situ validation data from the SeaWiFS Bio-optical Archive and Storage System (SeaBASS) and Aerosol Robotic Network Ocean Color (AERONET-OC) datasets. The OE algorithm improved R rs )(λ) estimates relative to the NASA standard operational algorithm by improving all statistical metrics at 443, 555, and 667 nm. Unphysical negative R rs )(λ) , which often appear in complex water conditions, was reduced by a factor of 3. The OE-derived pixel-level R rs )(λ) uncertainty estimates were also assessed relative to in-situ data and were shown to have skill.

Atmospheric correction↗

A Dynamic Nonlinear Subgrid-Scale Model for Large-Eddy Simulation of Complex Turbulent Flows

We present a new dynamic nonlinear subgrid-scale (SGS) model for large-eddy simulations (LES) and apply it to compute a flow involving pressure gradients, surface curvature and separation, for which data from a direct numerical simulation are available for comparison. The model, inspired by the triple model idea of Bardina et al. (“Improved Turbulence Models Based on Large Eddy Simulation of Homogeneous, Incompressible, Turbulent Flows,” Report No. TF-19, Thermosciences Division, Department of Mechanical Engineering, Stanford University, 1983), includes a Galilean-invariant term called the modified Leonard stress tensor, and two nonlinear terms comprised of the products of the strain-rate and rotation-rate tensors for an improved representation of the subgrid-scale dissipation, backscatter and anisotropy effects. The model does not employ any ad hoc averaging or clipping procedures, and does not require the specification of a characteristic length scale; hence, it naturally avoids the ambiguities associated with defining a proper length scale for anisotropic grids. Results from the wall-resolved LES of flow past a Gaussian bump using the new model demonstrate improved prediction of skin-friction, flow separation, mean flow profiles and turbulent quantities when compared to implicit LES as well as explicit LES using the Vreman SGS model on the same grid.

Turbulence↗

Developing a Genetic Variant Calling Pipeline for Quantifying the Complex Mutagenic Load Accumulated in BioNutrients-1 Production Pack Samples

Microorganisms hold great promise for on demand production of labile nutrients and pharmaceuticals as well recycling and in situ resource utilization. The utilization of microorganisms for such tasks on space missions is hindered by the limited data on how microbes respond to spaceflight. For example, the genetic stability of microorganisms, and the genomic engineered traits added to deliver desired functions, over long-term storage in the spacecraft environment is poorly understood. The BioNutrients-1 (BN-1) mission conducted a 5-year study of desiccated storage in Low Earth Orbit (LEO) to evaluate the suitability of eight synthetic biology chassis organisms for long-duration space missions. We are employing high-depth, whole genome sequencing (WGS) to determine the mutagenic load that accumulated during long-term storage. Mutation analysis pipelines are well established for homogenous culture grown from a single colony, but the mutational landscape of the BN-1 samples present a unique analysis challenge, as every cell in the BN-1 samples had a unique genetic journey of DNA damage and repair. Consequently, sequence variants are expected at low allele frequency within samples. To address this genetic complexity, we apply two distinct computational approaches to identify mutations in pre-existing WGS data collected from populations of Chlamydomonas reinhardtii that were exposed to UV mutagenesis and growth in LEO. For reference genome free mutation detection, we utilized DiscoSNP++, which is a de Bruijn graph approach. For reference genome-based mutation detection we utilize GATK for Microbes, which is a Bayesian probabilistic approach. We will benchmark these approaches against the mutations originally identified using CRISP, a method optimized for pooled samples. Ultimately, quantifying the mutation load imposed by storage or growth on the ISS will help identify chassis organisms with both high levels of genome stability and viability, which are desirable traits for implementation of bioproduction in long-duration missions.

SNP↗

An Optimization study on a hybrid computer

The maximum principle is applied to minimum-time optimal-control problems, and an optimization algorithm is presented which can be implemented on a hybrid computer. The state and adjoint equations are set up on ASTRAC 2, a high-speed analog computer capable of 1000 differential equation solutions per second. The optimization algorithm is implemented on a PDP-9, an 18-bit, digital computer. The optimization scheme has global and local search phases and uses a vector optimization criterion. Second and third-order bang-bang control systems are studied as examples.

Gonzalez, R. S.↗

Pseudo-random number generator for the Sigma 5 computer

A technique is presented for developing a pseudo-random number generator based on the linear congruential form. The two numbers used for the generator are a prime number and a corresponding primitive root, where the prime is the largest prime number that can be accurately represented on a particular computer. The primitive root is selected by applying Marsaglia's lattice test. The technique presented was applied to write a random number program for the Sigma 5 computer. The new program, named S:RANDOM1, is judged to be superior to the older program named S:RANDOM. For applications requiring several independent random number generators, a table is included showing several acceptable primitive roots. The technique and programs described can be applied to any computer having word length different from that of the Sigma 5.

Carroll, S. N.↗

Trends in computerized structural analysis and synthesis; Proceedings of the Symposium, Washington, D.C., October 30-November 1, 1978

The subjects considered are related to future directions of structural applications and potential of new computing systems, advances and trends in data management and engineering software development, advances in applied mathematics and symbolic computing, computer-aided instruction and interactive computer graphics, nonlinear analysis, dynamic analysis and transient response, structural synthesis, structural analysis and design systems, advanced structural applications, supercomputers, numerical analysis, and trends in software systems. Attention is given to the reliability and optimality of the finite element method, computerized symbolic manipulation in structural mechanics, a standard computer graphics subroutine package, and a drag method as a finite element mesh generation scheme.

Noor, A. K.↗

Growth Control and Disease Mechanisms in Computational Embryogeny

This paper presents novel approach to applying growth control and diseases mechanisms in computational embryogeny. Our method, which mimics fundamental processes from biology, enables individuals to reach maturity in a controlled process through a stochastic environment. Three different mechanisms were implemented; disease mechanisms, gene suppression, and thermodynamic balancing. This approach was integrated as part of a structural evolutionary model. The model evolved continuum 3-D structures which support an external load. By using these mechanisms we were able to evolve individuals that reached a fixed size limit through the growth process. The growth process was an integral part of the complete development process. The size of the individuals was determined purely by the evolutionary process where different individuals matured to different sizes. Individuals which evolved with these characteristics have been found to be very robust for supporting a wide range of external loads.

Genetic algorithm↗

Computational aeroacoustics of propeller noise in the near and far field

Techniques for applying the NASPROP-E computer code (Bober et al., 1983) to characterize the acoustic field of a transonic propfan are described and demonstrated for the case of the SR-3 propfan. It is pointed out that NASPROP E accounts for the nonlinear quadrupole, monopole, and dipole noise sources. The approach used, based on that of White (1984) and Korkan et al. (1985 and 1986), is described in detail, and the results of simulations employing different (reflective and nonreflective) inflow-outflow boundary conditions and azimuthal mesh spacings are presented in graphs and briefly discussed.

Forsyth, D. W.↗

Multi-processing on supercomputers for computational aerodynamics

The MIMD concept is applied, through multitasking, with relatively minor modifications to an existing code for a single processor. This approach maps the available memory to multiple processors, exploiting the C-FORTRAN-Unix interface. An existing single processor algorithm is mapped without the need for developing a new algorithm. The procedure of designing a code utilizing this approach is automated with the Unix stream editor. A Multiple Processor Multiple Grid (MPMG) code is developed as a demonstration of this approach. This code solves the three-dimensional, Reynolds-averaged, thin-layer and slender-layer Navier-Stokes equations with an implicit, approximately factored and diagonalized method. This solver is applied to a generic, oblique-wing aircraft problem on a four-processor computer using one process for data management and nonparallel computations and three processes for pseudotime advance on three different grid systems.

Yarrow, Maurice↗

Parallelization of a Six Degree of Freedom Entry Vehicle Trajectory Simulation Using OpenMP and OpenACC

The art and science of writing parallelized software, using methods such as Open Multi-Processing (OpenMP) and Open Accelerators (OpenACC), is dominated by computer scientists. Engineers and non-computer scientists looking to apply these techniques to their project applications face a steep learning curve, especially when looking to adapt their original single threaded software to run multi-threaded on graphics processing units (GPUs). There are significant changes in mindset that must occur; such as how to manage memory, the organization of instructions, and the use of if statements (also known as branching). The purpose of this work is twofold: 1) to demonstrate the applicability of parallelized coding methodologies, OpenMP and OpenACC, to tasks outside of the typical large scale matrix mathematics; and 2) to discuss, from an engineer’s perspective, the lessons learned from parallelizing software using these computer science techniques. This work applies OpenMP, on both multi-core central processing units (CPUs) and Intel® Xeon Phi™ 7210, and OpenACC on GPUs. These parallelization techniques are used to tackle the simulation of thousands of entry vehicle trajectories through the integration of six degree of freedom (DoF) equations of motion (EoM). The forces and moments acting on the entry vehicle, and used by the EoM, are estimated using multiple models of varying levels of complexity. Several benchmark comparisons are made on the execution of six DoF trajectory simulation: single thread Intel® Xeon® E5-2670 CPU, multi-thread CPU using OpenMP, multi-thread Xeon Phi™ 7210 using OpenMP, and multi-thread NVIDIA® Tesla® K40 GPU using OpenACC. These benchmarks are run on the Pleiades Supercomputer Cluster at the National Aeronautics and Space Administration (NASA) Ames Research Center (ARC), and a Xeon Phi™ 7210 node at NASA Langley Research Center (LaRC).

Green, Justin S.↗

The effects of magnetic nozzle configurations on plasma thrusters

Plasma thrusters have been operated at power levels from 10kW to 0.1MW. When these devices have had magnetic fields applied to them which form a nozzle configuration for the expanding plasma, they have shown marked increases in exhaust velocity which is in direct proportion to the magnitude of the applied field. Further, recent results have shown that electrode erosion may be influenced by applied magnetic fields. This research is directed to the experimental and computational study of the effects of applied magnetic field nozzles in the acceleration of plasma flows. Plasma source devices which eliminate the plasma interaction in normal thrusters are studied as most basic. Normal thruster configurations will be studied without applied fields and with applied magnetic nozzle fields. Unique computational studies will utilize existing codes which accurately include transport processes. Unique diagnostic studies will support the experimental studies to generate new data. Both computation and diagnostics will be combined to indicate the physical mechanisms and transport properties that are operative in order to allow scaling and accurate prediction of thruster performance.

York, Thomas M.↗

An automated procedure for material parameter evaluation for viscoplastic constitutive models

An automated procedure is presented for evaluating the material parameters in Walker's exponential viscoplastic constitutive model for metals at elevated temperature. Both physical and numerical approximations are utilized to compute the constants for Inconel 718 at 1100 F. When intermediate results are carefully scrutinized and engineering judgement applied, parameters may be computed which yield stress output histories that are in agreement with experimental results. A qualitative assessment of the theta-plot method for predicting the limiting value of stress is also presented. The procedure may also be used as a basis to develop evaluation schemes for other viscoplastic constitutive theories of this type.

Imbrie, P. K.↗

Development of a change management system

The complexity and interdependence of software on a computer system can create a situation where a solution to one problem causes failures in dependent software. In the computer industry, software problems arise and are often solved with 'quick and dirty' solutions. But in implementing these solutions, documentation about the solution or user notification of changes is often overlooked, and new problems are frequently introduced because of insufficient review or testing. These problems increase when numerous heterogeneous systems are involved. Because of this situation, a change management system plays an integral part in the maintenance of any multisystem computing environment. At the NASA Ames Advanced Computational Facility (ACF), the Online Change Management System (OCMS) was designed and developed to manage the changes being applied to its multivendor computing environment. This paper documents the research, design, and modifications that went into the development of this change management system (CMS).

Parks, Cathy Bonifas↗

Experimental Test Of Aerodynamic Computer Program

Linear potential-flow theory applied to advanced airplane design. Report discusses use of PANAIR computer program to predict airflow about advanced fighter aircraft. Predictions compared with measurements about scale model of aircraft in wind tunnel at mach numbers of 0.6, 0.9, and 1.2 and at angles-of-attack from 0 to 10 degree.

Madson, M. D.↗

Computing Blood Flows

Methods developed for aerospace applied to mechanics of biofluids. Report argues use of advanced computational fluid dynamics to analyze flows of biofluids - especially blood. Ability to simulate numerically and visualize complicated, time-varying three-dimensional flows contributes to understanding of phenomena in heart and blood vessels, offering potential for development of treatments for abnormal flow conditions.

Kwak, D.↗

The effects of magnetic nozzle configurations on plasma thrusters

Plasma thrusters have been operated at power levels from 10 kw to 0.1 MW. When these devices have had magnetic fields applied to them which form a nozzle configuration for the expanding plasma, they have shown marked increases in exhaust velocity which is in direct proportion to the magnitude of the applied field. Further, recent results have shown that electrode erosion may be influenced by applied magnetic fields. This research effort is directed to the experimental and computational study of the effects of applied magnetic field nozzles in the acceleration of plasma flows. Plasma source devices which eliminate the plasma interaction in normal thrusters are studied as most basic. Normal thruster configurations were studied without applied fields and with applied magnetic nozzle fields. Unique computational studies utilize existing codes which accurately include transport processes. Unique diagnostic studies supported the experimental studies to generate new data. Both computation and diagnostics were combined to indicate the physical mechanisms and transport properties that are operative in order to allow scaling and accurate prediction of thruster performance.

York, Thomas M.↗

Precise orbit computation for the Geosat Exact Repeat Mission

Results are reported from an extensive investigation of orbit-determination strategies for the Geosat Exact Repeat Mission (ERM). The goal is to establish optimum geodetic parameters and procedures for the computation of the most accurate Geosat orbits possible and to apply these procedures for routine computation during the ERM for the following purposes: (1) to enhance the value of the Geosat oceanographic investigations by providing the user community with improved ephemerides, (2) to develop orbit determination techniques for the upcoming altimetric mission Topex/Poseidon, and (3) to assess the radial orbit accuracy obtainable with recently developed gravity models. To this end, ephemerides for the entire first year of the ERM have been computed using the GEODYN II orbit program on the Cyber 205 supercomputer system at the NASA Goddard.

Haines, Bruce J.↗

High-temperature properties of gases

Computational chemistry is being applied at NASA Ames Research Center to a variety of problems in chemistry, physics, and materials sciences. Supercomputers and modern computational chemistry techniques have provided a powerful new tool to help fill NASA's continuing need for information about the properties of gases and materials as well as their interaction. For example, radiative transition probabilities, spectroscopic constants, bond dissociation energies, transport properties, and chemical reaction rates for molecules can be determined computationally just as reliably as by experiment. Recent results on the radiative transition probabilities of the strongly radiating systems of air species, based on state-of-the-art computational chemistry calculations, are presented and compared with experimental data.

Cooper, David M.↗