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All sourcesNASA NTRSDOE OSTI
NASA NTRS2008

Dependence of Adaptive Cross-correlation Algorithm Performance on the Extended Scene Image Quality

Recently, we reported an adaptive cross-correlation (ACC) algorithm to estimate with high accuracy the shift as large as several pixels between two extended-scene sub-images captured by a Shack-Hartmann wavefront sensor. It determines the positions of all extended-scene image cells relative to a reference cell in the same frame using an FFT-based iterative image-shifting algorithm. It works with both point-source spot images as well as extended scene images. We have demonstrated previously based on some measured images that the ACC algorithm can determine image shifts with as high an accuracy as 0.01 pixel for shifts as large 3 pixels, and yield similar results for both point source spot images and extended scene images. The shift estimate accuracy of the ACC algorithm depends on illumination level, background, and scene content in addition to the amount of the shift between two image cells. In this paper we investigate how the performance of the ACC algorithm depends on the quality and the frequency content of extended scene images captured by a Shack-Hatmann camera. We also compare the performance of the ACC algorithm with those of several other approaches, and introduce a failsafe criterion for the ACC algorithm-based extended scene Shack-Hatmann sensors.

wave-front sensing and control↗
NASA NTRS2015

A Semianalytical Ocean Color Inversion Algorithm with Explicit Water Column Depth and Substrate Reflectance Parameterization

A semianalytical ocean color inversion algorithm was developed for improving retrievals of inherent optical properties (IOPs) in optically shallow waters. In clear, geometrically shallow waters, light reflected off the seafloor can contribute to the water-leaving radiance signal. This can have a confounding effect on ocean color algorithms developed for optically deep waters, leading to an overestimation of IOPs. The algorithm described here, the Shallow Water Inversion Model (SWIM), uses pre-existing knowledge of bathymetry and benthic substrate brightness to account for optically shallow effects. SWIM was incorporated into the NASA Ocean Biology Processing Group's L2GEN code and tested in waters of the Great Barrier Reef, Australia, using the Moderate Resolution Imaging Spectroradiometer (MODIS) Aqua time series (2002-2013). SWIM-derived values of the total non-water absorption coefficient at 443 nm, at(443), the particulate backscattering coefficient at 443 nm, bbp(443), and the diffuse attenuation coefficient at 488 nm, Kd(488), were compared with values derived using the Generalized Inherent Optical Properties algorithm (GIOP) and the Quasi-Analytical Algorithm (QAA). The results indicated that in clear, optically shallow waters SWIM-derived values of at(443), bbp(443), and Kd(443) were realistically lower than values derived using GIOP and QAA, in agreement with radiative transfer modeling. This signified that the benthic reflectance correction was performing as expected. However, in more optically complex waters, SWIM had difficulty converging to a solution, a likely consequence of internal IOP parameterizations. Whilst a comprehensive study of the SWIM algorithm's behavior was conducted, further work is needed to validate the algorithm using in situ data.

Great Barrier Reef↗
NASA NTRS2014

An Efficient, Multi-Layered Crown Delineation Algorithm for Mapping Individual Tree Structure Across Multiple Ecosystems

Deriving individual tree information from discrete return, small footprint LiDAR data may improve forest above ground biomass estimates, and provide tree-level information that is important in many ecological studies. Several crown delineation algorithms have been developed to extract individual tree information from LiDAR point clouds or rasterized canopy height models (CHM), but many of these algorithms have difficulty discriminating between overlapping crowns, and also may fail to detect understory trees. Our approach uses a watershed based delineation of a CHM, which is subsequently refined using the LiDAR point cloud. Individual tree detection was validated with stem mapped field data from the Smithsonian Environmental Research Center (SERC), Maryland, and on a plot and stand level through comparisons of stem density and basal area to delineated metrics at both SERC and a study area in the Sierra Nevada, California. For individual tree detection, the algorithm correctly identified 70% of dominant trees, 58% of co-dominant trees, 35% of intermediate trees and 21% of suppressed trees at SERC. The algorithm had difficulty distinguishing between crowns of small, dense understory trees of approximately the same height. Delineated crown volume alone explained 53% and 84% of the variability in basal area at the SERC and Sierra Nevada sites, respectively. The algorithm produced crown area distributions comparable to diameter at breast height (DBH) size class distributions observed in the field in both study sites. The algorithm detected understory crowns better in the conifer-dominated Sierra Nevada site than in the closed-canopy deciduous site in Maryland. The ability for the algorithm to reproduce both accurate tree size distributions and individual crown geometries in two dissimilar and complex forests suggests great promise for applicability to a wide range of forest systems.

LiDAR↗
NASA NTRS2016

Exact and Heuristic Algorithms for Runway Scheduling

This paper explores the Single Runway Scheduling (SRS) problem with arrivals, departures, and crossing aircraft on the airport surface. Constraints for wake vortex separations, departure area navigation separations and departure time window restrictions are explicitly considered. The main objective of this research is to develop exact and heuristic based algorithms that can be used in real-time decision support tools for Air Traffic Control Tower (ATCT) controllers. The paper provides a multi-objective dynamic programming (DP) based algorithm that finds the exact solution to the SRS problem, but may prove unusable for application in real-time environment due to large computation times for moderate sized problems. We next propose a second algorithm that uses heuristics to restrict the search space for the DP based algorithm. A third algorithm based on a combination of insertion and local search (ILS) heuristics is then presented. Simulation conducted for the east side of Dallas/Fort Worth International Airport allows comparison of the three proposed algorithms and indicates that the ILS algorithm performs favorably in its ability to find efficient solutions and its computation times.

safe & surface operations↗
NASA NTRS2020

The Precipitation Rate Retrieval Algorithms for the GPM Dual-frequency Precipitation Radar

In this paper, precipitation rate retrieval algorithms for the Global Precipitation Measurement mission's Dual-frequency Precipitation Radar (DPR) are developed. The DPR consists of a Ku-band radar (KuPR; 13.6 GHz) and a Ka-band radar (KaPR; 35.5 GHz). For the KuPR, an algorithm similar to the Tropical Rainfall Measuring Mission's Precipitation Radar algorithm is developed, with the relation between precipitation rate R and massweighted mean diameter D m (R−D m relation) replacing the relation between the specific attenuation k and effective radar reflectivity factor Z e . The R−D m relation can also be applied to the KaPR and dual-frequency algorithms. In both the single-frequency and dual-frequency algorithms, the forward retrieval method is applied with an assumed adjustment factor for the R−D m relation (ε) and the results are evaluated to select the best value of ε. The advantages of the dual-frequency algorithm are the availability of the dual-frequency surface reference technique and the ZfKa method, which is a method to use the attenuation-corrected radar reflectivity factor Z f of KaPR, to select ε as well as the possibility to selectively use measurements from KuPR or KaPR. This paper also describes the derivation of the scattering table and the R−D m relation as well as the procedure for non-uniform beam filling correction in detail. The outputs are then statistically analyzed to demonstrate algorithm performance.

precipitation radar↗
NASA NTRS2023

The Calipso Version 4.5 Stratospheric Aerosol Subtyping Algorithm

The accurate classification of aerosol types injected into the stratosphere is important to properly characterize their chemical and radiative impacts within the Earth climate system. The updated stratospheric aerosol subtyping algorithm used in the version 4.5 (V4.5) release of the Cloud Aerosol Lidar with Orthogonal Polarization (CALIOP) level 2 data products now delivers more comprehensive and accurate classifications than its predecessor. The original algorithm identified four aerosol subtypes for layers detected above the tropopause: volcanic ash, smoke, sulfate/other, and polar stratospheric aerosol (PSA). In the revised algorithm, sulfates are separately identified as a distinct, homogeneous subtype, and the diffuse, weakly scattering layers previously assigned to the sulfate/other class are recategorized as a fifth “unclassified” subtype. By making two structural changes to the algorithm and revising two thresholds, the V4.5 algorithm improves the ability to discriminate between volcanic ash and smoke from pyrocumulonimbus injections, improves the fidelity of the sulfate subtype, and more accurately reflects the uncertainties inherent in the classification process. The 532 nm lidar ratio for volcanic ash was also revised to a value more consistent with the current state of knowledge. This paper briefly reviews the previous version of the algorithm (V4.1 and V4.2) then fully details the rationale and impact of the V4.5 changes on subtype classification frequency for specific events where the dominant aerosol type is known based on the literature. Classification accuracy is best for volcanic ash due to its characteristically high depolarization ratio. Smoke layers in the stratosphere are also classified with reasonable accuracy, though during the daytime a substantial fraction are misclassified as ash. It is also possible for mixtures of ash and sulfate to be misclassified as smoke. The V4.5 sulfate subtype accuracy is less than that for ash or smoke, with sulfates being misclassified as smoke about one-third of the time. However, because exceptionally tenuous layers are now assigned to the unclassified subtype and the revised algorithm levies more stringent criteria for identifying an aerosol as sulfate, it is more likely that layers labeled as this subtype are in fact sulfate compared to those assigned the sulfate/other classification in the previous data release.

Jason L Tackett↗
NASA NTRSDate not supplied

Development of Radiative Transfer Models and Retrieval Algorithms for Satellite Remote Sensors

Hyperspectral IR sounders such as AIRS on Aqua, CrIS on S-NPP, NOAA20 and JPSS-2, IASI on Metop A, B, and C provide high-quality atmospheric temperature, water, vapor, and greenhouse gas vertical profiles. Additionally, they provide atmospheric cloud properties, surface emissivity, and surface skin temperatures. We have developed two algorithms which can consistently derive these products from multiple IR sounders. The first one is a Single Field-of-view Sounder Atmospheric Product (SIFSAP) algorithm and the second one is a Climate Fingerprinting Sounder Product (ClimFiSP) algorithm. The SiFSAP algorithm performs one retrieval for each FOV using an all-sky optimal estimation approach. The core of the SiFSAP algorithm is an accurate and fast Principal Component-based Radiative Transfer Model (PCRTM), which can calculate hyperspectral radiance spectra under both clear and cloudy conditions. The PCRTM was developed in the past decade using consistent reference line-by-line radiative transfer model and spectroscopy for hyperspectral sounders such as AIRS, CrIS, IASI, NAST-I, and S-HIS. The ClimFiSP algorithm, which performs retrievals from spatiotemporally averaged L1 hyperspectral radiances directly, will be orders of magnitude faster than traditional method. he ClimFiSP algorithm uses consistent radiative kernels and a robust spectral fingerprinting method. It provides accurate data climate data fusion products from multiple satellite sensors. Both SiFSAP and ClimFiSP will be available at NASA GES DISC data center for public access.

Xu Liu↗
NASA NTRSDate not supplied

Latest Development in Radiative Transfer Models and Retrieval Algorithms Using Principal Components

The radiative transfer model (RTMs) has a wide range of applications in satellite remote sensing and atmospheric radiation applications. However, millions of line-by-line (LBL) radiative transfer calculations at fine monochromatic frequencies are needed in order to properly calculate spectral contributions of water vapor and trace gases in the atmosphere in infrared and solar spectral regions. Therefore, fast and accurate RTMs are needed to efficiently process large amount of satellite data. A Principal Component-based Radiative Transfer Model (PCRTM) was first developed in 2004 at NASA Langley Research Centre to fulfil this need. By using PC-compression, one can reduce the data dimension significantly while maintaining original information content. The PCRTM can directly compute PC-scores and their derivatives with respect to retrieved parameters. The PCRTM can simulate the top-of-atmosphere (TOA) radiance or reflectance spectra from 0.250 µm (400000 cm-1) to 2000 µm (50 cm-1) with several orders of magnitude faster speed as compared to a LBL RTM. It is also extremely accurate compared to LBL RTM benchmarks (0.03 K RMS error in IR and 0.05% in solar). The PCRTM model has been developed for hyperspectral sensors such as AIRS, CrIS, IASI, NAST-I, SHIS, FIRST, and CLARREO-IR in thermal IR spectral region and CLARREO-Solar, CPF, TEMPO, EMIT, OMI, and SCIAMACHY in solar spectral region. The PCRTM accuracy has been demonstrated via RTM intercomparisons and with real satellite observations from AIRS, CrIS, IASI, SCHIAMACHY, and EMIT etc. In this presentation, we will describe two PCRTM-based inversion algorithms to retrieve atmospheric temperature, water vapor, and trace gas profiles, as well as cloud and surface properties from hyperspectral sounders such as AIRS, CrIS, IASI, and NAST-I. The first one is called Single Fieldof-view Sounder Atmospheric Product (SiFSAP) algorithm. It provides L2 products with 9-times higher area spatial resolution as compared to current cloud-clearing sounder algorithms. The SiFSAP L2 and L3 products are available at NASA's Goddard Earth Sciences Data and Information Services Center (GES DISC) for public access. The second inversion algorithm is called Climate Fingerprinting Atmospheric Product (ClimFiSP) algorithm. It is designed to produce high quality climate products (trends, anomalies, daily, and monthly profiles of temperature, water vapor, traces, clouds, and surface properties) from multiple satellite sensors such AIRS on Aqua and CrIS on multiple satellites. This product will be available at NASA GES DISC later this year. The PCRTMbased high fidelity simulators for CLARREO and CPF have been used for sensor performance trade studies, algorithm development, and inter-satellite calibrations. We have also used PCRTM generated TOA radiance spectra to train an AI-based algorithm and successfully retrieved cloud properties from EMIT solar hyperspectral imagers.

PCRTM↗
DOE OSTI2014

An Adaptive Unified Differential Evolution Algorithm for Global Optimization

In this paper, we propose a new adaptive unified differential evolution algorithm for single-objective global optimization. Instead of the multiple mutation strate- gies proposed in conventional differential evolution algorithms, this algorithm employs a single equation unifying multiple strategies into one expression. It has the virtue of mathematical simplicity and also provides users the flexibility for broader exploration of the space of mutation operators. By making all control parameters in the proposed algorithm self-adaptively evolve during the process of optimization, it frees the application users from the burden of choosing appro- priate control parameters and also improves the performance of the algorithm. In numerical tests using thirteen basic unimodal and multimodal functions, the proposed adaptive unified algorithm shows promising performance in compari- son to several conventional differential evolution algorithms.

43 PARTICLE ACCELERATORS↗
DOE OSTI2018

A distributed-memory approximation algorithm for maximum weight perfect bipartite matching

We design and implement an efficient parallel approximation algorithm for the problem of maximum weight perfect matching in bipartite graphs, i.e. the problem of finding a set of non-adjacent edges that covers all vertices and has maximum weight. This problem differs from the maximum weight matching problem, for which scalable approximation algorithms are known. It is primarily motivated by finding good pivots in scalable sparse direct solvers before factorization where sequential implementations of maximum weight perfect matching algorithms, such as those available in MC64, are widely used due to the lack of scalable alternatives. To overcome this limitation, we propose a fully parallel distributed memory algorithm that first generates a perfect matching and then searches for weightaugmenting cycles of length four in parallel and iteratively augments the matching with a vertex disjoint set of such cycles. For most practical problems the weights of the perfect matchings generated by our algorithm are very close to the optimum. An efficient implementation of the algorithm scales up to 256 nodes (17,408 cores) on a Cray XC40 supercomputer and can solve instances that are too large to be handled by a single node using the sequential algorithm.

Azad, Ariful↗
DOE OSTI2022

NWGraph: A Library of Generic Graph Algorithms and Data Structures in C++20

The C++ Standard Library is a valuable collection of generic algorithms and data structures that improves the usability and reliability of C++ software. Graph algorithms and data structures are notably absent from the standard library, and previous attempts to fill this gap have not gained widespread adoption. In this paper we show that the richness of graph algorithms and data structures can in fact be captured by straightforward composition of existing C++ mechanisms. Generic programming is algorithm-oriented. Accordingly, we apply a systematic approach to analyzing a broad set of graph algorithms, “lift” unnecessary constraints from them, and organize the resulting set of minimal common type requirements, i.e., concepts, for defining their interfaces. By using the newly available ranges and concepts in C++20, the type requirements for generic graph algorithms can be succinctly expressed. The generic algorithms and data structures resulting from our analysis are realized in NWGraph, in a modern, composable, and extensible C++ library.

graphs and networks, programming language, C++20↗
DOE OSTI2022

Snowmass Computational Frontier: Topical Group Report on Experimental Algorithm Parallelization

The substantial increase in data volume and complexity expected from future experiments will require significant investment to prepare experimental algorithms. These algorithms include physics object reconstruction, calibrations, and processing of observational data. In addition, the changing computing architecture landscape, which will be primarily composed of heterogeneous resources, will continue to pose major challenges with regard to algorithmic migration. Portable tools need to be developed that can be shared among the frontiers (e.g., for code execution on different platforms) and opportunities, such as forums or cross-experimental working groups, need to be provided where experiences and lessons learned can be shared between experiments and frontiers. At the same time, individual experiments also need to invest considerable resources to develop algorithms unique to their needs (e.g., for facilities dedicated to the experiment), and ensure that their specific algorithms will be able to efficiently exploit external heterogeneous computing facilities. Common software tools represent a cost-effective solution, providing ready-to-use software solutions as well as a platform for R&D work. These are particularly important for small experiments which typically do not have dedicated resources needed to face the challenges imposed by the evolving computing technologies. Workforce development is a key concern across frontiers and experiments, and additional support is needed to provide career opportunities for researchers working in the field of experimental algorithm development. Finally, cross-discipline collaborations going beyond high-energy physics are a key ingredient to address the challenges ahead and more support for such collaborations needs to be created. This report targets future experiments, observations and experimental algorithm development for the next 10-15 years.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
NASA NTRS2009

Comparison of GOES Cloud Classification Algorithms Employing Explicit and Implicit Physics

Cloud-type classification based on multispectral satellite imagery data has been widely researched and demonstrated to be useful for distinguishing a variety of classes using a wide range of methods. The research described here is a comparison of the classifier output from two very different algorithms applied to Geostationary Operational Environmental Satellite (GOES) data over the course of one year. The first algorithm employs spectral channel thresholding and additional physically based tests. The second algorithm was developed through a supervised learning method with characteristic features of expertly labeled image samples used as training data for a 1-nearest-neighbor classification. The latter's ability to identify classes is also based in physics, but those relationships are embedded implicitly within the algorithm. A pixel-to-pixel comparison analysis was done for hourly daytime scenes within a region in the northeastern Pacific Ocean. Considerable agreement was found in this analysis, with many of the mismatches or disagreements providing insight to the strengths and limitations of each classifier. Depending upon user needs, a rule-based or other postprocessing system that combines the output from the two algorithms could provide the most reliable cloud-type classification.

EXPLICIT PHYSICS ALGORITHMS↗
DOE OSTI2019

Application of a Metal Artifact Reduction Algorithm for C-Arm Cone-Beam CT: Impact on Image Quality and Diagnostic Confidence for Bronchial Artery Embolization

Objective: The objective of this study was to evaluate the potential benefit of a dedicated cone-beam-CT streak metal artifact removal technique (SMART) in terms of both image quality and diagnostic confidence in patients undergoing bronchial artery embolization. Methods: A total of 17 patients were included in this retrospective study. The SMART algorithm was applied to images containing streak artifacts generated by a radiopaque intra-arterial catheter tip. Quantitative evaluation of artifact severity was performed via measurement of the Hounsfield units along a closed loop surrounding the catheter tip and was conducted in the frequency domain following the application of the discrete Fourier transform to the measured data. A high proportion of power in the low frequencies of the resulting spectrum indicated a high level of streak artifacts. Qualitative evaluation of diagnostic confidence was performed using a 4-point Likert scale. Results: Both quantitative and qualitative evaluation demonstrated a significant reduction in artifact severity using the SMART algorithm. Quantitative evaluation demonstrated a mean artifact reduction of 22.5% using SMART compared to non-SMART images (p < 0.001). Qualitative evaluation demonstrated the greatest artifact reduction at the inner and outer aortic curvature, as well as immediately surrounding the tip of the catheter. In 6 of 17 cases, the use of the SMART algorithm yielded additional clinical information, increasing mean diagnostic confidence from 3.17 to 3.78 (p < 0.001). Conclusion: The SMART algorithm allows for efficient reduction of metal artifacts introduced by radiopaque catheter tips during cone-beam CT. Using this algorithm, diagnostic images of the aortic arch were significantly improved both quantitatively and qualitatively, yielding clinically relevant levels of enhanced diagnostic confidence. These results demonstrate that the SMART algorithm improves diagnostic and clinical characterization of the course of bronchial arteries on CBCT images, potentially improving the accuracy and clinical efficacy of bronchial artery embolization. Level of Evidence: 3.

62 RADIOLOGY AND NUCLEAR MEDICINE↗
DOE OSTI2018

Integrating Natural Language Processing and Machine Learning Algorithms to Categorize Oncologic Response in Radiology Reports

A significant volume of medical data remains unstructured. Natural language processing (NLP) and machine learning (ML) techniques have shown to successfully extract insights from radiology reports. However, the codependent effects of NLP and ML in this context have not been well-studied. Between April 1, 2015 and November 1, 2016, 9418 cross-sectional abdomen/pelvis CT and MR examinations containing our internal structured reporting element for cancer were separated into four categories: Progression, Stable Disease, Improvement, or No Cancer. We combined each of three NLP techniques with five ML algorithms to predict the assigned label using the unstructured report text and compared the performance of each combination. The three NLP algorithms included term frequency-inverse document frequency (TF-IDF), term frequency weighting (TF), and 16-bit feature hashing. The ML algorithms included logistic regression (LR), random decision forest (RDF), one-vs-all support vector machine (SVM), one-vs-all Bayes point machine (BPM), and fully connected neural network (NN). The best-performing NLP model consisted of tokenized unigrams and bigrams with TF-IDF. Increasing N-gram length yielded little to no added benefit for most ML algorithms. With all parameters optimized, SVM had the best performance on the test dataset, with 90.6 average accuracy and F score of 0.813. The interplay between ML and NLP algorithms and their effect on interpretation accuracy is complex. The best accuracy is achieved when both algorithms are optimized concurrently.

62 RADIOLOGY AND NUCLEAR MEDICINE↗
DOE OSTI2018

Evolutionary computation algorithms to coordinating order acceptance and batch delivery for an integrated supply chain scheduling

This paper proposes a novel approach of coordinating decisions in an integrated supply chain (ISC): coordinating order acceptance (OA) and batch delivery (BD) due to round trip transportation (RTT) and using third-party logistics (3PL) vehicles. The paper aims at trading off among accepted orders revenue, delivery costs as well as any penalties incurred in the ISC to maximize the total benefit. A novel mixed-integer programming is proposed for the problem. In addition, the paper provides a heuristic to form batches and develops a hybrid evolutionary computation algorithms based on particle swarm optimization (PSO) and genetic algorithm (GA) to solve the problem. An information sharing mechanism is improved and applied. To explore and to locate the proposed PSO in a better neighborhood, a local search is proposed. Taguchi experimental design is utilized to set the appropriate values of the algorithms’ parameters and random instances are generated to evaluate the performance of the algorithms. The paper investigates the profitability sensitivity of the problem to parameters and analyzes the effect of the changes in the parameters on the performance of our proposed algorithms. The attained results show the appropriate performance of our algorithms.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2018

An active-set algorithm and a trust-region approach in constrained minimax problem

In this paper, we propose an algorithm to solve a finite minimax problem with side constraints. An active-set strategy is used in the algorithm to transform inequality constraints to equality constraints. This allows the use of the well-developed techniques for solving the equality constrained optimization problems. A trust-region globalization strategy is added to the proposed algorithm to ensure global convergence. A projected Hessian technique is used in the algorithm to overcome the difficulty of having an infeasible trust-region subproblem.A global convergence theory for the proposed algorithm is presented under standard assumptions. Finally, numerical experiments are reported to indicate that the new algorithm performs efficiently in practice.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2018

Numerical study of a smoothing algorithm for the complementarity system over the second-order cone

This paper deals with the complementarity system over the second-order cone (denoted by CSSOC) which contains a wide class of problems. We extend a class of regularized Chen–Harker–Kanzow–Smale smoothing functions studied by Huang and Sun (Appl Math Optim 52:237–262, 2005) for the linear complementarity problem to the CSSOC. Based on this class of functions, we propose a smoothing algorithm for solving the CSSOC. Under weak assumptions, we prove that the proposed algorithm has global and local quadratic convergence. The proposed algorithm is different from existing smoothing algorithms for solving the CSSOC because it adopts a new nonmonotone line search rule. In addition, our algorithm solves a new equation reformulation of the CSSOC. Numerical experiments indicate that the proposed algorithm is quite effective.

97 MATHEMATICS AND COMPUTING↗