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At least 505 records · Page 28
All sourcesNASA NTRSDOE OSTI
DOE OSTI2022

SNAPSHOT USA 2020: A second coordinated national camera trap survey of the United States during the COVID-19 pandemic

Managing wildlife populations in the face of global change requires regular data on the abundance and distribution of wild animals, but acquiring these over appropriate spatial scales in a sustainable way has proven challenging. Here, in this study, we present the data from Snapshot USA 2020, a second annual national mammal survey of the USA. This project involved 152 scientists setting camera traps in a standardized protocol at 1485 locations across 103 arrays in 43 states for a total of 52,710 trap-nights of survey effort. Most (58) of these arrays were also sampled during the same months (September and October) in 2019, providing a direct comparison of animal populations in 2 years that includes data from both during and before the COVID-19 pandemic. All data were managed by the eMammal system, with all species identifications checked by at least two reviewers. In total, we recorded 117,415 detections of 78 species of wild mammals, 9236 detections of at least 43 species of birds, 15,851 detections of six domestic animals and 23,825 detections of humans or their vehicles. Spatial differences across arrays explained more variation in the relative abundance than temporal variation across years for all 38 species modeled, although there are examples of significant site-level differences among years for many species. Temporal results show how species allocate their time and can be used to study species interactions, including between humans and wildlife. These data provide a snapshot of the mammal community of the USA for 2020 and will be useful for exploring the drivers of spatial and temporal changes in relative abundance and distribution, and the impacts of species interactions on daily activity patterns. There are no copyright restrictions, and please cite this paper when using these data, or a subset of these data, for publication.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2024

How do Management Goals for Wild Chinook Salmon Align with Feasibility?

Evaluation of goals is crucial for effective management to conserve viable and diverse fish populations and to support harvest. Management of wild Chinook Salmon Oncorhynchus tshawytscha in the Snake River basin exemplifies the struggle to meet fisheries goals. Considering contemporary production of juvenile emigrants, it is imperative to determine the survival from emigration to adult ( S e‐a ) required to meet abundance goals. Increased anthropogenic impact on spawning and rearing habitats leads to higher S e‐a required to attain goals. Wilderness populations exhibit viability and could sustain fisheries with S e‐a lower than required elsewhere. Conversely, populations targeted for habitat restoration demand higher S e‐a to fulfill goals, indicating a need to enhance egg‐to‐smolt survival. However, S e‐a has fallen below the threshold needed for replacement in all populations, even at current low abundances. Despite these challenges, most populations still possess the potential to achieve abundance goals, emphasizing the importance of strategic interventions to bolster their resilience.

Copeland, Timothy↗
DOE OSTI2025

Evaluating sulfurization as a blue carbon sink in a southern California salt marsh

Blue carbon ecosystems such as seagrass meadows, mangrove forests, and salt marshes are important carbon sinks that can store carbon for millennia. Recently, organic matter sulfurization and pyritization have been proposed as mechanisms of net carbon storage in blue carbon ecosystems. At our study site, organic sulfur that is resistant to acid hydrolysis (protokerogen) is an order of magnitude less abundant than pyrite sulfur, suggesting a dominance of pyritization over sulfurization. The C/N ratios and carbon isotope compositions suggest that nearly half of total organic carbon and ≥ 80% of protokerogen is composed of marsh plant material. Sediment protokerogen appears to be sulfurized based on its low δ 34 S values (− 10‰), abundance of disulfides, and higher S/C ratio (~ 1.0%) relative to potential biogenic sulfur sources. However, the interpretation of protokerogen δ 34 S values is complicated by the wide range in sulfur isotope compositions of marsh plants. Evidence for sulfurization occurs within the shallowest sediments across different vegetation zones, yielding consistent products, while pyritization appears to be more sensitive to alterations in sediment redox conditions. Based on organic sulfur and pyrite content, sulfurization may be a more spatially consistent process than pyritization, with implications for carbon storage. The relative abundance of pyrite and protokerogen organic sulfur indicates that pyritization is favored at our study site, but this is likely to vary across the spectrum of blue carbon ecosystems.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2023

Assessing mechanisms for microbial taxa and community dynamics using process models

Disentangling the assembly mechanisms controlling community composition, structure, distribution, functions, and dynamics is a central issue in ecology. Although various approaches have been proposed to examine community assembly mechanisms, quantitative characterization is challenging, particularly in microbial ecology. Here, we present a novel approach for quantitatively delineating community assembly mechanisms by combining the consumer–resource model with a neutral model in stochastic differential equations. Using time-series data from anaerobic bioreactors that target microbial 16S rRNA genes, we tested the applicability of three ecological models: the consumer–resource model, the neutral model, and the combined model. Our results revealed that model performances varied substantially as a function of population abundance and/or process conditions. The combined model performed best for abundant taxa in the treatment bioreactors where process conditions were manipulated. In contrast, the neutral model showed the best performance for rare taxa. Our analysis further indicated that immigration rates decreased with taxa abundance and competitions between taxa were strongly correlated with phylogeny, but within a certain phylogenetic distance only. The determinism underlying taxa and community dynamics were quantitatively assessed, showing greater determinism in the treatment bioreactors that aligned with the subsequent abnormal system functioning. Given its mechanistic basis, the framework developed here is expected to be potentially applicable beyond microbial ecology.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2020

Understanding Life History Diversity of a Wild Steelhead Population and Managing for Resiliency

Abstract Diversity in steelhead Oncorhynchus mykiss (anadromous Rainbow Trout) is often characterized by varying time spent in freshwater and saltwater environments. However, ontogenetic shifts are not often highlighted as an important diversity characteristic in salmonids. Larger water bodies can play a key role in population stability by buffering limited resources in smaller tributary systems. Based on freshwater and saltwater ages of adult steelhead in Fish Creek, Idaho, there were 12 different life history trajectories observed. Juvenile abundance varied from 12,083 (SE = 1,225.7) to 62,463 (SE = 1,753.8), with ages ranging from young of the year (age 0) to 4 years. Adult abundance fluctuated from 17 (SE < 0.1) to 499 (SE = 67.1), and total age of adults varied from 3 to 7 years. Diversity was most evident in juvenile movement and rearing strategies. We observed four types of movement and rearing pathways in which juveniles either directly migrated to the ocean from Fish Creek or resided for up to three winters in main-stem river habitat in the Clearwater River basin prior to ocean migration. Most juveniles emigrated in the fall at age 2, and most ocean-emigrating smolts were age 3. Subsequently, most juveniles resided for at least one additional winter period before ocean migration. Juvenile diversity was also reflected in adult ages; the mean proportion that spent 3 years in freshwater was 0.55 (SE = 0.03), and the mean proportion that spent 2 years in freshwater was 0.41 (SE = 0.03). Adult sex ratio was female biased (mean ± SE = 0.66 ± 0.02), with a higher proportion of females (0.89 ± 0.03) than males (0.65 ± 0.05) residing in the ocean for at least 2 years. Density-dependent mechanisms were evident in juvenile rearing habitat in Fish Creek for cohorts of high female abundance. Population productivity potentials can be met when tributary and main-stem rearing habitat can be utilized, and this will be essential in attaining recovery goals.

Dobos, Marika E.↗
DOE OSTI2021

Characteristics of an Introduced Walleye Population with Implications for Suppression

Abstract The management of introduced fishes, including Walleye Sander vitreus, whether for control or enhancement, requires understanding of population dynamics at the invasion front. Walleye recently established in the Pend Oreille basin, Idaho, threaten the existing salmonid-based fish community and associated recreational fishery. Therefore, the objectives of this study were to describe population growth and associated life history characteristics. Walleye were sampled in October of 2011, 2014, and 2017 using a standardized gill netting survey protocol to describe trends in relative abundance and evaluate population dynamics. Relative abundance increased exponentially from 1.4 to 4.3 fish/net over the 6-year monitoring period. This population was characterized by fast somatic growth, robust body condition, and early age at maturity at or near the biological maxima for Walleye. Among the survey years, mean length at age 2 varied for female (359–441 mm) and male (358–426 mm) Walleye and relative weight varied from 91 to 98. The sampled Walleye matured at 1 to 4 years of age, and recruitment became more consistent as abundance increased. These density-dependent metrics suggest that the Walleye population is still at low density relative to carrying capacity. The information that was gained from this study was used to better understand potential risks and guide management decisions related to experimental population suppression that is now underway. Suppression under these conditions must overcome the recruitment capabilities of the population. We conclude that natural mortality is likely regulated by density-dependent processes. Therefore, at current (low) density, fishing mortality may be entirely additive and compensation is unlikely to further complicate management.

Ryan, Robert G.↗
DOE OSTI2023

Axion dark matter from frictional misalignment

We study the impact of sphaleron-induced thermal friction on the axion dark-matter abundance due to the interaction of an axion-like particle (ALP) with a dark non-abelian gauge sector in a secluded thermal bath. Thermal friction can either enhance the axion relic density by delaying the onset of oscillations or suppress it by damping them. We derive an analytical formula for the frictional adiabatic invariant, which remains constant along the axion evolution and which allows us to compute the axion relic density in a general set-up. Even in the most minimal scenario, in which a single gauge group is responsible for both the generation of the ALP mass and the friction force, we find that the resulting dark-matter abundance from the misalignment mechanism deviates from the standard scenario for axion masses m a ≳ 100 eV. We also generalize our analysis to the case where the gauge field that induces friction and the gauge sector responsible for the ALP mass are distinct and their couplings to the axion have a large hierarchy as can be justified by means of alignment or clockwork scenarios. We find that it is easy to open up the ALP parameter space where the resulting axion abundance matches the observed dark-matter relic density both in the traditionally over- and underabundant regimes. This conclusion also holds for the QCD axion.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2022

Dark freeze-out cogenesis

We propose a new mechanism where a multi-component dark sector generates the observed dark matter abundance and baryon asymmetry and thus addresses the coincidence between the two. The thermal freeze-out of dark matter annihilating into meta-stable dark partners sets the dark matter relic abundance while providing the out-of-equilibrium condition for baryogenesis. The meta-stable state triggers baryon asymmetry production by its decay well after the freeze-out and potentially induces a period of early matter domination before its decay. The dark matter and baryon abundances are related through number conservation within the dark sector (cogenesis). The “coincidence” is a natural outcome with GeV- to TeV-scale symmetric dark matter and the dark sector’s interactions with the Standard Model quarks. We present a UV-complete model and explore its phenomenological predictions, including dark matter direct detection signals, LHC signatures of new massive particles with color charges and long-lived particles with displaced vertices, dark matter-induced nucleon conversions, (exotic) dark matter indirect detection signals, and effects on the cosmological matter power spectrum. As a side result, we provide a novel analytical treatment for dark sector freeze-out, which may prove useful in the study of related scenarios.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2022

Glueballs in a thermal squeezeout model

It has been shown that a first order confinement phase transition can drastically change the relic dark matter abundance in confining dark sectors with only heavy dark quarks. We study the phenomenology of one such model with a Z' portal to Standard Model. We find that dark glueballs are long-lived in this setup and dilute the dark matter abundance after their decay to Standard Model. With this effect, the correct relic abundance is obtained with dark matter masses up to O(10 6 ) TeV. We find that while a part of the parameter space is already ruled out by direct detection and collider searches, there is still a broad space of viable scenarios that can be probed by future experiments.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2024

A light QCD axion with hilltop misalignment

We study the cosmological evolution of a light QCD axion and identify the parameter space to obtain the correct relic dark matter abundance. The axion potential is flattened at the origin, corresponding to the only minimum, while it is unsuppressed at π. These potential features arise by assuming a mirror sector with the strong CP phase $\overline{θ}$ shifted by π compared to the SM sector, which allows the mirror axion potential to be tuned against the usual QCD axion potential. Before the QCD phase transition, assuming the mirror sector is decoupled and much colder than the SM thermal bath, the mirror sector potential dominates, causing the axion to initially roll to a temporary minimum at π. However, after the QCD phase transition, the potential minimum changes, and the axion relaxes from the newly created “hilltop” near π to the CP-conserving minimum at the origin. As the axion adiabatically tracks this shift in the potential minimum through the QCD phase transition, with non-adiabatic evolution near π and 0, it alters the usual prediction of the dark matter abundance. Consequently, this “hilltop” misalignment mechanism opens new regions of axion parameter space, with the correct relic abundance while still solving the strong CP problem, that could be explored in future experiments.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2020

Phenomenology of magnetic black holes with electroweak-symmetric coronas

Magnetically charged black holes (MBHs) are interesting solutions of the Standard Model and general relativity. They may possess a “hairy” electroweak-symmetric corona outside the event horizon, which speeds up their Hawking radiation and leads them to become nearly extremal on short timescales. Their masses could range from the Planck scale up to the Earth mass. We study various methods to search for primordially produced MBHs and estimate the upper limits on their abundance. We revisit the Parker bound on magnetic monopoles and show that it can be extended by several orders of magnitude using the large-scale coherent magnetic fields in Andromeda. This sets a mass-independent constraint that MBHs have an abundance less than 4 × 10 -4 times that of dark matter. MBHs can also be captured in astrophysical systems like the Sun, the Earth, or neutron stars. There, they can become non-extremal either from merging with an oppositely charged MBH or absorbing nucleons. The resulting Hawking radiation can be detected as neutrinos, photons, or heat. High-energy neutrino searches in particular can set a stronger bound than the Parker bound for some MBH masses, down to an abundance 10 -7 of dark matter.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2022

Origin of nontopological soliton dark matter: solitosynthesis or phase transition

This work demonstrates that nontopological solitons with large global charges and masses, even above the Planck scale, can form in the early universe and dominate the dark matter abundance. In solitosynthesis, solitons prefer to grow as large as possible under equilibrium dynamics when an initial global charge asymmetry is present. Their abundance is set by when soliton formation via particle fusion freezes out, and their charges are set by the time it takes to accumulate free particles. This work improves the estimation of both quantities, and in particular shows that much larger-charged solitons form than previously thought. The results are estimated analytically and validated numerically by solving the coupled Boltzmann equations. Without solitosynthesis, phase transitions can still form solitons from particles left inside false-vacuum pockets and determine their present-day abundance and properties. Even with zero charge asymmetry, solitons formed in this way can have very large charges on account of statistical fluctuations in the numbers of (anti)particles inside each pocket.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2020

Hidden sector monopole dark matter with matter domination

The thermal freeze-out mechanism for relic dark matter heavier than O (10 – 100 TeV) requires cross-sections that violate perturbative unitarity. Yet the existence of dark matter heavier than these scales is certainly plausible from a particle physics perspective, pointing to the need for a non-thermal cosmological history for such theories. Topological dark matter is a well-motivated scenario of this kind. Here the hidden-sector dark matter can be produced in abundance through the Kibble-Zurek mechanism describing the non-equilibrium dynamics of defects produced in a second order phase transition. We revisit the original topological dark matter scenario, focusing on hidden-sector magnetic monopoles, and consider more general cosmological histories. We find that a monopole mass of order (1–10 5 ) PeV is generic for the thermal histories considered here, if monopoles are to entirely reproduce the current abundance of dark matter. In particular, in a scenario involving an early era of matter domination, the monopole number density is always less than or equal to that in a pure radiation dominated equivalent provided a certain condition on critical exponents is satisfied. This results in a larger monopole mass needed to account for a fixed relic abundance in such cosmologies.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2020

Reducing host DNA contamination in 16S rRNA gene surveys of anthozoan microbiomes using PNA clamps

Efforts to study the microbial communities associated with corals can be limited by inefficiencies in the sequencing process due to high levels of host amplification by universal bacterial 16S rRNA gene primers. Here, we develop an inexpensive peptide nucleic acid (PNA) clamp that binds to a target sequence of host DNA during PCR and blocks amplification. We then test the ability of this PNA clamp to mitigate host contamination and increase overall microbial sequence coverage on samples from three coral species: the gorgonians Eunicea flexuosa and Gorgonia ventalina, and the scleractinian Porites panamensis. The 20-bp PNA clamp was designed using DNA from E. flexuosa. Adding the PNA clamp during PCR increased the percentage of microbial reads in E. flexuosa samples more than 11-fold. Microbial community diversity was similar without- and with-PNA clamps, as were the relative frequencies of the ten most abundant ASVs (amplicon sequence variants), indicating that the clamps successfully blocked host DNA amplification while simultaneously increasing microbial DNA amplification proportionally across the most abundant taxa. The reduction of E. flexuosa DNA correlated with an increase in the abundance of rarer taxa. The clamp also increased the average percentage of microbial reads in another gorgonian, G. ventalina, by 8.6-fold without altering the microbial community beta diversity, and in a distantly related scleractinian coral, P. panamensis, by nearly double. The reduction of host contamination correlated with the number of nucleotide mismatches between the host amplicon and the PNA clamp. The PNA clamp costs as little as $0.48 per sample, making it an efficient and cost-effective solution to increase microbial sequence coverage for high-throughput sequencing of coral microbial communities.

16S rRNA gene sequencing↗
DOE OSTI2024

Does manganese influence grass litter decomposition on a Hawaiian rainfall gradient?

Plant litter is a well-defined pool of organic matter (OM) in which the influence of manganese (Mn) on decomposition (both decomposition rate and the mix of compounds ultimately transferred to soil OM) has been clearly demonstrated in temperate forests. However, no similar study exists on grasslands and the effect of foliar Mn versus soil-derived Mn on litter decomposition is poorly known. We used a 5-month and 12-month field, and 10-month laboratory experiments to evaluate litter decomposition on the Kohala rainfall gradient (Island of Hawai‘i) in areas with different foliar and soil Mn abundances, and on which a single plant species (Pennisetum clandestinum) dominates primary production and the litter pool. The chemical imaging analyses of decomposed litter revealed that Mn 2+ oxidized to Mn 3+ and Mn 4+ on grass litter during decompositions—hallmarks of Mn-driven litter oxidation. However, these transformations and Mn abundance did not predict greater litter mass loss through decomposition. These observations demonstrate that the importance of Mn to an ecosystem’s C cycle does not rely solely on the metal’s abundance and availability.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2025

Evaluating genetic and environmental controls on silicon accumulation in Populus trichocarpa leaves

Background and aims: Silicon (Si) accumulation and formation of non-crystalline silica particles (phytoliths) inside plant cells contribute to plant function, soil carbon storage, and Si reservoirs in soils. A better understanding of how genetic and environmental factors control Si accumulation may improve understanding of Si cycling between plants and soil and its impacts on other ecosystem processes. Methods: This study examined how genetic potential for Si uptake and silicification translated to Si concentrations and phytolith formation in Populus trichocarpa leaves. Leaves were collected from four different genotypes of cultivated poplar trees that were grown in a common garden and possess established differences in leaf-level gene expression related to Si transport and silicification. Scanning electron microscopy and subsequent image analysis were used to quantify Si concentrations and phytolith abundance and features. Results: Phytoliths were identified in nearly all leaves but were often absent at very low (< 0.5 wt.%) Si concentrations at the leaf surface. The proportion of leaf area occupied by phytoliths increased as Si content increased. Silicon content and phytolith abundance at the leaf surface did not vary across genotypes, but surface Si was weakly correlated with plant available Si in soil. Conclusion: Phytoliths were prevalent in P. trichocarpa leaves; however, the genetic potential for Si uptake and silicification at the leaf-level poorly predicted foliar Si and phytolith abundance. Uniformly low expression of Si uptake genes in the roots may have reduced differences across genotypes. Consequently, Si accumulation in leaves was likely more strongly influenced by soil Si bioavailability, phenology, or additional environmental factors.

Image analysis↗
DOE OSTI2025

Short-term warming increased soil heterotrophic respiration due to enhanced active microbial community

Soil microbes, particularly active microbes, play a crucial role in conserving soil carbon under climate change, especially in forest ecosystems, constituting over 50% of global soil organic carbon. Nevertheless, the response mechanisms of active microbial community to climate warming and their subsequent impacts on soil heterotrophic respiration (Rh) remain insufficiently understood. To resolve this mechanistic uncertainty, we implemented a 3-year soil translocation experiment to investigate soil warming effects on active microbial community and Rh. We used 16S rRNA gene amplicon sequencing, Metatranscriptomics sequencing, coupled with correlation analyses to explore the linkages between warming-induced shifts in Rh and the active microbial community. Our results demonstrated that warming of soil induced a 55% enhancement in Rh. Concurrently, the Shannon index and Richness of active microbial community increased by 20% and 117%, respectively. Warming significantly altered active microbial community composition, inducing a compositional shift characterized by 0.5-to 2-fold increases in the abundances of Proteobacteria, Chloroflexi, and Actinobacteria. Our study also revealed 92–100% increases in the abundance of C-degradation functional genes encoding starch, cellulose, and lignin decomposition pathways within active microbial community under warming. Statistical analyses identified significant positive correlations between Rh and the abundance of Proteobacteria and Actinobacteria, as well as expression levels of functional genes associated with lignin and cellulose decomposition pathways. Furthermore, our results suggested that short-term warming increased Rh through altering diversity, species composition, and C degradation functional genes of active microbial community providing insights into the influence of microbial communities on soil C-climate feedbacks under climate warming.

Active microbial community↗
DOE OSTI2021

Assessing Microbial Communities Related to Mercury Transformations in Contaminated Streambank Soils

In nature, the bioaccumulative potent neurotoxin methylmercury (MeHg) is produced from inorganic mercury (Hg) predominantly by anaerobic microorganisms. Hg-contaminated soils are a potential source of MeHg due to microbial activity. We examine streambank soils collected from the contaminated East Fork Poplar Creek (EFPC) in Tennessee, USA, where seasonal variations in MeHg levels have been observed throughout the year, suggesting active microbial Hg methylation. In this study, we characterized the microbial community in contaminated bank soil samples collected from two locations over a period of one year and compared the results to soil samples from an uncontaminated reference site with similar geochemistry (n = 12). Microbial community composition and diversity were assessed by 16S rRNA gene amplicon sequencing. Furthermore, to isolate potential methylators from soils, enrichment cultures were prepared using selective media. A set of three clade-specific primers targeting the gene hgcA were used to detect Hg methylators among the δ-Proteobacteria in EFPC bank soils across all seasons. Two families among the δ-Proteobacteria that have been previously associated with Hg methylation, Geobacteraceae and Syntrophobacteraceae, were found to be predominant with relative abundances of 0.13% and 4.0%, respectively. However, in soil enrichment cultures, Firmicutes were predominant among families associated with Hg methylation. Specifically, Clostridiaceae and Peptococcaceae and their genera Clostridium and Desulfosporosinus were among the ten most abundant genera with relative abundances of 2.6% and 1.7%, respectively. These results offer insights into the role of microbial communities on Hg transformation processes in contaminated bank soils in EFPC. Identifying the biogeochemical drivers of MeHg production is critical for future remediation efforts.

54 ENVIRONMENTAL SCIENCES↗