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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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DOE OSTI2015

SBOL Visual: A Graphical Language for Genetic Designs

Synthetic Biology Open Language (SBOL) Visual is a graphical standard for genetic engineering. We report that it consists of symbols representing DNA subsequences, including regulatory elements and DNA assembly features. These symbols can be used to draw illustrations for communication and instruction, and as image assets for computer-aided design. SBOL Visual is a community standard, freely available for personal, academic, and commercial use (Creative Commons CC0 license). We provide prototypical symbol images that have been used in scientific publications and software tools. We encourage users to use and modify them freely, and to join the SBOL Visual community: http://www.sbolstandard.org/visual.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2018

Predicting peak spectral sensitivities of vertebrate cone visual pigments using atomistic molecular simulations

Vision is the dominant sensory modality in many organisms for foraging, predator avoidance, and social behaviors including mate selection. Vertebrate visual perception is initiated when light strikes rod and cone photoreceptors within the neural retina of the eye. Sensitivity to individual colors, i.e., peak spectral sensitivities (λ max ) of visual pigments, are a function of the type of chromophore and the amino acid sequence of the associated opsin protein in the photoreceptors. Large differences in peak spectral sensitivities can result from minor differences in amino acid sequence of cone opsins. To determine how minor sequence differences could result in large spectral shifts we selected a spectrally-diverse group of 14 teleost Rh2 cone opsins for which sequences and λ max are experimentally known. Classical molecular dynamics simulations were carried out after embedding chromophore-associated homology structures within explicit bilayers and water. These simulations revealed structural features of visual pigments, particularly within the chromophore, that contributed to diverged spectral sensitivities. Statistical tests performed on all the observed structural parameters associated with the chromophore revealed that a two-term, first-order regression model was sufficient to accurately predict λ max over a range of 452–528 nm. The approach was accurate, efficient and simple in that site-by-site molecular modifications or complex quantum mechanics models were not required to predict λ max . These studies identify structural features associated with the chromophore that may explain diverged spectral sensitivities, and provide a platform for future, functionally predictive opsin modeling.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2014

Connecting Performance Analysis and Visualization to Advance Extreme Scale Computing

In the first week of January 2014 Dagstuhl hosted a Perspectives Workshop on “Connecting Performance Analysis and Visualization to Advance Extreme Scale Computing”. The event brought together two previously separate communities – from Visualization and HPC Performance Analysis – to discuss a long term joined research agenda. The goal was to identify and address the challenges in using visual representations to understand and optimize the performance of extreme-scale applications running on today’s most powerful computing systems like climate modeling, combustion, material science or astro-physics simulations.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2016

Visualization and Data Analysis for High-Performance Computing

This is a set of slides from a guest lecture for a class at the University of Texas, El Paso on visualization and data analysis for high-performance computing. The topics covered are the following: trends in high-performance computing; scientific visualization, such as OpenGL, ray tracing and volume rendering, VTK, and ParaView; data science at scale, such as in-situ visualization, image databases, distributed memory parallelism, shared memory parallelism, VTK-m, "big data", and then an analysis example.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2017

XVIS: Visualization for the Extreme-Scale Scientific-Computation Ecosystem Final Scientific/Technical Report

The XVis project brings together the key elements of research to enable scientific discovery at extreme scale. Scientific computing will no longer be purely about how fast computations can be performed. Energy constraints, processor changes, and I/O limitations necessitate significant changes in both the software applications used in scientific computation and the ways in which scientists use them. Components for modeling, simulation, analysis, and visualization must work together in a computational ecosystem, rather than working independently as they have in the past. The XVis project brought together collaborators from predominant DOE projects for visualization on accelerators and combining their respective features into a new visualization toolkit called VTK-m.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2019

Synchrophasor Visual Integration and Event Evaluation for Utilities (SynchroVIEEU) with High Penetration of Renewables

The Hawaiian Electric Companies (Companies), operating independent grid systems on the islands of Oahu, Hawaii, Maui, Molokai and Lanai, have been contending with some of the highest levels of renewable generation from both utility-scale and distributed generation resources. Renewable penetration levels exceeding 50% of generation are some of the highest in the nation and are changing the system characteristics and requiring operational changes to grid management. The Companies have aggressively leveraged federal, multi-state and industry grant funding to demonstrate new technologies for monitoring, visualization, forecasting and analysis to inform transformation needs and to improve operational awareness, especially at the distribution level. As part of the American Recovery and Reinvestment Act (ARRA) supported efforts to facilitate integration of renewables, synchrophasor devices were deployed on the islands of Hawaii and Maui in 2010. The devices have potential to provide Hawaii Electric Light Company (HELCO) on Hawaii Island and Maui Electric Company (MECO) with additional information to support post-event analysis and to help quantify observed area-wide changes in voltage and frequency on the systems. Consistent with the U.S. Department of Energy’s (DOE) Office of Electricity Delivery and Energy Reliability (OE) FOA objectives, the goal of this project was to accelerate the integration of synchrophasor information into production grade data visualization and analysis platforms/models to inform timely, efficient and reliable operations of a modern grid in light of high penetrations of renewable resources. The project comprised a two-year development effort to investigate the integration and visualization of synchrophasor field data into production-ready transmission and distribution proactive modeling efforts and a common data analysis platform application currently being used by the Companies. Conceptually, the project was about getting the right data to the right people at the right time in an easily accessible and timely environment.

24 POWER TRANSMISSION AND DISTRIBUTION↗

DOE OSTI2019

Next-Generation Analysis and Visualization Platform for Manufacturing and Engineering Workflows (Final Report)

Advanced manufacturing and engineering are fundamental to the economic strength and national security of the United States. With the introduction of advanced modeling and simulation practices in manufacturing and engineering over the last several decades, we are producing better products, more quickly, and at decreased cost. Through the adoption of high-performance computing (HPC) enabled workflows, in small- to medium-sized manufacturers and engineering firms, which employ fewer than 500 people, is renewing United States manufacturing and engineering. Despite successes, there are significant barriers to widespread adoption of these tools. Our Phase I SBIR project, Next-Generation Analysis and Visualization Platform for Manufacturing and Engineering Workflows, aims to address several of these barriers. Our project helped us evaluate the feasibility and benefits and mitigate risks of asynchronous processing for analysis and visualization workflows. We evaluated the impact of asynchronous, non-blocking communication can have on the user experience in a complex visualization application. Besides the impact on users, we wanted to understand the impacts on developers (development application programming interfaces (APIs))and generated applications (robustness and stability). Any asynchronous platform implementation is bound to rely on multiple threads which can make the programming model extraordinarily complex and prone to bugs. If not managed carefully, the complexity and resulting instability would be an unacceptable evolution for widely used production tools like ParaView and putting the success of the Phase II project at risk.

42 ENGINEERING↗

DOE OSTI2017

Scalable Data Management, Analysis, and Visualization (SDAV) Institute (Final Report)

The purpose of the SDAV institute is to provide tools and expertise in scientific data management, analysis, and visualization to application scientists on leadership-class computing facilities. Our goal is to actively work with application teams to assist them in achieving breakthrough science, and to provide technical solutions in the data management, analysis, and visualization regimes that are broadly used by the computational science community. Over the last 5 years members of our institute worked directly with application scientists to assist them by applying the best tools and technologies at our disposal. We also enhanced our tools based on input from scientists on their needs. Many of the applications we have been working with are based on connections with scientists established in previous years. However, we contacted additional scientists though our outreach activities, as well as engaging application teams running on leading DOE computing systems. Our approach is to employ an evolutionary development and deployment process: first considering the application of existing tools, followed by the customization necessary for each particular application, and then the deployment in real frameworks and infrastructures. The institute is organized into three areas, each with area leaders, who keep track of progress, engagement of application scientists, and results. The areas are: (1) Data Management, (2) Data Analysis, and (3) Visualization. This report is organized along these areas. However, often there are multiple technologies from these areas that are applied to a single application need. These are described on a case-by-case basis in the appropriate sections. This final report for the SDAV Institute covers the 5-year period from February 2012 to February 2017. This report covers activities in all SDAV institutions listed next. Laboratories: Argonne National Laboratory (ANL), Lawrence Berkeley National Laboratory (LBNL), Lawrence Livermore National Laboratory (LLNL), Los Alamos National Laboratory (LLNL), Oak Ridge National Laboratory (ORNL), Sandia National Laboratory (SNL). Universities: Georgia Institute of Technology, North Carolina State University, Northwestern University, Ohio State University, Oregon State University, Rutgers University, University of California at Davis, University of Utah. Industry: Kitware.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2019

l3d2vtk: An MCNPTools Utility to Enable LNK3DNT File Visualization & Post-processing [Slides]

This presentation discusses the objective of the project which is to provide a utility (among other utilities) that improves MCNP analysis post-processing and visualization capabilities. Much recent work has been done to improve MCNP post-processing and visualization. It also discusses the goals of the project, which are to create a product that is portable, open, easily interrogated by a user, no dependencies, including a mesh tally-to-VTK conversion, an EEOUT-to-VTK conversion, and an interactive, 3-D, visualization environments (e.g., ParaView). The presentation also discusses the reasons regarding why this is being done, which are to provide physical insight into behaviors and trends, to facilitate error mitigation (easier to “see” errors than “read” them), and to improve communication with collaborators. It also discusses why this is being done now as analyses are getting ever-more complicated and are more flexible in terms of build, test, and deployment capabilities.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

DOE OSTI2020

WNR Facility FP90L Visual Inspection Report

An external and internal visual inspection of FP90L was performed March 2020. This report presents the results from this visual inspection, detailing individual components and their relative location along FP90L within the WNR facility bulk shield. This report will present the data gathered from this visual inspection. Then, utilizing available facility drawings as well as LIDAR data from surveys performed in the spring/summer of 2019, this inspection data will be merged with previous efforts and studies regarding the WNR facility to document a more complete representation of the current state of WNR FP90L.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

DOE OSTI2020

Advanced Visualization of Silent Error Propagation in HPC Applications

Last year, we refactored the major components of the SpotSDC visualization platform and added a visualization component for fault tolerance boundary. Also, we designed a new analysis framework to understand an application resiliency with a significantly less amount of samples compared to previous approaches. We evaluated the visualization platform and analysis framework for multiple critical HPC computation kernels and collected evidence for the effectiveness of the method developed.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2022

Intelligent Process Visualization through Nuclear Operation Process Modeling, Reasoning, and Object Detection from Field Videos (Final Report)

This report is a deliverable for the “Final Report” task of DOE NEET Project 19-16790, "Context-Aware Safety Information Display for Nuclear Field Workers." This project's overall goal is to test the hypothesis that integrating computer vision and process reasoning methods will enable proactive visualization of the safe operation and maintenance processes of Nuclear Power Plants (NPP) for field workers. Augmented Reality (AR) glasses adopting such proactive safety information visualization techniques can significantly increase personnel safety and reduce the NPP’s operating costs. The current practice of monitoring NPPs requires workers to switch between digital models, data, and physical workspaces in identifying relevant but potentially occluded objects and in assessing the risks of operation and maintenance processes. On the other hand, frequently changed field conditions require field workers to report to supervisors for real-time guidance. Such guidance is essential to ensure that changing conditions will not invalidate or endanger the work order and other ongoing processes that may jeopardize NPP operations. Additionally, incorrect recognition of equipment objects can result in communication errors and safety problems. AR techniques can assist engineers in viewing the physical workspaces with objects labeled with detailed operation procedures and safety reminders during field operations. The project team developed an “Intelligent Context-Aware Safety Information Display” (ICAD) for supporting Nuclear Power Plant (NPP) field workers in achieving safe and efficient execution of a series of operational tasks in uncertain and changing workspaces of an NPP. Before designing the ICAD-AR prototype, the project team synthesized NPP operational knowledge models through literature review studies, surveys, interviews with domain experts, and knowledge modeling. The project team conducted an extensive study of the operational procedures of various NPPs, and digital technologies that can support the safe and efficient execution of those procedures in different NPP operational contexts. This literature review helped the project team conduct surveys and interviews with nuclear engineers and field workers to identify three categories of information. The NPP knowledge modeling efforts reveal that the three categories of information identified have different levels of importance in a typical procedure of carrying out a series of tasks to achieve a specific NPP operation goal (e.g., shutdown, mode changes). These three categories of information include 1) Workspace dynamics – the changing spatial arrangements of workspaces, tools, protection equipment, and supporting materials, 2) Workflow prognostics – the dynamic dependencies between different parts of an NPP that functionally support and influence each other in terms of safety and efficiency, and 3) Hazards – objects and spaces that contain hazardous materials or physical conditions that can pose risks to workers or mechanical systems. The project team has profiled the importance levels of these categories of information into a knowledge model. This knowledge model specifies what types of information are more critical for a given task in a given workspace so that computers can automatically identify critical objects and sensors in a scene for delivering context-ware safety information to field workers through AR devices. Significant research development of this project results in technical research outcomes and a prototyping system that illustrates the technical feasibility of establishing an ICAD-AR system supporting the proactive safety information display for nuclear field workers. This final report summarizes the project team’s technological achievements in the past three years. Overall, the project team completed the development and integration of five techniques into a prototype ICAD Augmented Reality (ICAD-AR) system and demonstrated the developed system’s real-time execution in a mechanical room. The project team completed the analysis of using this prototype in other types of workspaces based on 3D image data and digital design models collected from two additional workspaces (a water treatment plant and a flow loop training facility). The integrated techniques include 1) Natural Language Processing (NLP) algorithms supporting the generation and updates of nuclear fieldwork process models based on text analysis of work packages and operation manuals; 2) sensor log analysis for predicting control actions in given sensor reading contexts; 3) computer vision algorithms for automatic localization and navigation of workers; 4) object detection algorithms for identifying task-related objects and correlated sensors for safety checking; 5) AR technique as a platform for supporting the integration. The testing results of these five techniques have shown that 1) the sensor log analysis model can predict the next control action with an accuracy of 0.883; 2) the trained natural language processing model can extract more than 80% of the critical information from paper-based procedures (PBPs); 3) the navigation algorithm with the integration of Visual Inertial Odometry (VIO) and Non-Recursive Bayesian Filter methods make operator’s trajectory estimation resilient to drift error; 4) the computer vision algorithm can detect task-specific and safety-critical objects with an average accuracy of 95.3%. The project team used work procedures collected from a flow loop training facility and two datasets collected from two mechanical rooms simulating the workspaces of NPPs to demonstrate the technical capabilities of the developed ICAD-AR prototype. The demonstration validated the technical feasibility of establishing the ICAD-AR system for nuclear field workers and identified the challenges in 1) automatic text analysis of work packages; 2) use of limited samples of sensor logs for predicting the proper timings of control actions; 3) reliably tracking workers and their task progress in mechanical rooms with many similar objects.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

DOE OSTI2026

Mitigating Traffic Congestion Through Visual Cues: Advancing Transportation Safety and Efficiency

While humans have an innate ability to estimate speed and distance, this capability is inherently imprecise. This imprecision has significant implications for traffic systems, which are highly sensitive to fluctuations in movement. Even small variations in velocity and following distances between travelers can create congestion in high-traffic environments. The absence of an effective and widely adopted solution creates significant transportation inefficiency. However, emerging technologies offer promising ways to help mitigate this issue. This paper will analyze the effectiveness of visual cues in reducing traffic congestion. Specifically, this paper presents an experiment using addressable LEDs to evaluate their effectiveness in influencing pedestrian behavior. These programmable lights enable individual control over each LED in a strip, allowing for dynamic lighting effects that serve as useful visual cues. The goal of this paper is to demonstrate that visual cues, such as addressable LED guidance, can effectively influence traveler behavior and contribute to reducing traffic congestion.

33 ADVANCED PROPULSION SYSTEMS↗

DOE OSTI2026

What Is the Agent Doing? Visualizing Agentic AI Querying Workflows

We explore how visualizations can help users understand what an AI agent is doing as it builds and runs queries over data. As part of the LinkQ system, a natural language interface for querying knowledge graphs with a large language model (LLM), we designed two complementary views: A State Diagram that shows where the agent is within a larger workflow, and a Live Action Display that gives real-time updates about the agent's current task. In a study with 14 practitioners, we found that these visuals helped participants build stronger mental models of the agent's behavior while also increasing their confidence in the system. However, we also observed that users sometimes trusted incorrect outputs simply because the agent appeared to be doing the "right" thing. Our findings point to both the value and risk of visualizing agent behavior in interactive AI systems.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2017

Visualizations of Travel Time Performance Based on Vehicle Reidentification Data

This paper provides a visual reference of the breadth of arterial performance phenomena based on travel time measures obtained from reidentification technology that has proliferated in the past 5 years. These graphical performance measures are revealed through overlay charts and statistical distribution as revealed through cumulative frequency diagrams (CFDs). With overlays of vehicle travel times from multiple days, dominant traffic patterns over a 24-h period are reinforced and reveal the traffic behavior induced primarily by the operation of traffic control at signalized intersections. A cumulative distribution function in the statistical literature provides a method for comparing traffic patterns from various time frames or locations in a compact visual format that provides intuitive feedback on arterial performance. The CFD may be accumulated hourly, by peak periods, or by time periods specific to signal timing plans that are in effect. Combined, overlay charts and CFDs provide visual tools with which to assess the quality and consistency of traffic movement for various periods throughout the day efficiently, without sacrificing detail, which is a typical byproduct of numeric-based performance measures. These methods are particularly effective for comparing before-and-after median travel times, as well as changes in interquartile range, to assess travel time reliability.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

DOE OSTI2026

Cryo-EM visualization of viruses from partially irrigated soils

Viruses are numerically the most abundant forms on Earth, and most are present in soil. Even though viruses are highly abundant in soil and critical to rhizosphere function, visualizing the diverse morphotypes within soil has been challenging. The difficulty is primarily due to the heterogenous nature of isolated suspensions that typically contain nanometer to micron scale debris which renders protein crystallography for structural studies unfeasible and hinders cryo-electron microscopy due to ice thickness and contrast issues. Here we employed and compared a simple spin filtration method to cleanup solutions of extracted viruses for direct observation with cryo-electron microscopy. The method employs common physical biochemical separation steps to remove large and small debris which dramatically improves image quality and preservation of structural features to permit visualizing morphotypes not typically seen with conventional negative stain approaches. In addition to tailed and non-tailed polyhedral phages, several under reported or novel morphotypes of soil viruses are directly visualized as a particle library with both 2D and 3D information.

cryo-EM↗

DOE OSTI2023

CERF Visualization: Wind turbine siting in central California, USA from 2020-2050

CERF Visualization: Wind turbine siting in central California from 2020-2050 Visualization of CERF outputs for years 2020-2050 in 5-year time steps for a region in central California, USA. This visualization uses Google Earth Pro to zoom into the region of interest, show the layered application of wind suitability criteria, show the siting for each year in planform, and then zoom into to show functional wind turbines as they are added annually to the area of interest.

Energy↗

DOE OSTI2013

Exploration of High-Dimensional Scalar Function for Nuclear Reactor Safety Analysis and Visualization

The next generation of methodologies for nuclear reactor Probabilistic Risk Assessment (PRA) explicitly accounts for the time element in modeling the probabilistic system evolution and uses numerical simulation tools to account for possible dependencies between failure events. The Monte-Carlo (MC) and the Dynamic Event Tree (DET) approaches belong to this new class of dynamic PRA methodologies. A challenge of dynamic PRA algorithms is the large amount of data they produce which may be difficult to visualize and analyze in order to extract useful information. We present a software tool that is designed to address these goals. We model a large-scale nuclear simulation dataset as a high-dimensional scalar function defined over a discrete sample of the domain. First, we provide structural analysis of such a function at multiple scales and provide insight into the relationship between the input parameters and the output. Second, we enable exploratory analysis for users, where we help the users to differentiate features from noise through multi-scale analysis on an interactive platform, based on domain knowledge and data characterization. Our analysis is performed by exploiting the topological and geometric properties of the domain, building statistical models based on its topological segmentations and providing interactive visual interfaces to facilitate such explorations. We provide a user’s guide to our software tool by highlighting its analysis and visualization capabilities, along with a use case involving dataset from a nuclear reactor safety simulation.

97 MATHEMATICS AND COMPUTING↗