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At least 505 records · Page 28

ThickBrick: optimal event selection and categorization in high energy physics. Part I. Signal discovery

We provide a prescription called ThickBrick to train optimal machine-learning-based event selectors and categorizers that maximize the statistical significance of a potential signal excess in high energy physics (HEP) experiments, as quantified by any of six different performance measures. For analyses where the signal search is performed in the distribution of some event variables, our prescription ensures that only the information complementary to those event variables is used in event selection and categorization. This eliminates a major misalignment with the physics goals of the analysis (maximizing the significance of an excess) that exists in the training of typical ML-based event selectors and categorizers. In addition, this decorrelation of event selectors from the relevant event variables prevents the background distribution from becoming peaked in the signal region as a result of event selection, thereby ameliorating the challenges imposed on signal searches by systematic uncertainties. Our event selectors (categorizers) use the output of machine-learning-based classifiers as input and apply optimal selection cutoffs (categorization thresholds) that are functions of the event variables being analyzed, as opposed to flat cutoffs (thresholds). These optimal cutoffs and thresholds are learned iteratively, using a novel approach with connections to Lloyd’s k-means clustering algorithm. We provide a public, Python implementation of our prescription, also called ThickBrick, along with usage examples.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Analytical estimation of the signal to noise ratio efficiency in axion dark matter searches using a Savitzky-Golay filter

The signal to noise ratio efficiency ϵ SNR in axion dark matter searches has been estimated using large-statistic simulation data reflecting the background information and the expected axion signal power obtained from a real experiment. This usually requires a lot of computing time even with the assistance of powerful computing resources. Employing a Savitzky-Golay filter for background subtraction, in this work, we estimated a fully analytical ϵ SNR without relying on large-statistic simulation data, but only with an arbitrary axion mass and the relevant signal shape information. Hence, our work can provide ϵ SNR using minimal computing time and resources prior to the acquisition of experimental data, without the detailed information that has to be obtained from real experiments. Axion haloscope searches have been observing the coincidence that the frequency independent scale factor ξ is approximately consistent with the ϵ SNR . This was confirmed analytically in this work, when the window length of the Savitzky-Golay filter is reasonably wide enough, i.e., at least 5 times the signal window.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Using time reversal with long duration broadband noise signals to achieve high amplitude and a desired spectrum at a target location

Time Reversal (TR) is a signal processing technique that can be used to focus acoustic waves to a specific location in space, with most applications aiming to create an impulsive focus. Here, this study instead aims to focus long-duration noise signals using TR. This paper seeks to generate higher amplitude noise at a desired location over an existing method of broadcasting equalized noise. Additionally, this paper explores various characteristics associated with focusing long duration noise using TR. The dependence of the focal amplitude on the duration of the focused signal is explored as well as the implications of using multiple sources when focusing noise. The focal amplitude decreases with longer duration and then levels off when the duration exceeds a few seconds. Coherent addition of focused noise is observed if all loudspeakers have coherent noise signals convolved with their reversed impulse responses. Lastly, focusing noise with a desired spectrum is explored.

42 ENGINEERING↗

Analytical small-signal stability analysis of low-inertia power system frequency response considering secondary frequency regulation

Modern power systems are increasingly vulnerable to frequency instability as inverter-based resources (IBRs) replace synchronous machines and reduce system rotational inertia. Existing small-signal frequency stability assessment methods are either computationally intensive, relying on simulation-driven approaches, or lack analytical stability regions that explicitly account for secondary frequency response (SFR). This paper introduces new analytical frameworks that enable evaluation small-signal frequency stability while explicitly incorporating tunable IBR and SFR parameters. Using Kharitonov’s theorem with an overbounding approach, explicit small-signal stability criteria are derived. In addition, based on Białas’ criterion and Hurwitz matrix, analytical stability regions are established to reveal feasible design spaces for SFR and IBR parameters tuning. Extensive Matlab/Simulink-based simulations validate the accuracy and computational efficiency of the proposed methods, demonstrating that coordinated tuning of SFR and IBR parameters can substantially enhance system resilience. By bridging analytical rigor with practical tunability, this work provides an analytical framework for assessing small-signal frequency stability in low-inertia grids, supporting the real-time, scalable, and resilient operation of sustainable power systems.

14 SOLAR ENERGY↗

Investigation of signal characteristics and charge sharing in AC-LGADs with laser and test beam measurements

AC-LGADs, also referred to as resistive silicon detectors, are a recent development of low-gain avalanche detectors (LGADs), based on a sensor design where the multiplication layer and n + contact are continuous, and only the metal layer is patterned. In AC-LGADs, the signal is capacitively coupled from the continuous, resistive n + layer over a dielectric to the metal electrodes. Therefore, the spatial resolution is not only influenced by the electrode pitch, but also the relative size of the metal electrodes. Signal propagation between the metallized areas and charge sharing between electrodes plays a larger role in these detectors than in conventional silicon sensors read out in DC mode. AC-LGADs from two manufacturers were studied in beam tests and with infrared laser scans. The impact of n + layer resistivity and metal electrode pitch on the charge sharing and achievable position resolution is shown. For strips with 100 μm pitch, a resolution of ¡ 5 μm can be reached. Additionally, the charge sharing between neighboring strips is investigated in more detail, indicating the induction of signal charge and subsequent re-sharing over the n + layer. Furthermore, an approach to identify signal sharing over large distances is presented.

47 OTHER INSTRUMENTATION↗

Filament-induced breakdown spectroscopy signal enhancement using optical wavefront control

Filament-induced breakdown spectroscopy (FIBS) is an analytical method that holds significant promise for remote sensing. In FIBS, it is desirable to maximize the intensity and improve the reproducibility of a selected spectroscopic feature. Here, we demonstrate the use of wavefront control in conjunction with a genetic algorithm in FIBS of metallic copper and show that this approach can increase the efficacy of filament-induced breakdown signal production. Through wavefront optimization, we enhance the intensity of a chosen characteristic spectroscopic feature of copper by a factor of approximately 3 when performing filamentation over a 1-meter distance. The relative standard deviation of signal intensity is reduced from ~17% to ~12% after optimization. We find that modification of the wavefront by introduction of astigmatism and coma maximizes the signal intensity, and these aberrations appear in two distinct trials of the genetic algorithm. We compare these findings to previous work on multiple filament control and discuss the possible mechanisms that lead to signal enhancement associated with both the beam amplitude and phase profile. A broader use of wavefront control with feedback may improve the performance of FIBS in remote sensing applications.

42 ENGINEERING↗

Protein 4.1R negatively regulates P815 cells proliferation by inhibiting C-Kit-mediated signal transduction

The proliferation of mast cells (MCs) plays a crucial role in either physiological or pathological progression of human physical. C-Kit-mediated signaling pathway has been confirmed to play a key role in MCs proliferation, and the regulatory mechanisms of C-Kit-mediated MCs proliferation need to be further explored. Our previous study found that protein 4.1R could negatively regulate T cell receptor (TCR) mediated signal pathways in CD4{sup +} T cells. Little is known about the function of 4.1R in C-Kit-mediated proliferation of MCs. In this study, P815-4.1R{sup -/-} cells were constructed by using CRISPR/Cas9 technique. Lack of 4.1R significantly enhanced P815 cells proliferation by accelerating the progression of cell cycle. 4.1R could also significantly alleviate the clinical symptoms of systemic mastocytosis (SM) and improve the overall survival of SM mice. Further study showed that 4.1R could interact directly with C-Kit to inhibit the activation of C-Kit-mediated Ras-Raf-MAPKs and PI3K-AKT signal pathways. Taken together, our findings demonstrate that protein 4.1R, a novel negative regulator, negatively regulates MCs proliferation by inhibiting C-Kit-mediated signal transduction, which maybe provide a potential target to the prevention and treatment of abnormal MCs proliferation-related diseases.

60 APPLIED LIFE SCIENCES↗

Dl-3-n-butylphthalide promotes neurite outgrowth of primary cortical neurons by Sonic Hedgehog signaling via upregulating Gap43

Highlights: • NBP promoted neurite outgrowth in immature primary cortical neurons. • NBP increased axon and dendrite extension in mature primary cortical neurons. • NBP promoted neuritogenesis and neuronal plasticity via Shh signaling pathway. • The Shh signaling pathway increased Gap43 expression in primary cortical neuron. • NBP promoted neurite outgrowth by Shh signaling via upregulating Gap43 expression. Neurite outgrowth is the basis for wiring during the development of the nervous system. Dl-3-n-butylphthalide (NBP) has been recognized as a promising treatment to improve behavioral, neurological and cognitive outcomes in ischemic stroke. However, little is known about the effect and mechanism of NBP on the neurite outgrowth. In this study, we used different methods to investigate the potential effects of NBP on the neurite extension and plasticity of immature and mature primary cortical neurons and explored the underlying mechanisms. Our results demonstrated that in immature and mature cortical neurons, NBP promoted the neurite length and intersections, increased neuritic arborization, elevated numbers of neurite branch and terminal points and improved neurite complexity and plasticity of neuronal development processes. Besides, our data revealed that NBP promoted neurite extension and branching partly by activating Shh signaling pathway via increasing Gap43 expression both in immature and mature primary cortical neurons. The present study provided new insights into the contribution of NBP in neuronal plasticity and unveiled a novel pathway to induce Gap43 expression in primary cortical neurons.

60 APPLIED LIFE SCIENCES↗

Vimentin loss promotes cancer proliferation through up-regulating Rictor/AKT/β-catenin signaling pathway

Vimentin protein is one of the main cytoskeleton and plays an important role in cell motility and metastasis. Nowadays, vimentin is widely studied as an epithelial-mesenchymal transition (EMT) marker of cancer cells while its involvement in cancer proliferation is poorly understood. In this study, we investigated the participation of vimentin in regulating cancer proliferation by silencing VIM gene in four cancer cell lines. Our results demonstrated that vimentin loss significantly induced cancer cell proliferation both in vitro and in vivo, which has not been reported so far. Mechanistically, knockdown of vimentin expression activated AKT phosphorylation and its downstream β-catenin signaling. Nuclear translocation and transcriptional activity of β-catenin was enhanced after silencing vimentin expression. Furthermore, vimentin loss could prevent Rictor from autophagy-dependent degradation via reducing AMPK-mediated autophagy signaling. AICAR, an AMPK activator, down-regulated Rictor and p-AKT levels while vimentin knockdown could rescue the effects. In vivo, it was also found that Ki67 expression and p-AKT/β-catenin signaling pathway were obviously up-regulated in the tumor tissues in which vimentin was silenced compared to control groups. Taken together, these data showed the novel function of vimentin in regulating cancer proliferation via Rictor/AKT/β-catenin signaling pathway, which suggested that it need more careful consideration before inhibiting metastatic cancers through targeting vimentin.

60 APPLIED LIFE SCIENCES↗

Identifying Different Classes of Seismic Noise Signals Using Unsupervised Learning

Abstract Proper classification of nontectonic seismic signals is critical for detecting microearthquakes and developing an improved understanding of ongoing weak ground motions. We use unsupervised machine learning to label five classes of nonstationary seismic noise common in continuous waveforms. Temporal and spectral features describing the data are clustered to identify separable types of emergent and impulsive waveforms. The trained clustering model is used to classify every 1 s of continuous seismic records from a dense seismic array with 10–30 m station spacing. We show that dominate noise signals can be highly localized and vary on length scales of hundreds of meters. The methodology demonstrates the complexity of weak ground motions and improves the standard of analyzing seismic waveforms with a low signal‐to‐noise ratio. Application of this technique will improve the ability to detect genuine microseismic events in noisy environments where seismic sensors record earthquake‐like signals originating from nontectonic sources.

Johnson, Christopher W.↗

Exploring the Potential of Using Carbonyl Sulfide to Track the Urban Biosphere Signal

Abstract Cities are implementing additional urban green as a means to capture CO 2 and become more carbon neutral. However, cities are complex systems where anthropogenic and natural components of the CO 2 budget interact with each other, and the ability to measure the efficacy of such measures is still not properly addressed. There is still a high degree of uncertainty in determining the contribution of the vegetation signal, which furthermore confounds the use of CO 2 mole fraction measurements for inferring anthropogenic emissions of CO 2 . Carbonyl sulfide (OCS) is a tracer of photosynthesis which can aid in constraining the biosphere signal. This study explores the potential of using OCS to track the urban biosphere signal. We used the Sulfur Transport and dEposition Model (STEM) to simulate the OCS concentrations and the Carnegie Ames Stanford Approach ecosystem model to simulate global CO 2 fluxes over the Bay Area of San Francisco during March 2015. Two observation towers provided measurements of OCS and CO 2 : The Sutro tower in San Francisco (upwind from the area of study providing background observations), and a tower located at Sandia National Laboratories in Livermore (downwind of the highly urbanized San Francisco region). Our results show that the STEM model works better under stable marine influence, and that the boundary layer height and entrainment are driving the diurnal changes in OCS and CO 2 at the downwind Sandia site. However, the STEM model needs to better represent the transport and boundary layer variability, and improved estimates of gross primary productivity for characterizing the urban biosphere signal are needed.

54 ENVIRONMENTAL SCIENCES↗

Seismic Ambient Noise Analyses Reveal Changing Temperature and Water Signals to 10s of Meters Depth in the Critical Zone

The critical zone sustains terrestrial life, but we have few tools to explore it efficiently beyond the first few meters of the subsurface. Using analyses of high-frequency ambient seismic noise from densely spaced seismometers deployed in the forested Shale Hills subcatchment of the Susquehanna Shale Hills Critical Zone Observatory (SSHCZO), we show that temporal changes in seismic velocities at depths from ~1 m to tens of m can be detected. Furthermore, these changes are driven by variations at the land surface. The Moving-Window Cross-Spectral (MWCS) method was employed to measure seismic-velocity changes in coda waves at hourly resolution in 10 different frequency bands. We observed a diurnal signal, a seasonal signal, and a meteorological-event-based signal. These signals were compared to time-series measurements of precipitation, well water levels, soil moisture, soil temperature, air temperature, latent heat flux, and air pressure in the heavily instrumented catchment. Most of the velocity changes can be explained by variations in temperature that result in thermoelastic strains that propagate to depth. But some double minima in seismic velocity time-series observed after large rain events were attributed in part to the effects of water infiltration. These results show that high-frequency ambient noise data may in some locations be used to detect changes in the critical zone from ~1 to ~100 m or greater depth with hourly resolution. But interpretation of such data requires multiple environmental data sets to deconvolve the complex interrelationships among thermoelastic and hydrological effects in the subsurface critical zone.

54 ENVIRONMENTAL SCIENCES↗

Sclerostin inhibits Wnt signaling through tandem interaction with two LRP6 ectodomains

Low-density lipoprotein receptor-related protein 6 (LRP6) is a coreceptor of the β-catenin-dependent Wnt signaling pathway. The LRP6 ectodomain binds Wnt proteins, as well as Wnt inhibitors such as sclerostin (SOST), which negatively regulates Wnt signaling in osteocytes. Although LRP6 ectodomain 1 (E1) is known to interact with SOST, several unresolved questions remain, such as the reason why SOST binds to LRP6 E1E2 with higher affinity than to the E1 domain alone. Here, we present the crystal structure of the LRP6 E1E2–SOST complex with two interaction sites in tandem. The unexpected additional binding site was identified between the C-terminus of SOST and the LRP6 E2 domain. This interaction was confirmed by in vitro binding and cell-based signaling assays. Its functional significance was further demonstrated in vivo using Xenopus laevis embryos. Our results provide insights into the inhibitory mechanism of SOST on Wnt signaling.

59 BASIC BIOLOGICAL SCIENCES↗

Redox active plant phenolic, acetosyringone, for electrogenetic signaling

Abstract Redox is a unique, programmable modality capable of bridging communication between biology and electronics. Previous studies have shown that the E. coli redox-responsive OxyRS regulon can be re-wired to accept electrochemically generated hydrogen peroxide (H 2 O 2 ) as an inducer of gene expression. Here we report that the redox-active phenolic plant signaling molecule acetosyringone (AS) can also induce gene expression from the OxyRS regulon. AS must be oxidized, however, as the reduced state present under normal conditions cannot induce gene expression. Thus, AS serves as a “pro-signaling molecule” that can be activated by its oxidation—in our case by application of oxidizing potential to an electrode. We show that the OxyRS regulon is not induced electrochemically if the imposed electrode potential is in the mid-physiological range. Electronically sliding the applied potential to either oxidative or reductive extremes induces this regulon but through different mechanisms: reduction of O 2 to form H 2 O 2 or oxidation of AS. Fundamentally, this work reinforces the emerging concept that redox signaling depends more on molecular activities than molecular structure. From an applications perspective, the creation of an electronically programmed “pro-signal” dramatically expands the toolbox for electronic control of biological responses in microbes, including in complex environments, cell-based materials, and biomanufacturing.

59 BASIC BIOLOGICAL SCIENCES↗

An improved synthetic signal injection routine for the Haloscope At Yale Sensitive To Axion Cold dark matter (HAYSTAC)

Microwave cavity haloscopes are among the most sensitive direct detection experiments searching for dark matter axions via their coupling to photons. When the power of the expected microwave signal due to axion–photon conversion is on the order of 10 −24 W, having the ability to validate the detector response and analysis procedure by injecting realistic synthetic axion signals becomes helpful. Here, we present a method based on frequency hopping spread spectrum for synthesizing axion signals in a microwave cavity haloscope experiment. It allows us to generate a narrow and asymmetric shape in frequency space that mimics an axion’s spectral distribution, which is derived from a Maxwell–Boltzmann distribution. In addition, we show that the synthetic axion’s power can be calibrated with reference to the system noise. Further, compared to the synthetic axion injection in the Haloscope At Yale Sensitive to Axion Cold dark matter (HAYSTAC) Phase I, we demonstrated synthetic signal injection with a more realistic line shape and calibrated power.

47 OTHER INSTRUMENTATION↗

Constraints on MeV dark matter and primordial black holes: Inverse Compton signals at the SKA

Here we investigate the possibilities for probing MeV dark matter (DM) particles and primordial black holes (PBHs) (for masses ~ 10 15 –10 17 g) at the upcoming radio telescope SKA, using photon signals from the Inverse Compton (IC) effect within a galactic halo. Pair-annihilation or decay of MeV DM particles (into e + e - pairs) or Hawking radiation from a population of PBHs generates mildly relativistic e ± which can lead to radio signals through the IC scattering on low energy cosmic microwave background (CMB) photons. We study the ability of SKA to detect such signals coming from nearby ultra-faint dwarf galaxies Segue I and Ursa Major II as well as the globular cluster ω-cen and the Coma cluster. We find that with ~ 100 hours of observation, the SKA improves the Planck constraints on the DM annihilation/decay rate and the PBH abundance for masses in the range ~ 1 to few tens of MeV and above 10 15 to 10 17 g, respectively. Importantly, the SKA limits are independent of the assumed magnetic fields within the galaxies. Previously allowed regions of diffusion parameters of MeV electrons inside a dwarf galaxy that give rise to observable signals at the SKA are also excluded. For objects like dwarf galaxies, predicted SKA constraints depend on both the DM and diffusion parameters. Independent observations in different frequency bands, e.g., radio and γ-ray frequencies, may break this degeneracy and thus enable one to constrain the combined parameter space of DM and diffusion. However, the constraints are independent of diffusion parameters for galaxy clusters such as Coma.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Constraining time dependent dark matter signals from the Sun

Dark matter (DM) particles captured by the Sun can produce high-energy electrons outside the Sun through annihilating into meta-stable mediators. The corresponding cosmic-ray electron signals observed by the space-based experiments will be time dependent due to the orbital motion of the space-based detectors. The shape of this time dependence is predictable given the orbital information of the detectors. Since the high-energy CR electron (with energy E > 100 GeV) fluxes are expected to be constant in time, non-observation of such time variation can be used to place upper limits on the DM annihilation cross section. Here we analyze the time dependence of dark matter cosmic-ray signals in three space-based experiments: AMS-02, DAMPE and CALET. Under the assumption that no time dependent signal is observed, we derive the 95% C.L. exclusion limits on the signal strength from the current data. We map our limits onto the parameter space of the dark photon model and find that the constraints are comparable with that derived from the supernova SN1987A.

79 ASTRONOMY AND ASTROPHYSICS↗

On the detectability of the moving lens signal in CMB experiments

Abstract Upcoming cosmic microwave background (CMB) experiments are expected to detect new signals probing interaction of CMB photons with intervening large-scale structure. Among these the moving-lens effect, the CMB temperature anisotropy induced by cosmological structures moving transverse to our line of sight, is anticipated to be measured to high significance in the near future. In this paper, we investigate two possible strategies for the detection of this signal: pairwise transverse-velocity estimation and oriented stacking. We expand on previous studies by including in the analysis realistic simulations of competing signals and foregrounds. We confirm that the moving lens effect can be detected at ≥ 10σlevel by a combination of CMB-S4 and LSST surveys. We show that the limiting factors in the detection depend on the strategy: for the stacking analysis, correlated extragalactic foregrounds, namely the cosmic infrared background and thermal Sunyaev Zel'dovich effect, play the most important role. The addition of foregrounds make the signal-to-noise ratio be most influenced by large and nearby objects. As for the pairwise detection, halo lensing and pair number counts are the main issues. In light of our findings, we elaborate on possible strategies to improve the analysis approach for the moving lens detection with upcoming experiments. We also deliver to the community all the simulations and tools we developed for this study.

Astronomy & Astrophysics↗