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At least 505 records · Page 28

Improving multiwell petrophysical interpretation from well logs via machine learning and statistical models

Well-log interpretation estimates in situ rock properties along well trajectory, such as porosity, water saturation, and permeability, to support reserve-volume estimation, production forecasts, and decision making in reservoir development. However, due to measurement errors, variability of well logs caused by multiple measurement vendors, different borehole tools, and nonuniform drilling/borehole conditions, estimations of rock properties with original well logs without proper preprocessing may not be accurate, especially in the context of multiwell estimation. Well-log normalization techniques such as two-point scaling and mean-variance normalization are commonly used to improve the robustness of multiwell rock-property estimation. However, these techniques do not consider the correlation between well logs and require subjective knowledge for their effective implementation. To reduce uncertainties and processing time associated with multiwell rock-property estimation from well logs, we develop discriminative adversarial (DA) and linear constraint models for well-log normalization and rock-property estimation. The DA neural network model developed for well-log normalization and interpretation can perform linear and nonlinear well-log normalization while considering the joint distribution of each well log and rock properties. However, the linear constraint model uses an ensemble of predictions from linear models to constrain well-log normalization and rock-property estimation. We also develop a divergence-based type well identification method to select type (training) wells for a test well based on the statistical similarity of associated well-log distributions instead of the interwell distance. We apply the DA model to perform well-log normalization and prediction of permeability for the Seminole San Andres Unit carbonate reservoir. Compared with the permeability predicted with the classical machine learning model without well-log normalization and models with two-point scaling normalization, the DA model yields the most accurate permeability prediction by decreasing the mean-squared error of permeability prediction by 20%–50%.

Geochemistry & Geophysics↗

Data for Purple Acid Phosphatase2 Stimulates a Futile Cycle of Lipid Synthesis and Degradation, and Mitigates the Negative Growth Effects of Triacylglycerol Accumulation in Vegetative Tissues

Storage lipids (mostly triacylglycerols, TAGs) serve as an important energy and carbon reserve in plants, and hyperaccumulation of TAG in vegetative tissues can have negative effects on plant growth. Purple acid phosphatase2 (PAP2) was previously shown to affect carbon metabolism and boost plant growth. However, the effects of PAP2 on lipid metabolism remain unknown. Here, we demonstrated that PAP2 can stimulate a futile cycle of fatty acid (FA) synthesis and degradation, and mitigate negative growth effects associated with high accumulation of TAG in vegetative tissues. Constitutive expression of PAP2 in Arabidopsis thaliana enhanced both lipid synthesis and degradation in leaves and led to a substantial increase in seed oil yield. Suppressing lipid degradation in a PAP2-overexpressing line by disrupting sugar-dependent1 (SDP1), a predominant TAG lipase, significantly elevated vegetative TAG content and improved plant growth. Diverting FAs from membrane lipids to TAGs in PAP2-overexpressing plants by constitutively expressing phospholipid:diacylglycerol acyltransferase1 (PDAT1) greatly increased TAG content in vegetative tissues without compromising biomass yield. These results highlight the potential of combining PAP2 with TAG-promoting factors to enhance carbon assimilation, FA synthesis and allocation to TAGs for optimized plant growth and storage lipid accumulation in vegetative tissues.

Biomass Analytics↗

Data for Climate vs Energy Security: Quantifying the Trade-offs of BECCS Deployment and Overcoming Opportunity Costs on Set-Aside Land

Bioenergy with carbon capture and storage (BECCS) sits at the nexus of the climate and energy security. We evaluated trade-offs between scenarios that support climate stabilization (negative emissions and net climate benefit) or energy security (ethanol production). Our spatially explicit model indicates that the foregone climate benefit from abandoned cropland (opportunity cost) increased carbon emissions per unit of energy produced by 14–36%, making geologic carbon capture and storage necessary to achieve negative emissions from any given energy crop. The toll of opportunity costs on the climate benefit of BECCS from set-aside land was offset through the spatial allocation of crops based on their individual biophysical constraints. Dedicated energy crops consistently outperformed mixed grasslands. We estimate that BECCS allocation to land enrolled in the Conservation Reserve Program (CRP) could capture up to 9 Tg C year–1 from the atmosphere, deliver up to 16 Tg CE year–1 in emissions savings, and meet up to 10% of the US energy statutory targets, but contributions varied substantially as the priority shifted from climate stabilization to energy provision. Our results indicate a significant potential to integrate energy security targets into sustainable pathways to climate stabilization but underpin the trade-offs of divergent policy-driven agendas.

Field Data↗

LQCD NN S-wave @ SU(3) on C103

This data contains lattice QCD data files for one- and two-nucleon correlation functions on the C103 ensemble. It also contains lattice QCD data sets needed to compute the HAL QCD potential on the same configurations. 'LQCD NN S-wave @ SU(3) on C103' Copyright (c) 2025, The Regents of the University of California, through Lawrence Berkeley National Laboratory (subject to receipt of any required approvals from the U.S. Dept. of Energy). All rights reserved. This work is openly licensed via CC BY 4.0.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

In-field bioreactors demonstrate dynamic shifts in microbial communities in response to geochemical perturbations

Subsurface microbial communities mediate the transformation and fate of redox sensitive materials including organic matter, metals and radionuclides. Few studies have explored how changing geochemical conditions influence the composition of groundwater microbial communities over time. We temporally monitored alterations in abiotic forces on microbial community structure using 1L in-field bioreactors receiving background and contaminated groundwater at the Oak Ridge Reservation, TN. Planktonic and biofilm microbial communities were initialized with background water for 4 days to establish communities in triplicate control reactors and triplicate test reactors and then fed filtered water for 14 days. On day 18, three reactors were switched to receive filtered groundwater from a contaminated well, enriched in total dissolved solids relative to the background site, particularly chloride, nitrate, uranium, and sulfate. Biological and geochemical data were collected throughout the experiment, including planktonic and biofilm DNA for 16S rRNA amplicon sequencing, cell counts, total protein, anions, cations, trace metals, organic acids, bicarbonate, pH, Eh, DO, and conductivity. We observed significant shifts in both planktonic and biofilm microbial communities receiving contaminated water. This included a loss of rare taxa, especially amongst members of the Bacteroidetes, Acidobacteria, Chloroflexi, and Betaproteobacteria, but enrichment in the Fe- and nitrate- reducing Ferribacterium and parasitic Bdellovibrio. These shifted communities were more similar to the contaminated well community, suggesting that geochemical forces substantially influence microbial community diversity and structure. These influences can only be captured through such comprehensive temporal studies, which also enable more robust and accurate predictive models to be developed.

59 BASIC BIOLOGICAL SCIENCES↗

Step-patterned survivorship curves: Mortality and loss of equilibrium responses to high temperature and food restriction in juvenile rainbow trout ( Oncorhynchus mykiss )

While survivorship curves typically exhibit smooth declines over time, step-patterned curves can occur with multiple stressors within a life stage. To explore this process, we examined the effects of heat (24°C) and food restriction on juvenile rainbow trout (Oncorhynchus mykiss Walbaum) in challenge experiments. We observed step-patterned survivorship curves determined by mortality and loss of equilibrium (LOE) endpoints. To examine the cause of heterogeneity in the stress responses from early to late mortality and LOE, we measured indices of energetic reserves. The step transition in the survivorship curves, the peak mortality rates, and start of when individuals reached a critical energetic threshold (14% dry mass; 4.0 kJ∙g -1 energy) all occurred at around days 10–15 of the challenge. The coherence in these temporal patterns suggest heterogeneity in the cohort stress responses, in which an early subgroup died from heat stress and a late subgroup died from starvation. Thus, their endpoint sensitivities resulted in step-patterned survivorship curves. We discuss the implications of the study for understanding effects of multiple stressors on population heterogeneity and note the possible significance of stress response selection under climate change in which heat stress and food limitations occur in concert.

54 ENVIRONMENTAL SCIENCES↗

Nutrient and carbon concentrations in dated soil cores at US-OWC Ameriflux wetland site (OWC NERR)

Soil cores were sampled at the Old Woman Creek (OWC) National Estuarine Research Reserve at the south shore of Lake Erie, near Huron, Ohio, USA. OWC is a temperate mineral soil marsh. We dated the soil cores using lead isotope analysis and measured the concentrations of carbon and nutrients (nitrogen, phosphorus) throughout the core depths. We analyzed 36 cores, sampled along three transects at areas of the wetland with different hydrological regimes. Each transect included three coring sites at different water depth categories (shallow, intermediate deep) with four core samples per coring site. The data can be used to determine the carbon sequestration rates and nutrient accumulation rates, at multiple locations throughout OWC wetland.Dataset, in csv format, with data variables in columns, and different cores and core depths slices in rows, includes results from 36 sediment cores (0-30 cm depth) taken at 9 locations (4 replicates at each location) along 3 gradients of water depth (shallow, intermediate, deep), each at a different hydrologic location (outflow, backflow, middle). At each depth slice within a core, we provide depth, date (using 210Pb), bulk density, and the concentrations of carbon, nitrogen, phosphorus, d13C, and d15N.

54 ENVIRONMENTAL SCIENCES↗

Subsurface redox potential and water level at the Elkhorn Slough NERR

This resource contains various hydrological, and geochemical data from Elkhorn Slough National Estuarine Research Reserve from the years 2020 and 2021. These data have been used to assess how continuous measurements of environmental variables. The data can be used to understand processes at timescales over which biochemical transformations can happen. Especially, the data were used to explain the local subsurface hydrology, and its implication, in an experimental transect in a coasta estuary. Water level and water temperature were measured in-situ with Solinst pressure transducer loggers (Ontario, Canada). Redox potential was collected using in-situ, redox sensors (Paleoterra, The Netherlands) connected to CR1000X Campbell data loggers (Logan, Utah). Meteorological data was gathered from the Elkhorn Slough meteorological station.

54 ENVIRONMENTAL SCIENCES↗

Soil and soil fraction radiocarbon, C and N from the Enriched Background Isotope Study, Oak Ridge National Laboratory, Tennessee, USA

A large accidental 14CO2 release at the Oak Ridge Reservation in Tennessee, USA provided a strong label pulse into adjacent, well-studied oak forests, resulting in highly elevated Δ14C values in leaf litter (~1000‰) and roots (~260–450‰). A four-year manipulative study was conducted to provide insight into mechanisms underlying soil Organic matter dynamics, specifically to determine the relative contribution of litter versus roots to the bulk mineral soil C pool, as well as to free light, occluded light and heavy fractions. The heavy fraction was further split into fractions with densities of 1.7–2.4 g cm-3 and >2.4 g cm-3 to test the homogeneity of the mineral-associated fraction of C. Substantial concentrations of label were detected in all soil fractions within a year of the 14CO2 release, indicating rapid incorporation of newly fixed photosynthates in all fractions of soil organic C, regardless of differences in stability inferred by previous work. This rapid incorporation of label occurred only in treatments where roots were labeled, indicating that roots are the major source of inputs to mineral soil C stocks at these sites. Separation of the heavy fraction into subfractions of intermediate (1.7–2.4 g cm -3) and high (>2.4 g cm-3) density indicated that both subfractions incorporated label at similar rates, despite significant differences in degree of microbial processing.

54 ENVIRONMENTAL SCIENCES↗

Carbon flux measurements from chambers collected between July to October 2022 at Old Woman Creek, Huron, Ohio.

This dataset contains carbon dioxide and methane flux measurements collected via chamber sampling at Old Woman Creek National Estuarine Research Reserve in Huron, OH. These data were generated to understand temporal and vegetation patterns associated with wetland carbon cycling. Specifically, this dataset intends to answer how carbon dioxide and methane fluxes change monthly and hourly across sites with vegetation and without vegetation. Data includes chamber measurements that were measured in both sites with vegetation and without vegetation and that were collected hourly, for 12 hours, and monthly, for four months. The file soilrespiration_data.csv contains these data, and the metadata file (soilrespiration_chammetadata.csv) and location metadata file (soilrespiration_locationmetadata.csv) have information on locations where the chambers were placed and sampled in the wetland. Data processing was done on raw methane fluxes (Flux_CH4) to remove the influence of ebullition (Flux_CH4_ebullition) to get a diffusive flux (Flux_CH4_diffusive).

54 ENVIRONMENTAL SCIENCES↗

miniDOT Logger Dissolved Oxygen and Temperature Data of Wetland Surface Water, Old Woman Creek NERR, Huron, OH, 2022-06-15 to 2023-12-15

This dataset contains timeseries data of dissolved oxygen (DO) and temperature measurements of the surface water in a wetland at Old Woman Creek Estuarine Research Reserve in Huron, OH. Dissolved oxygen and temperature measurements were made in the overlying water column of wetland to assess how oxygen changed over time with hydrological events. Measurements were collected by a miniDOT Logger. Data was collected over 1.5 years (June 2022 to December 2023). The miniDOT_DO_Temp_DataFile.csv contains the DO and temperature measurements that were collected every 10 minutes. The water levels of the site varied over-time as the wetland flooded and dried. So, sometimes the miniDOT logger would be out of the water column, resulting in high oxygen levels. Depth of the water column was recorded at every in-person site visit. The miniDOT_Depth_DataFile.csv contains the hand-measured surface water depth measurements for comparison to the logger-collected data. Information on the deployment and measurement methods can be found in the miniDOT_InstallationMethods.csv file.

54 ENVIRONMENTAL SCIENCES↗

Carbon flux measurements from chambers collected between April to October 2023 at Old Woman Creek, Huron, Ohio

This dataset contains carbon dioxide and methane gas flux measurements collected via chamber sampling at Old Woman Creek National Estuarine Research Reserve in Huron, OH. These data were generated to understand temporal and vegetation patterns associated with wetland carbon cycling. Specifically, this dataset intends to answer how carbon dioxide and methane fluxes change monthly and hourly across sites with vegetation and without vegetation. Data includes chamber measurements that were measured in both sites with vegetation and without vegetation and that were collected hourly (7 AM to 7 PM or 5 AM to 10 PM and monthly (April to October). The file soilrespiration_data23.csv contains these data, and the metadata file (soilrespiration_chammetadata23.csv) and location metadata file (soilrespiration_locationmetadata23.csv) have information on locations where the chambers were placed and sampled in the wetland. Data processing was done on raw methane fluxes (Flux_CH4) to remove the influence of ebullition (Flux_CH4_ebullition) to get a diffusive flux (Flux_CH4_diffusive).

54 ENVIRONMENTAL SCIENCES↗

Sapling bark water vapor conductance measurements from 2016-2019, Panama

This data package contains lab-based measurements of bark water vapor conductance from saplings in seasonally dry forests in the Parque Natural Metropolitano and Eugene Eisenmann Reserve, and a shadehouse in Panama. A total of 14 populations of 8 tree species were measured. The goal was to test whether bark water vapour conductance (gbark) was associated with values of stem water deficit that were published previously. In the attached zip file are two Excel metadata files with site information and descriptions of the CSV datasets included, as well as a PDF file "Sapling bvc metadata description," which describes the methods and protocol thoroughly. This data is associated with the publication Wolfe Brett T. 2020Bark water vapour conductance is associated with drought performance in tropical treesBiol. Lett.1620200263 https://doi.org/10.1098/rsbl.2020.0263.

54 ENVIRONMENTAL SCIENCES↗

AmeriFlux US-KM4 KBS Marshall Farms Smooth Brome Grass (Ref)

This is the AmeriFlux version of the carbon flux data for the site US-KM4 KBS Marshall Farms Smooth Brome Grass (Ref). Site Description - The site was recruited to the USDA’s Conservation Reserve Program (CRP) grassland in 1987 when it was planted to smooth brome grass. The grass was cut every three years but left in place until 2009; uncut since then.

Robertson, G. Philip↗

AmeriFlux US-KM1 KBS Marshall Farms Corn

This is the AmeriFlux version of the carbon flux data for the site US-KM1 KBS Marshall Farms Corn. Site Description - The site was planted to smooth brome grass under the USDA’s Conservation Reserve Program (CRP) grassland since 1987 before conversion. The grass was cut every three years but left in place. The site was converted to no-till soybean in 2009 and to no-till continuous corn from 2010 onwards.

Robertson, G. Philip↗

AmeriFlux US-KM2 KBS Marshall Farms Prairie

This is the AmeriFlux version of the carbon flux data for the site US-KM2 KBS Marshall Farms Prairie. Site Description - The site was planted to smooth brome grass under the USDA’s Conservation Reserve Program (CRP) grassland since 1987 before conversion. The grass was cut every three years but left in place. The site was converted to no-till soybean in 2009 and to perennial native prairie from 2010 onwards. Starting from 2011, the prairie is harvested every autumn/fall.

Robertson, G. Philip↗

AmeriFlux US-KM3 KBS Marshall Farms Switchgrass

This is the AmeriFlux version of the carbon flux data for the site US-KM3 KBS Marshall Farms Switchgrass. Site Description - The site was planted to smooth brome grass under the USDA’s Conservation Reserve Program (CRP) grassland since 1987 before conversion. The grass was cut every three years but left in place. The site was converted to no-till soybean in 2009 and to perennial switchgrass from 2010 onwards. Starting from 2011, the switchgrass is harvested every autumn/fall.

Robertson, G. Philip↗

AmeriFlux US-xML NEON Mountain Lake Biological Station (MLBS)

This is the AmeriFlux version of the carbon flux data for the site US-xML NEON Mountain Lake Biological Station (MLBS). Site Description - Mountain Lake Biological Station (MLBS) is a remote, but accessible research station and is a unit of the College of Arts & Sciences at University of Virginia. It sits at 1160 meters on the top of Salt Pond Mountain in the southern Appalachian mountains in southwestern Virginia. It consists of 259 hectares of forested reserve.

Network), NEON (National Ecological Observatory↗