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At least 505 records · Page 28

Preemptive optimization of a clinical antibody for broad neutralization of SARS-CoV-2 variants and robustness against viral escape

Most previously authorized clinical antibodies against severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) have lost neutralizing activity to recent variants due to rapid viral evolution. To mitigate such escape, we preemptively enhance AZD3152, an antibody authorized for prophylaxis in immunocompromised individuals. Using deep mutational scanning (DMS) on the SARS-CoV-2 antigen, we identify AZD3152 vulnerabilities at antigen positions F456 and D420. Through two iterations of computational antibody design that integrates structure-based modeling, machine-learning, and experimental validation, we co-optimize AZD3152 against 24 contemporary and previous SARS-CoV-2 variants, as well as 20 potential future escape variants. Our top candidate, 3152-1142, restores full potency (100-fold improvement) against the more recently emerged XBB.1.5+F456L variant that escaped AZD3152, maintains potency against previous variants of concern, and shows no additional vulnerability as assessed by DMS. This preemptive mitigation demonstrates a generalizable approach for optimizing existing antibodies against potential future viral escape.

59 BASIC BIOLOGICAL SCIENCES↗

Precision measurement of the neutral pion lifetime

The explicit breaking of the axial symmetry by quantum fluctuations gives rise to the so-called axial anomaly. This phenomenon is solely responsible for the decay of the neutral pion π0 into two photons (γγ), leading to its unusually short lifetime. Here, we precisely measured the decay width Γ of the π 0 → γγ process. The differential cross sections for π0 photoproduction at forward angles were measured on two targets, carbon-12 and silicon-28, yielding Γ(π 0 → γγ)=7.798±0.056(stat.)±0.109(syst.) eV, where stat. denotes the statistical uncertainty and syst. the systematic uncertainty. We combined the results of this and an earlier experiment to generate a weighted average of Γ(π 0 → γγ)=7.802±0.052(stat.)±0.105(syst.) eV. Our final result has a total uncertainty of 1.50% and confirms the prediction based on the chiral anomaly in quantum chromodynamics.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

mRNA-LNP HIV-1 trimer boosters elicit precursors to broad neutralizing antibodies

Germline-targeting (GT) HIV vaccine strategies are predicated on deriving broadly neutralizing antibodies (bnAbs) through multiple boost immunogens. However, as the recruitment of memory B cells (MBCs) to germinal centers (GCs) is inefficient and may be derailed by serum antibody–induced epitope masking, driving further B cell receptor (BCR) modification in GC-experienced B cells after boosting poses a challenge. Using humanized immunoglobulin knockin mice, we found that GT protein trimer immunogen N332-GT5 could prime inferred-germline precursors to the V3-glycan–targeted bnAb BG18 and that B cells primed by N332-GT5 were effectively boosted by either of two novel protein immunogens designed to have minimum cross-reactivity with the off-target V1-binding responses. The delivery of the prime and boost immunogens as messenger RNA lipid nanoparticles (mRNA-LNPs) generated long-lasting GCs, somatic hypermutation, and affinity maturation and may be an effective tool in HIV vaccine development.

Science & Technology - Other Topics↗

An antibody class with a common CDRH3 motif broadly neutralizes sarbecoviruses

The devastation caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has made clear the importance of pandemic preparedness. To address future zoonotic outbreaks due to related viruses in the sarbecovirus subgenus, we identified a human monoclonal antibody, 10-40, that neutralized or bound all sarbecoviruses tested in vitro and protected against SARS-CoV-2 and SARS-CoV in vivo. Comparative studies with other receptor-binding domain (RBD)–directed antibodies showed 10-40 to have the greatest breadth against sarbecoviruses, suggesting that 10-40 is a promising agent for pandemic preparedness. Moreover, structural analyses on 10-40 and similar antibodies not only defined an epitope cluster in the inner face of the RBD that is well conserved among sarbecoviruses but also uncovered a distinct antibody class with a common CDRH3 motif. Our analyses also suggested that elicitation of this class of antibodies may not be overly difficult, an observation that bodes well for the development of a pan-sarbecovirus vaccine.

59 BASIC BIOLOGICAL SCIENCES↗

A novel Shiga toxin 2a neutralizing antibody therapeutic with low immunogenicity and high efficacy

ABSTRACT Shiga toxin-producingEscherichia coliinfections are difficult to treat due to the risk of antibiotic-induced stress upregulating the production of toxins, medical treatment is consequently limited to supportive care to prevent the development of hemolytic uremic syndrome (HUS). Here, we introduce a potentially therapeutic humanized mouse monoclonal antibody (Hu-mAb 2-5) targeting Stx2a, the most common Shiga toxin subtype identified from outbreaks. We demonstrate that Hu-mAb 2-5 has low immunogenicity in healthy adultsex vivoand high neutralizing efficacyin vivo, protecting mice from mortality and HUS-related tissue damage.

Microbiology↗

Structure of a Vaccine-Induced, Germline-Encoded Human Antibody Defines a Neutralizing Epitope on the SARS-CoV-2 Spike N-Terminal Domain

Structural characterization of infection- and vaccination-elicited antibodies in complex with antigen provides insight into the evolutionary arms race between the host and the pathogen and informs rational vaccine immunogen design. We isolated a germ line-encoded monoclonal antibody (mAb) from plasmablasts activated upon mRNA vaccination against severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) and determined its structure in complex with the spike glycoprotein by electron cryomicroscopy (cryo-EM). We show that the mAb engages a previously uncharacterized neutralizing epitope on the spike N-terminal domain (NTD). The high-resolution structure reveals details of the intermolecular interactions and shows that the mAb inserts its heavy complementarity-determining region 3 (HCDR3) loop into a hydrophobic NTD cavity previously shown to bind a heme metabolite, biliverdin. We demonstrate direct competition with biliverdin and that, because of the conserved nature of the epitope, the mAb maintains binding to viral variants B.1.1.7 (alpha), B.1.351 (beta), B.1.617.2 (delta), and B.1.1.529 (omicron). Our study describes a novel conserved epitope on the NTD that is readily targeted by vaccine-induced antibody responses.

59 BASIC BIOLOGICAL SCIENCES↗

Observation and differential cross section measurement of neutral current DIS events with an empty hemisphere in the Breit frame

The Breit frame provides a natural frame to analyze lepton–proton scattering events. In this reference frame, the parton model hard interactions between a quark and an exchanged boson defines the coordinate system such that the struck quark is back-scattered along the virtual photon momentum direction. In Quantum Chromodynamics (QCD), higher order perturbative or non-perturbative effects can change this picture drastically. As Bjorken-x decreases below one half, a rather peculiar event signature is predicted with increasing probability, where no radiation is present in one of the two Breit-frame hemispheres and all emissions are to be found in the other hemisphere. At higher orders in $\alpha$ s or in the presence of soft QCD effects, predictions of the rate of these events are far from trivial, and that motivates measurements with real data. We report on the first observation of the empty current hemisphere events in electron–proton collisions at the HERA collider using data recorded with the H1 detector at a center-of-mass energy of 319 GeV. The fraction of inclusive neutral-current DIS events with an empty hemisphere is found to be 0.0112 ± 3.9% stat ± 4.5% syst ± 1.6% mod in the selected kinematic region of 150 < Q 2 < 1500 GeV 2 and inelasticity 0.14 < y < 0.7. The data sample corresponds to an integrated luminosity of 351.1 pb -1 , sufficient to enable differential cross section measurements of these events. The results show an enhanced discriminating power at lower Bjorken-x among different Monte Carlo event generator predictions.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Search for light neutral particles decaying promptly into collimated pairs of electrons or muons in pp collisions at $\sqrt{s}$ = 13 TeV with the ATLAS detector

A search for a dark photon, a new light neutral particle, which decays promptly into collimated pairs of electrons or muons is presented. The search targets dark photons resulting from the exotic decay of the Standard Model Higgs boson, assuming its production via the dominant gluon-gluon fusion mode. The analysis is based on 140 fb -1 of data collected with the ATLAS detector at the Large Hadron Collider from proton-proton collisions at a center-of-mass energy of 13 TeV. Events with collimated pairs of electrons or muons are analysed and background contributions are estimated using data-driven techniques. No significant excess in the data above the Standard Model background is observed. Upper limits are set at 95% confidence level on the branching ratio of the Higgs boson decay into dark photons between 0.001% and 5%, depending on the assumed dark photon mass and signal model.

Aad, G. [Aix-Marseille Université] (ORCID:00000002↗

Strangeness-neutral equation of state for QCD with a critical point

We present a strangeness-neutral equation of state for QCD that exhibits critical behavior and matches lattice QCD results for the Taylor-expanded thermodynamic variables up to fourth-order in µ B /T. It is compatible with the SMASH hadronic transport approach and has a range of temperatures and baryonic chemical potentials relevant for phase II of the Beam Energy Scan at RHIC. We provide an updated version of the software BES-EoS, which produces an equation of state for QCD that includes a critical point in the 3D Ising model universality class. This new version also includes isentropic trejectories and the critical contribution to the correlation length. Since heavy-ion collisions have zero global net-strangeness density and a fixed ratio of electric charge to baryon number, the BES-EoS is more suitable to describe this system. Comparison with the previous version of the EoS is thoroughly discussed.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Benchmarking a neutral-atom quantum computer

In this study, we simulated the algorithmic performance of a small neutral atom quantum computer and compared its performance when operating with all-to-all versus nearest-neighbor connectivity. This comparison was made using a suite of algorithmic benchmarks developed by the Quantum Economic Development Consortium. Circuits were simulated with a noise model consistent with experimental data from [Nature 604, 457 (2022)]. We find that all-to-all connectivity improves simulated circuit fidelity by [Formula: see text]–[Formula: see text], compared to nearest-neighbor connectivity.

Computer Science↗

Perspective—The Role of Solid Oxide Fuel Cells in Our Carbon-Neutral Future

Solid Oxide Fuel Cells (SOFCs) offer the potential for compelling value propositions in stationary and transportation applications through their high efficiency and fuel flexibility—two critical characteristics that will allow them to facilitate our transition to a carbon neutral economy. This paper describes the overall integration synergies that can be realized in hybrid systems comprised of an SOFC and an engine bottom-cycle. The development to date is reviewed, and application-specific value propositions are explored. Finally, the environmental impact of hybrid systems are discussed, and key challenges to overcome are examined for this highly efficient conversion technology to achieve commercial success.

25 ENERGY STORAGE↗

Dynamic Pressure Drag on Rising Buoyant Thermals in a Neutrally Stable Environment

Abstract This study examines dynamic pressure drag on rising dry buoyant thermals. A theoretical expression for drag coefficient C d as a function of several other nondimensional parameters governing thermal dynamics is derived based on combining the thermal momentum budget with the similarity theory of Scorer. Using values for these nondimensional parameters from previous studies, the theory suggests drag on thermals is small relative to that on solid spheres in laminar or turbulent flow. Two sets of numerical simulations of thermals in an unstratified, neutrally stable environment using an LES configuration of the Cloud Model 1 (CM1) are analyzed. One set has a relatively low effective Reynolds number R e and the other has an order-of-magnitude-higher R e ; these produce laminar and turbulent resolved-scale flows, respectively. Consistent with the theoretical C d , the magnitude of drag is small in all simulations. However, whereas the laminar thermals have C d ≈ 0.01, the turbulent thermals have weakly negative drag ( C d ≈ −0.1). This difference is explained by the laminar thermals having near vertical symmetry but the turbulent thermals exhibiting considerable vertical asymmetry of their azimuthally averaged flows. In the laminar thermals, buoyancy rapidly becomes concentrated around the main centers of rotation located along the horizontal central axis, leading to expansion of thermals via baroclinic vorticity generation but doing little to break vertical symmetry of the flow. Vertical asymmetry of the azimuthally averaged flow of turbulent thermals is attributed mainly to small-scale resolved eddies that are concentrated in the upper part of the thermals.

Meteorology & Atmospheric Sciences↗

Multiscale affinity maturation simulations to elicit broadly neutralizing antibodies against HIV

The design of vaccines against highly mutable pathogens, such as HIV and influenza, requires a detailed understanding of how the adaptive immune system responds to encountering multiple variant antigens (Ags). Here, we describe a multiscale model of B cell receptor (BCR) affinity maturation that employs actual BCR nucleotide sequences and treats BCR/Ag interactions in atomistic detail. We apply the model to simulate the maturation of a broadly neutralizing Ab (bnAb) against HIV. Starting from a germline precursor sequence of the VRC01 anti-HIV Ab, we simulate BCR evolution in response to different vaccination protocols and different Ags, which were previously designed by us. The simulation results provide qualitative guidelines for future vaccine design and reveal unique insights into bnAb evolution against the CD4 binding site of HIV. Our model makes possible direct comparisons of simulated BCR populations with results of deep sequencing data, which will be explored in future applications.

Conti, Simone (ORCID:000000017986567X)↗

Nanobody screening and machine learning guided identification of cross-variant anti-SARS-CoV-2 neutralizing heavy-chain only antibodies

Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) continues to persist, demonstrating the risks posed by emerging infectious diseases to national security, public health, and the economy. Development of new vaccines and antibodies for emerging viral threats requires substantial resources and time, and traditional development platforms for vaccines and antibodies are often too slow to combat continuously evolving immunological escape variants, reducing their efficacy over time. Previously, we designed a next-generation synthetic humanized nanobody (Nb) phage display library and demonstrated that this library could be used to rapidly identify highly specific and potent neutralizing heavy chain-only antibodies (HCAbs) with prophylactic and therapeutic efficacy in vivo against the original SARS-CoV-2. In this study, we used a combination of high throughput screening and machine learning (ML) models to identify HCAbs with potent efficacy against SARS-CoV-2 viral variants of interest (VOIs) and concern (VOCs). To start, we screened our highly diverse Nb phage display library against several pre-Omicron VOI and VOC receptor binding domains (RBDs) to identify panels of cross-reactive HCAbs. Using HCAb affinity for SARS-CoV-2 VOI and VOCs (pre-Omicron variants) and model features from other published data, we were able to develop a ML model that successfully identified HCAbs with efficacy against Omicron variants, independent of our experimental biopanning workflow. This biopanning informed ML approach reduced the experimental screening burden by 78% to 90% for the Omicron BA.5 and Omicron BA.1 variants, respectively. The combined approach can be applied to other emerging viruses with pandemic potential to rapidly identify effective therapeutic antibodies against emerging variants.

Antibodies↗

Transverse Single-Spin Asymmetries of Midrapidity Direct Photons and Neutral Mesons at PHENIX

Results are presented for the transverse single-spin asymmetries of direct photons, neutral pions, and eta mesons for |\eta|<0.35 | η | < 0.35 from p^\uparrow + p p ↑ + p collisions with \sqrt{s} = 200 s = 200 GeV at PHENIX. As hadrons, \pi^0 π 0 and \eta η mesons are sensitive to both initial- and final-state effects and at midrapidity probe the dynamics of gluons along with a mix of quark flavors. Because direct photon production does not include hadronization, the direct photon TSSA is only sensitive to initial-state effects and at midrapidity provides a clean probe of the gluon dynamics in transversely polarized protons. All three of these results will help constrain the collinear twist-3 trigluon correlation function as well as the gluon Sivers function, improving our knowledge of spin-dependent gluon dynamics in QCD.

Lewis, Nicole↗

Measuring Electron Diffusion and Constraining the Neutral Current $\pi^0$ Background for Single-Photon Events in MicroBooNE

Liquid Argon Time Projection Chambers (LArTPCs) are a rising technology in the field of experimental neutrino physics. LArTPCs use ionization electrons and scintillation light to reconstruct neutrino interactions with exceptional calorimetric and position resolution capabilities. Here, I present two analyses conducted in the MicroBooNE LArTPC at Fermilab: a measurement of the longitudinal electron diffusion coefficient, $D_L$, in the MicroBooNE detector and a constraint of the systematic uncertainty on MicroBooNE's single-photon analysis due to the dominant neutral current (NC) \piz{} background. Longitudinal electron diffusion modifies the spatial and timing resolution of the detector, and measuring it will help correct for these effects. Furthermore, current measurements of $D_L$ in liquid argon are sparse and in tension with one another, making the MicroBooNE measurement especially valuable. We report a measurement of $3.74^{+0.28}_{-0.29}$ cm$^2$/s. MicroBooNE is searchin g for si ngle-photon events as a potential explanation for the MiniBooNE low-energy excess (LEE) of electron neutrino-like events, which has been interpreted as evidence for low-mass sterile neutrinos. However, this search is overwhelmed by a large NC \piz{} background. By performing a sideband selection of NC \piz{} events, we apply a data-driven rate constraint to the single-photon analysis to reduce the systematic uncertainties. At present, this constraint improves the single-photon analysis' median sensitivity to the LEE-like signal from 0.9$\sigma$ to $1.5\sigma$. This sensitivity is expected to improve significantly as more data become available. Both of these measurements will not only benefit MicroBooNE, but also inform future LArTPC experiments.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Roundtable on Foundational Science for Carbon-Neutral Hydrogen Technologies (Technology Status Document)

This document summarizes the status of carbon-neutral hydrogen production, storage and transport, and utilization. The state of the art in the implementation, limitations, and challenges of these technologies are summarized. Sources of hydrogen are broadly categorized as hydrcoarbons or water and the processes used to convert these sources to hydrogen as catalytic, thermochemical, or electrochemical. Catalytic steam methane reforming of methane is the dominant process today. Other processes have smaller production volumes and the technology is less mature, but are being deployed at increasing rates, most notably water electrolyzers for hydrogen fueling stations. Efficient transport and storage of hydrogen is one of the major challenges facing a hydrogen-based energy economy. This arises in part from its low volumetric energy density necessitating very high pressures or cryogenic temperatures to store sufficient amounts for practical applications. High-pressure compressed hydrogen cylinders are the incumbent hydrogen storage technology for applications such as light-duty fuel cell electric vehicles, for example. The storage of hydrogen in materials or in chemicals is being pursued to address the issues associated with compression, such as parasitic energy loss and weight, size, and cost of storage containers. The complex nature of the chemical and physical processes involved in the uptake, storage, and release of hydrogen has slowed the discovery of suitable hydrogen storage materials. Both small and large-scale storage face the challenge of embrittlement of the storage media by hydrogen. There is a myriad of uses of hydrogen offering the promises of improving the efficiency of various applications and reducing or eliminating CO 2 emissions. These range from direct electrochemical conversion to electricity to power vehicles and grid-level stationary applications to combustion to production of chemicals and commodities. One of the most impactful applications in terms of reduction of CO 2 emissions is fuel cell passenger vehicles and heavy-duty vehicles such as class 8 trucks. The challenges facing widespread deployment of fuel cells, beyond the major hurdle of the lack of a hydrogen distribution infrastructure, are cost and durability, primarily related to the precious metal cathode catalyst and its durability. The other uses of hydrogen from conversion to hydrocarbons, polymer upcycling, and upgrading of bio-oils are at varying stages of maturity and also face fundamental challenges associated with catalytic processes and materials.

08 HYDROGEN↗

Imaging electric field with electrically neutral particles

It used to think that is impossible to determine/measure electric field inside a physically isolated volume, especially inside an electrically shielded space, because a conventional electric-field sensor can only measure electric field at the location of the sensor, and when an electric-field source is screened by conductive materials, no leakage electric field can be detected. For first time, we experimentally demonstrated that electrically neutral particles, neutrons, can be used to measure/image electric field behind a physical barrier. This work enables a new measurement capability that can visualize electric-relevant properties inside a studied sample or detection target for scientific research and engineering applications.

42 ENGINEERING↗