The Crystal Structure of 5-Aminouracil and the Ambiguity of Alternative Polymorphs
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Characterizing structural ensembles of intrinsically disordered proteins (IDPs) and intrinsically disordered regions (IDRs) of proteins is essential for studying structure–function relationships. Due to the different neutron scattering lengths of hydrogen and deuterium, selective labeling and contrast matching in small-angle neutron scattering (SANS) becomes an effective tool to study dynamic structures of disordered systems. However, experimental timescales typically capture measurements averaged over multiple conformations, leaving complex SANS data for disentanglement. We hereby demonstrate an integrated method to elucidate the structural ensemble of a complex formed by two IDRs. We use data from both full contrast and contrast matching with residue-specific deuterium labeling SANS experiments, microsecond all-atom molecular dynamics (MD) simulations with four molecular mechanics force fields, and an autoencoder-based deep learning (DL) algorithm. From our combined approach, we show that selective deuteration provides additional information that helps characterize structural ensembles. We find that among the four force fields, a99SB-disp and CHARMM36m show the strongest agreement with SANS and NMR experiments. In addition, our DL algorithm not only complements conventional structural analysis methods but also successfully differentiates NMR and MD structures which are indistinguishable on the free energy surface. Finally, we present an ensemble that describes experimental SANS and NMR data better than MD ensembles generated by one single force field and reveal three clusters of distinct conformations. Our results demonstrate a new integrated approach for characterizing structural ensembles of IDPs.
A reduction-based manufacturing process for creating technologically important multilayer structures from lattice-matched ferromagnetic insulators and ferromagnetic conductors is reported. The process is demonstrated by growing a permanently magnetized double-layer structure, consisting of lattice-matched conducting (Ni,Co) and insulating (Ni 0.4 Co 0.6 ) 3 O 3 layers, through a single deposition cycle. The orientation of the metal cation network is preserved after reduction. Close-packing displacements of Ni and Co take place in such a manner that the in-plane hexagonal arrangement is preserved. This is critical for ensuring high-quality interfaces joining the layers. At room temperature the hysteresis loop is centered. At low temperature the oxide layer becomes ferrimagnetically ordered, accompanied by a shift of the hysteresis loop along the magnetic field axis. The shift is assigned to exchange bias phenomenon. Biaxial compressive strain is responsible for the required ferrimagnetic ordering. Finally, spin valves and closely related magnetoresistance random access memory and spin-transfer-torque magnetic random access memory devices are addressed as potential applications.
This article synthesizes a filtering adaptive output feedback controller for multivariable nonlinear systems with mismatched uncertainties and unmodeled dynamics. The multivariable nonlinear systems under consideration have both matched and mismatched uncertainties, which satisfy the semiglobal Lipschitz condition. The unmodeled dynamics are bounded-input bounded-output stable. By adopting an estimation/cancellation strategy, a piecewise constant adaptive law drives the estimation error to zero at every time instant, which yields the adaptive parameters; a disturbance rejection control law is designed to compensate the nonlinear uncertainties within the bandwidth of low-pass filters. The matched uncertainties are cancelled directly by adopting their opposite in the control signal, while a dynamic inversion of the system is required to eliminate the effect of the mismatched uncertainties on the output. A feedforward control law is designed to track a given command. Since the virtual reference system defines the best performance that can be achieved by the closed-loop system, the uniform performance bounds are derived for the states and control signals via comparison. Both numerical and practical examples are provided to illustrate the effectiveness of the proposed filtering adaptive output feedback control architecture, comparisons with the model reference adaptive control demonstrates the superiority of the proposed control method.
Abstract Barite (BaSO 4 ) crystals are an important additive in lead acid batteries due to their ability to promote the controlled nucleation and growth of anglesite (PbSO 4 ) during battery cycling. This is due to BaSO 4 ’s isostructural match with PbSO 4 , which facilitates epitaxial nucleation. However, BaSO 4 ’s efficacy as a nucleation promoter is limited by lattice mismatches between the two phases of 1–5%. Here, strontium‐enriched barite, (Ba,Sr)SO 4 , is synthesized to produce a nucleating promoter that displays an improved lattice match with PbSO 4 . Nucleation of PbSO 4 from Pb‐rich sulfuric acid solutions on strontium‐free and strontium‐enriched barite (up to 17 mol% Sr) is investigated using in‐situ atomic force microscopy and optical microscopy. At low strontium concentrations, PbSO 4 forms by the Stranski–Krastanov growth pathway (monolayer + island formation), with most nucleation occurring on edges and surface defects. At higher concentrations, the layer‐by‐layer growth mechanism known as Frank van‐der‐Merwe growth is observed, which allows for facile growth of continuous PbSO 4 films across the BaSO 4 surface. These films are successfully re‐dissolved on exposure to Pb‐free sulfuric acid. The results show that strontium incorporation fundamentally alters the mechanism of PbSO 4 nucleation on BaSO 4 , and thus provides a potential avenue for creating improved nucleation promoters in lead‐acid batteries.
In this work, the effect of a varying spectral irradiance and top cell bandgap on the energy harvesting efficiency of two-terminal (2T) and four-terminal (4T) perovskite//silicon tandem solar cells under outdoor operating conditions is investigated. For the comparison, an optoelectronic model employing a 1 year outdoor data set for a 4T mechanical stacked gallium arsenide (GaAs) on crystalline silicon (Si) tandem device is first validated. Then, the verified model is used to simulate perovskite//silicon tandem devices with a varying perovskite top cell bandgap for a location in Golden, Colorado, USA. Here, a spectral binning method to efficiently reduce and improve the visualization of the 1 min-resolved environmental data while maintaining the simulation accuracy is introduced. The findings reveal that, for a device that is current matched under standard testing conditions, the annual spectral deviation reduces the energy harvesting efficiency by only 2% rel . When additional realistic losses for the 4T are taken into account, 2T devices are shown to have an energy-harvesting efficiency that is at parity or higher. Deviations in the top cell bandgap are more than 0.1 eV from current matching result in a reduced energy harvesting efficiency of more than 5% rel for the 2T tandem device.
Building on the recent derivation of a bare factorization theorem for the b-quark induced contribution to the h → γγ decay amplitude based on soft-collinear effective theory, we derive the first renormalized factorization theorem for a process described at subleading power in scale ratios, where λ = m b /M h « 1 in our case. We prove two refactorization conditions for a matching coefficient and an operator matrix element in the endpoint region, where they exhibit singularities giving rise to divergent convolution integrals. The refactorization conditions ensure that the dependence of the decay amplitude on the rapidity regulator, which regularizes the endpoint singularities, cancels out to all orders of perturbation theory. We establish the renormalized form of the factorization formula, proving that extra contributions arising from the fact that “endpoint regularization” does not commute with renormalization can be absorbed, to all orders, by a redefinition of one of the matching coefficients. We derive the renormalization-group evolution equation satisfied by all quantities in the factorization formula and use them to predict the large logarithms of order $αα^2_sL^k$ in the three-loop decay amplitude, where $L=ln(-M^2_h/m^2_b)$ and k = 6, 5, 4, 3. We find perfect agreement with existing numerical results for the amplitude and analytical results for the three-loop contributions involving a massless quark loop. On the other hand, we disagree with the results of previous attempts to predict the series of subleading logarithms $~αα^n_sL^{2n+1}$
In this work, we report a lattice calculation of x-dependent valence pion generalized parton distributions (GPDs) at zero skewness with multiple values of the momentum transfer −t. The calculations are based on an N f = 2 + 1 gauge ensemble of highly improved staggered quarks with Wilson-Clover valence fermion. The lattice spacing is 0.04 fm, and the pion valence mass is tuned to be 300 MeV. We determine the Lorentz-invariant amplitudes of the quasi-GPD matrix elements for both symmetric and asymmetric momenta transfers with similar values and show the equivalence of both frames. Then, focusing on the asymmetric frame, we utilize a hybrid scheme to renormalize the quasi-GPD matrix elements obtained from the lattice calculations. After the Fourier transforms, the quasi-GPDs are then matched to the light-cone GPDs within the framework of large momentum effective theory with improved matching, including the next-to-next-to-leading order perturbative corrections, and leading renormalon and renormalization group resummations. We also present the 3-dimensional image of the pion in impact-parameter space through the Fourier transform of the momentum transfer −t.
We derive a factorization formula for inclusive jet production in heavy-ion collisions using the tools of Effective Field Theory (EFT). We show how physics at widely separated scales in this process can be systematically separated by matching to EFTs at successively lower virtualities. Owing to a strong scale separation, we recover a vacuum-like DGLAP evolution above the jet scale, while the additional low-energy scales induced by the medium effectively probe the internal structure of the jet. As a result, the cross section can be written as a series with an increasing number of subjets characterized by perturbative matching coefficients each of which is convolved with a distinct function. These functions encode broadening, medium-induced radiations as well as quantum interference such as the Landau-Pomeranchuk-Migdal effect and color coherence dynamics to all orders in perturbation theory. As a first application of this EFT framework, we investigate the case of an unresolved jet and show how the cross section can be factorized and fully separate the jet dynamics from the universal physics of the medium. To compare to the existing literature, we explicitly compute the medium jet function at next-to-leading order in the coupling and leading order in medium opacity.
We present a renormalization-group (RG) analysis of dark matter interactions with the standard model, where dark matter is allowed to be a component of an electroweak multiplet, and has a mass at or below the electroweak scale. We consider, in addition to the gauge interactions, the complete set of effective operators for dark matter interactions with the standard model above the weak scale, up to and including mass dimension six. We calculate the RG evolution of these operators from the high scale Λ down to the weak scale, and perform the matching to the tower of effective theories below the weak scale. We also summarize the RG evolution below the weak scale and the matching to the nonrelativistic nuclear interactions. We present several numerical examples and show that in certain cases the dark matter — nucleus scattering rate can change by orders of magnitude when the electroweak running is included.
We consider the SU(N) Yang-Mills theory, whose topological sectors are restricted to the instanton number with integer multiples of p. We can formulate such a quantum field theory maintaining locality and unitarity, and the model contains both 2π-periodic scalar and 3-form gauge fields. This can be interpreted as coupling a topological theory to Yang-Mills theory, so the local dynamics becomes identical with that of pure Yang-Mills theory. The theory has not only $\mathbb{Z}$ N 1-form symmetry but also $\mathbb{Z}$ p 3-form symmetry, and we study the global nature of this theory from the recent ’t Hooft anomaly matching. The computation of ’t Hooft anomaly incorporates an intriguing higher-group structure. We also carefully examine that how such kinematical constraint is realized in the dynamics by using the large-N and also the reliable semiclassics on $\mathbb{R}$ 3 × S 1 , and we find that the topological susceptibility plays a role of the order parameter for the $\mathbb{Z}$ p 3-form symmetry. Introducing a fermion in the fundamental or adjoint representation, we find that the chiral symmetry becomes larger than the usual case by $\mathbb{Z}$ p , and it leads to the extra p vacua by discrete chiral symmetry breaking. No dynamical domain wall can interpolate those extra vacua since such objects must be charged under the 3-form symmetry in order to match the ’t Hooft anomaly.
Parton distribution functions (PDFs) at large x are challenging to extract from experimental data, yet they are essential for understanding hadron structure and searching for new physics beyond the Standard Model. Within the framework of the large momentum P z expansion of lattice quasi-PDFs, we investigate large x PDFs, where the matching coefficient is factorized into the hard kernel, related to the active quark momentum xP z , and the threshold soft function, associated with the spectator momentum (1 − x)P z . The renormalization group equation of the soft function enables the resummation of the threshold double logarithms α k ln 2k (1 − x), which is crucial for a reliable and controllable calculation of large x PDFs. Our analysis with pion valence PDFs indicates that perturbative matching breaks down when the spectator momentum (1 − x)P z approaches Λ QCD , but remains valid when both xP z and (1 − x)P z are much larger than Λ QCD . Additionally, we incorporate leading renormalon resummation within the threshold framework, demonstrating good perturbative convergence in the region where both spectator and active quark momenta are perturbative scales.
We describe a number of improvements to the Geneva method for matching NNLO calculations to parton shower programs. In particular, we detail changes to the resummed calculation used in the matching procedure, including disentangling the cross section dependence on factorisation and beam scales, and an improved treatment of timelike logarithms. We also discuss modifications in the implementation of the splitting functions which serve to make the resummed calculation differential in the higher multiplicity phase space. These changes improve the stability of the numerical cancellation of the nonsingular term at small values of the resolution parameter. As a case study, we consider the gluon-initiated Higgs boson production process gg → H. We validate the NNLO accuracy of our predictions against independent calculations, and compare our showered and hadronised results with recent data taken at the ATLAS and CMS experiments in the diphoton decay channel, finding good agreement.
We study low-energy dynamics of [SU($\textit{N}$)]$^K$ chiral quiver gauge theories in connection with $\mathcal{N}$ = 1 super Yang-Mills (SYM) theory, and quantum chromodynamics with bi-fundamental fermions (QCD(BF)). These theories can be obtained by $\mathbb Z_K$ orbifold projections of $\mathcal{N}$ = 1 SU($\textit{N K}$) SYM theory, but the perturbative planar equivalence does not extend nonperturbatively for $\textit{K}$ ≥ 3. In order to study low-energy behaviors, we analyze these systems using ’t Hooft anomaly matching and reliable semiclassics on $\mathbb R^3 × S^1$. Thanks to ’t Hooft anomaly that involves 1-form center symmetry and discrete chiral symmetry, we predict that chiral symmetry must be spontaneously broken in the confinement phase, and there exist $\textit{N}$ vacua. Theories with even $\textit{K}$ possess a physical θ angle despite the presence of massless fermions, and we further predict the $\textit{N}$-branch structure associated with it; the number of vacua is enhanced to 2$\textit{N}$ at θ = π due to spontaneous $\textit{C P}$ breaking. Both of these predictions are explicitly confirmed by reliable semiclassics on $\mathbb R^3 × S^1$ with the double-trace deformation. Symmetry and anomaly of odd-$\textit{K}$ theories are the same as those of the $\mathcal{N}$ = 1 SYM, and the ones of even-$\textit{K}$ theories are same as those of QCD(BF). We unveil why there exists universality between vector-like and chiral quiver theories, and conjecture that their ground states can be continuously deformed without quantum phase transitions. We briefly discuss anomaly inflow on the domain walls connecting the vacua of the theory and possible anomaly matching scenarios.
We use a combination of AdS/CFT and supersymmetric localization to study codimension-2 defects in 5d SCFTs and their gauge theory deformations. The 5d SCFTs are engineered by ( p , q ) 5-brane webs, with defects realized by D3-branes ending on the 5-brane webs. We obtain the defect free energies and find that gauge theory descriptions of the combined 5d/3d systems can be connected to the UV defect SCFTs through a form of F-maximization which extremizes over different gauge theory defects. This leads to a match between the defect free energies obtained from supersymmetric localization in the gauge theories on the one hand and string theory results on the other. We extend this match to defect RG flows.
In this work, we study the production of Higgs boson pairs at next-to-next-to-leading order in QCD matched to parton showers, using the Geneva framework and working in the heavy-top-limit approximation. This includes the resummation of large logarithms of the zero-jettiness T 0 up to the next-to-next-to-next-to-leading-log accuracy. This process features an extremely large momentum transfer, which makes its study particularly relevant for matching schemes such as that employed in Geneva, where the resummation of a variable different from that used in the ordering of the parton shower is used. To further study this effect, we extend the original shower interface designed for Pythia8 to include other parton showers, such as Dire and Sherpa.
We investigate the collinear matching of transverse momentum dependent (TMD) distributions at large values of x, computing and resumming the leading large-x asymptotics for matching coefficients. The large-x resummation is done directly within TMD distributions, ensuring the process-independence of the result. The derived resummation formulas are valid for all TMD distributions (except the pretzelosity). Their application improves perturbative convergence, provides practical estimation for unknown higher-order contributions, and sets restrictions for the nonperturbative part of models. Using the known anomalous dimensions, resummation can reach N 3 LL, often exceeding the accuracy of known coefficient functions.