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At least 505 records · Page 28
All sourcesNASA NTRSDOE OSTI
DOE OSTI2025

AmeriFlux US-BFS Robert J. Bernard Biological Field Station

This is the AmeriFlux version of the carbon flux data for the site US-BFS Robert J. Bernard Biological Field Station. Site Description - The Bernard Field Station (BFS), an 86-acre academic resource of the Claremont University Consortium, is situated within the campus of The Claremont Colleges in Claremont, CA. Its principal habitats comprise coastal sage scrub, Riversidian alluvial fan scrub, live oak forest, and grassland. The eddy covariance tower is located in the 'neck' of the field station, home to a protected area of Coastal Sage Scrub, dominated by Artemisia californica. BFS is within walking distance of Harvey Mudd College, serving as an invaluable outdoor laboratory resource for the students. With extensive flora and fauna, including over 170 species of birds, 27 species of mammals, and more than 700 species of insects, it embodies a significant ecological haven in the region that is otherwise Southern California suburbs.

Kavassalis, Sarah [Harvey Mudd College]↗
DOE OSTI2023

Opiate Sensitivity in Fruit Flies

Substance use disorder is a debilitating clinical condition in which behavioral dependence results from biological, environmental, genetic, and psychosocial factors. An epidemic surrounding the use and abuse of opioids is ravaging the world. While considerable efforts have explored the social drivers of addiction, a deeper understanding of biological causes and genetic vulnerabilities, preventative interventions, and effective treatments, have all proven elusive. This perspective article aims to remind readers that addictive natural compounds such as cocaine, nicotine, cathinone, or morphine, evolved as defensive metabolites to deter insect herbivory. The molecular mechanisms underlying motivational seeking and learning/reward show remarkable conservation since their early emergence in bilateral metazoans. An extended coevolutionary arms race subsequently weaponized these compounds into disruptors of learning, motivation, and incentivized attention. When plant chemical defenses attack insect physiology, humans are rendered susceptible due to strong conservation in the underlying molecular machinery. This perspective addresses the paradox that opiates were shaped to target insect neuropharmacology, even though this taxon appears to lack the recognized opioid receptor clade of mammals. We argue that the link is to be found in the allatostatin receptor, a basal ortholog of opioid receptors. Moreover, preliminary evidence indicates that morphine reduces Drosophila feeding and locomotion, concordant with a purported role as a defensive compound reducing herbivory. An implementation via allatostatin-mediated mechanisms is likely. This research argues for a broader heuristic perspective of substance abuse and a recognition of the evolutionary constraints that have likely shaped the biological drivers of opioid sensitivity and of its behavioral targets.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2021

Exposure to ionizing radiation disrupts normal epigenetic aging in Japanese medaka

Alterations to the epigenome are a hallmark of biological aging and age-dependent patterning of the DNA methylome (“epigenetic aging”) can be modeled to produce epigenetic age predictors. Rates of epigenetic aging vary amongst individuals and correlate to the onset of age-related disease and all-cause mortality. Yet, the origins of epigenetic-to-chronological age discordance are not empirically resolved. Here, we investigate the relationship between aging, DNA methylation, and environmental exposures in Japanese medaka (Oryzias latipes). We find age-associated DNA methylation patterning enriched in genomic regions of low CpG density and that, similar to mammals, most age-related changes occur during early life. We construct an epigenetic clock capable of predicting chronological age with a mean error of 61.1 days (~8.4% of average lifespan). To test the role of environmental factors in driving epigenetic age variation, we exposed medaka to chronic, environmentally relevant doses of ionizing radiation. Because most organisms share an evolutionary history with ionizing radiation, we hypothesized that exposure would reveal fundamental insights into environment-by-epigenetic aging interactions. Radiation exposure disrupted epigenetic aging by accelerating and decelerating normal age-associated patterning and was most pronounced in cytosines that were moderately associated with age. These findings empirically demonstrate the role of DNA methylation in integrating environmental factors into aging trajectories.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2015

Heregulin, a new interactor of the telosome/shelterin complex in human telomeres

Telomere length, shape and function depend on a complex of six core telomere-associated proteins referred to as the telosome or shelterin complex. We here demonstrate that the isoform β2 of the heregulin family of growth factors (HRGβ2) is a novel interactor of the telosome/shelterin complex in human telomeres. Analysis of protein-protein interactions using a high-throughput yeast two-hybrid (Y2H) screen identified RAP1, the only telomere protein that is conserved from yeasts to mammals, as a novel interacting partner of HRGβ2. Deletion analysis of RAP1 revealed that the linker domain, a region previously suggested to recruit negative regulators of telomere length, interacts specifically with HRGβ2. Co-immunoprecipitation and imaging experiments demonstrated that, in addition to RAP1, HRGβ2 could associate with the RAP1-associated telomeric repeat binding factor 2 (TRF2). Deletion analysis of HRGβ2 confirmed that a putative nuclear localization signal (NLS) was necessary for nuclear HRGβ2 to exert a negative regulation of telomere length whereas the N-terminus (extracellular) amino acids of HRGβ2 were sufficient to interact with RAP1/TRF2 and promote telomere shortening. Taken together, our studies identify nuclear HRGβ2 as one of the previously unknown regulators predicted to be recruited by the RAP1 linker domain to negatively regulate telomere length in human cells. Our current findings reveal that a new, but likely not the last, unexpected visitor has arrived to the “telosome/shelterin town”.

Cell Biology↗
DOE OSTI2019

Reported light in the sleep environment: enhancement of the sleep diary

Light is the primary synchronizing cue for the circadian timing system, capable of exerting robust physiological effects, even with very dim and/or brief photic exposure. Mammals, including humans, are particularly susceptible to light at night. As such, measures of light in the sleeping environment are critical for evaluating sleep health. Sleep diaries provide inexpensive measures of sleep, but do not typically include light information. Four questions probing visual perception of light in the bedtime and waking environments were added to the Consensus Sleep Diary for Morning administration. As part of a lighting intervention study, 18 hospital Labor and Delivery Department personnel completed the sleep diary for 1 week in each of two experimental conditions while wearing Actiwatch devices equipped with photosensors. Diary responses were evaluated against photosensor values from the beginning and end of each rest interval (n=194 rest intervals), as well as against sleep measures, utilizing linear mixed models. Responses to light questions were related to actual light measures at bedtime, controlling for shift type and experimental condition. In addition, subjective light information at bedtime and waking was related to both objective and subjective sleep parameters, with data generally indicating poorer sleep with light in the sleeping environment. Questions addressing perception of light in the sleeping environment may provide a crude yet affordable metric of relative photic intensity. Further, as responses relate to sleep outcomes, subjective light information may yield valuable insights regarding mechanisms and outcomes of clinical significance in sleep and circadian research.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2011

Regulation of Meiotic Recombination

Meiotic recombination results in the heritable rearrangement of DNA, primarily through reciprocal exchange between homologous chromosome or gene conversion. In plants these events are critical for ensuring proper chromosome segregation, facilitating DNA repair and providing a basis for genetic diversity. Understanding this fundamental biological mechanism will directly facilitate trait mapping, conventional plant breeding, and development of genetic engineering techniques that will help support the responsible production and conversion of renewable resources for fuels, chemicals, and the conservation of energy (1-3). Substantial progress has been made in understanding the basal recombination machinery, much of which is conserved in organisms as diverse as yeast, plants and mammals (4, 5). Significantly less is known about the factors that regulate how often and where that basal machinery acts on higher eukaryotic chromosomes. One important mechanism for regulating the frequency and distribution of meiotic recombination is crossover interference - or the ability of one recombination event to influence nearby events. The MUS81 gene is thought to play an important role in regulating the influence of interference on crossing over. The immediate goals of this project are to use reverse genetics to identify mutants in two putative MUS81 homologs in the model plant Arabidopsis thaliana, characterize those mutants and initiate a novel forward genetic screen for additional regulators of meiotic recombination. The long-term goal of the project is to understand how meiotic recombination is regulated in higher eukaryotes with an emphasis on the molecular basis of crossover interference. The ability to monitor recombination in all four meiotic products (tetrad analysis) has been a powerful tool in the arsenal of yeast geneticists. Previously, the qrt mutant of Arabidopsis, which causes the four pollen products of male meiosis to remain attached, was developed as a facile system for assaying recombination using tetrad analysis in a higher eukaryotic system (6). This system enabled the measurement of the frequency and distribution of recombination events at a genome wide level in wild type Arabidopsis (7), construction of genetic linkage maps which include positions for each centromere (8), and modeling of the strength and pattern of interference (9). This proposal extends the use of tetrad analysis in Arabidopsis by using it as the basis for assessing the phenotypes of mutants in genes important for recombination and the regulation of crossover interference and performing a novel genetic screen. In addition to broadening our knowledge of a classic genetic problem - the regulation of recombination by crossover interference - this proposal also provides broader impact by: generating pedagogical tools for use in hands-on classroom experience with genetics, building interdisciplinary collegial partnerships, and creating a platform for participation by junior scientists from underrepresented groups. There are three specific aims: (1) Isolate mutants in Arabidopsis MUS81 homologs using T-DNA and TILLING (2) Characterize recombination levels and interference in mus81 mutants (3) Execute a novel genetic screen, based on tetrad analysis, for genes that regulate meiotic recombination

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2012

Instrumentation and Equipment for Three Independent Research Labs

Completed in 2011, Albright's new Science Center includes three independent student and faculty research labs in Biology, Chemistry/Biochemistry, and Physics (separate from teaching labs). Providing independent research facilities, they eliminate disruptions in classrooms and teaching labs, encourage and accommodate increased student interest, and stimulate advanced research. The DOE grant of $369,943 enabled Albright to equip these advanced labs for 21st century science research, with much instrumentation shared among departments. The specialty labs will enable Albright to expand its student-faculty research program to meet growing interest, help attract superior science students, maximize faculty expertise, and continue exceeding its already high rates of acceptance for students applying for postgraduate education or pharmaceutical research positions. Biology instrumentation/equipment supports coursework and independent and collaborative research by students and faculty. The digital shaker, CO 2 and water bath incubators (for controlled cell growth), balance, and micropipettes support cellular biology research in the advanced cell biology course and student-faculty research into heavy metal induction of heat shock proteins in cultured mammalian cells and the development of PCR markers from different populations of the native tree, Franklinia. The gravity convection oven and lyophilizer support research into physical and chemical analysis of floodplain sediments used in assessment of riparian restoration efforts. The Bio-Rad thermocycler permits fast and accurate DNA amplification as part of research into genetic diversity in small mammal populations and how those populations are affected by land-use practices and environmental management. The Millipore water deionizing system and glassware washer provide general support of the independent research lab and ensure quality control of coursework and interdisciplinary research at the intersection of biology, chemistry, and toxicology. Grant purchases support faculty and students working in the areas of plant cellular biology, landscape ecology and wildlife management, wetland restoration, and ecotoxicology of aquatic invertebrates. Chemistry/BioChemistry instrumentation supports a wide range of research and teaching needs. The Dell quad core Xeon processors and Gaussian 09 support computational research efforts of two of our faculty. The computational work of one of these groups is part of close collaboration with one organic chemist and provides support info for the synthetic work of this professor and his students. Computational chemistry studies were also introduced into the physical chemistry laboratory course for junior chemistry concentrators. The AKTA plus system and superdex columns, Thermoscientific Sorvall RC-6 plus superspeed centrifuge, Nanodrop spectrometer, Eppendorf microfuge, Homogenizer and Pipetman pipetters were incorporated into a research project involving purification and characterization of a construct of beta 2-microglobulin by one of our biochemists. The vacuum system (glove box, stand, and pump) makes a significant contribution to the research of our inorganic chemist, the newest department member, working on research projects with four students. The glove box provides the means to carry out their synthetic work in an oxygenless atmosphere. Supporting basic research pursued by faculty and students, the remaining items (refrigerator/freezer units for flammable storage, freezer, refrigerated water bath, rotary evaporator system, vacuum oven, analytical and top-loading balances) were distributed between our biochemistry and chemistry research labs. The Nanodrop spectrometer, Sorvall centrifuge, and rotary evaporator system are used in several junior/senior lab courses in both biochemistry and chemistry. To date, 14 undergraduate research students have been involved in projects using the new instrumentation and equipment provided by this grant. Physics equipment acquired is radically transforming Albright research and teaching capabilities. The two main purchases are an atomic force microscope (AFM) and a scanning tunneling microscope (STM). These two devices allow us to view surfaces at much higher resolution than ever before, even to the level of individual atoms. Already the AFM has been incorporated into courses for advanced physics and biology students, allowing them to view at high resolution material such as carbon nanotubes, cell structure, and proteins. These devices offer possibilities for interdisciplinary collaboration among students and faculty in various departments that have barely begun to be tapped. Additional equipment, such as software, optical tables, lasers, and other support equipment, is also strengthening our research and teaching capabilities in optics-related areas.

99 GENERAL AND MISCELLANEOUS↗
DOE OSTI2011

Assessment of Technologies Used to Characterize Wildlife Populations in the Offshore Environment

Wind energy development in the offshore environment can have both direct and indirect effects on wildlife, yet little is known about most species that use near-shore and offshore waters due in part to the difficulty involved in studying animals in remote, challenging environments. Traditional methods to characterize offshore wildlife populations include shipboard observations. Technological advances have provided researches with an array of technologies to gather information about fauna from afar. This report describes the use and application of radar, thermal and optical imagery, and acoustic detection technologies for monitoring birds, bats, and marine mammals in offshore environments.

Acoustic Monitoring↗
DOE OSTI2013

Acoustic Modeling for Aqua Ventus I off Monhegan Island, ME

The DeepCwind consortium, led by the University of Maine, was awarded funding under the US Department of Energy’s Offshore Wind Advanced Technology Demonstration Program to develop two floating offshore wind turbines in the Gulf of Maine equipped with Goldwind 6 MW direct drive turbines, as the Aqua Ventus I project. The Goldwind turbines have a hub height of 100 m. The turbines will be deployed in Maine State waters, approximately 2.9 miles off Monhegan Island; Monhegan Island is located roughly 10 miles off the coast of Maine. In order to site and permit the offshore turbines, the acoustic output must be evaluated to ensure that the sound will not disturb residents on Monhegan Island, nor input sufficient sound levels into the nearby ocean to disturb marine mammals. This initial assessment of the acoustic output focuses on the sound of the turbines in air by modeling the assumed sound source level, applying a sound propagation model, and taking into account the distance from shore.

Acoustic modeling, offshore wind, Monhegan Island↗
DOE OSTI2013

National Open-ocean Energy Laboratory (Final Technical Report)

Under the authorization provided by Section 634 of the Energy Independence and Security Act of 2007 (P.L. 110-140), in 2009 FAU was awarded U.S. Congressionally Directed Program (CDP) funding through the U.S. Department of Energy (DOE) to investigate and develop technologies to harness the energy of the Florida Current as a source of clean, renewable, base-load power for Florida and the U.S. A second CDP award in 2010 provided additional funding in order to enhance and extend FAU’s activities. These two CDPs in 2009 and 2010 were combined into a single DOE grant, DE-EE0000319, and are the subject of this report. Subsequently, in July 2010 funding was made available under a separate contract, DE-EE0004200. Under that funding, DOE’s Wind and Water Power Program designated FAU’s state of Florida marine renewable energy (MRE) center as the Southeast National Marine Renewable Energy Center (SNMREC). This report discusses SNMREC activities funded by the DE-EE0000319 grant, but will make reference, as appropriate, to activities that require further investigation under the follow-on grant. The concept of extracting energy from the motions of the oceans has a long history. However, implementation on large scales of the technologies to effect renewable energy recovery from waves, tides, and open-ocean currents is relatively recent. DOE’s establishment of SNMREC recognizes a significant potential for ocean current energy recovery associated with the (relatively) high-speed Florida Current, the reach of the Gulf Stream System flowing through the Straits of Florida, between the Florida Peninsula and the Bahamas Archipelago. The proximity of the very large electrical load center of southeast Florida’s metropolitan area to the resource itself makes this potential all the more attractive. As attractive as this potential energy source is, it is not without its challenges. Although the technology is conceptually simple, its design and implementation in a commercially-viable fashion presents a variety of challenges. Beyond the technology itself (and, especially, the effects on the technology of the harsh oceanic environment), it is important to consider the possible environmental impacts of commercial-scale implementation of oceanic energy extraction. Further, because such implementation represents a completely new undertaking, the human resources required do not exist, so education and training programs are critical to eventual success. This project, establishing a national open-ocean energy laboratory, was designed to address each of these three challenges in a flexible framework allowing for adaptive management as the project proceeded. In particular: the technology challenge, including resource assessment, evolved during the project to recognize and address the need for a national testing facility in the ocean for small-scale prototype MRE systems developed by industry; the environmental challenge became formalized and expanded during the permitting process for such a testing facility; and the human resources/societal challenges, both in terms of the need for education and training and in terms of public acceptance of MRE, stimulated a robust outreach program far beyond that originally envisioned at SNMREC. While all of these activities at SNMREC are ongoing, a number of significant milestones (in addition to the contributions listed in the appendices) were achieved under the auspices of this award. These include: Planning and site selection for the first-phase test facility, offshore of Dania Beach, FL, including some equipment for the facility, submission of an Interim Policy Lease Application to the U.S. Department of Interior’s Bureau of Ocean Energy Management (BOEM), and completion of an Environmental Assessment by BOEM and a positive Consistency Determination by the State of Florida; Measurements using acoustic profilers of the current structure and variability in the vicinity of the site under a variety of weather conditions, seasons and time durations; Design and implementation of instrumentation for the first phase of the offshore testing facility, the wet- and top-side data acquisition systems, and shore-based analysis systems; Implementation of a laboratory-scale dynamometer system to test generators of up to 25 kW capacity using real-world (simulated) forcing; Completion of 24 months of (airborne) marine vertebrate surveys and associated analysis of sea turtle offshore activity, marine mammal vocalization research, and ocean current turbine hydrodynamic noise characterization; Development of a secondary-school (nominally grade 10) curriculum about hydrokinetic MRE, “Energy from the Oceans: The New Renewable”, and training of over 200 high-school teachers in its use and in how to educate their colleagues in application of the material in the classroom; Presentations to over 50 interested civic groups in the region on various aspects of MRE in SE Florida A series of public lectures to over 600 residents of south Florida to provide broader education on MRE. Development of an interactive kiosk for installation in local science museums. These, and other accomplishments detailed in this report contribute to a comprehensive ongoing program at the SNMREC to support the affordable, responsible, and achievable commercialization of MRE. Many of the tasks of this award are continued or will be verified with follow-on funding DE-EE0004200, and its goal: the installation of the world’s first offshore ocean current turbine testing and validation capability.

16 TIDAL AND WAVE POWER↗
DOE OSTI2014

Development of Post-Installation Monitoring Capabilities

The development of approaches to harness marine and hydrokinetic energy at large-scale is predicated on the compatibility of these generation technologies with the marine environment. At present, aspects of this compatibility are uncertain. Demonstration projects provide an opportunity to address these uncertainties in a way that moves the entire industry forward. However, the monitoring capabilities to realize these advances are often under-developed in comparison to the marine and hydrokinetic energy technologies being studied. Public Utility District No. 1 of Snohomish County has proposed to deploy two 6-meter diameter tidal turbines manufactured by OpenHydro in northern Admiralty Inlet, Puget Sound, Washington. The goal of this deployment is to provide information about the environmental, technical, and economic performance of such turbines that can advance the development of larger-scale tidal energy projects, both in the United States and internationally. The objective of this particular project was to develop environmental monitoring plans in collaboration with resource agencies, while simultaneously advancing the capabilities of monitoring technologies to the point that they could be realistically implemented as part of these plans. In this, the District was joined by researchers at the Northwest National Marine Renewable Energy Center at the University of Washington, Sea Mammal Research Unit, LLC, H.T. Harvey & Associates, and Pacific Northwest National Laboratory.

16 TIDAL AND WAVE POWER↗
DOE OSTI2012

Evaluating Effects of Stressors from Marine and Hydrokinetic Energy

Potential environmental effects of marine and hydrokinetic (MHK) energy development are not well understood, yet regulatory agencies are required to make decisions in spite of substantial uncertainty about environmental impacts and their long-term consequences. An understanding of risks associated with interactions between MHK installations and aquatic receptors, including animals, habitats, and ecosystems, can help define key uncertainties and focus regulatory actions and scientific studies on interactions of most concern. During FY 2012, Pacific Northwest National Laboratory (PNNL) continued to follow project developments on the two marine and hydrokinetic projects reviewed for Environmental Risk Evaluation System (ERES) screening analysis in FY 2011: a tidal project in the Gulf of Maine using Ocean Renewable Power Company TidGenTM turbines and a wave project planned for the coast of Oregon using Aquamarine Oyster surge devices. The ERES project in FY 2012 also examined two stressor–receptor interactions previously identified through the screening process as being of high importance: 1) the toxicity effects of antifouling coatings on MHK devices on aquatic resources and 2) the risk of a physical strike encounter between an adult killer whale and an OpenHydro turbine blade. The screening-level assessment of antifouling paints and coatings was conducted for two case studies: the Snohomish County Public Utility District No. 1 (SnoPUD) tidal turbine energy project in Admiralty Inlet, Puget Sound, Washington, and the Ocean Power Technologies (OPT) wave buoy project in Reedsport, Oregon. Results suggest minimal risk to aquatic biota from antifouling coatings used on MHK devices deployed in large estuaries or open ocean environments. For the strike assessment of a Southern Resident Killer Whale (SRKW) encountering an OpenHydro tidal turbine blade, PNNL teamed with colleagues from Sandia National Laboratories (SNL) to carry out an analysis of the mechanics and biological consequences of different blade strike scenarios. Results of these analyses found the following: 1) a SRKW is not likely to experience significant tissue injury from impact by an OpenHydro turbine blade; and 2) if whale skin behaves similarly to the materials considered as surrogates for the upper dermal layers of whale skin, it would not be torn by an OpenHydro blade strike. The PNNL/SNL analyses could not provide insight into the potential for more subtle changes to SRKWs from an encounter with a turbine, such as changes in behavior, or inform turbine interactions for other whales or other turbines. These analyses were limited by the available time frame in which results were needed and focused on the mechanical response of whale tissues and bone to blade strike. PNNL proposes that analyses of additional turbine designs and interactions with other marine mammals that differ in size, body conformation, and mass be performed.

13 HYDRO ENERGY↗
DOE OSTI2015

Ecological Monitoring and Compliance Program 2014 Report

The Ecological Monitoring and Compliance Program (EMAC), funded through the U.S. Department of Energy, National Nuclear Security Administration Nevada Field Office (NNSA/NFO, formerly Nevada Site Office), monitors the ecosystem of the Nevada National Security Site (NNSS) and ensures compliance with laws and regulations pertaining to NNSS biota. This report summarizes the program’s activities conducted by National Security Technologies, LLC (NSTec), during calendar year 2014. Program activities included (a) biological surveys at proposed activity sites, (b) desert tortoise compliance, (c) ecosystem monitoring, (d) sensitive plant species monitoring, (e) sensitive and protected/regulated animal monitoring, and (f) habitat restoration monitoring. During 2014, all applicable laws, regulations, and permit requirements were met, enabling EMAC to achieve its intended goals and objectives. Sensitive and protected/regulated species of the NNSS include 42 plants, 1 mollusk, 2 reptiles, 236 birds, and 27 mammals. These species are protected, regulated, or considered sensitive according to state or federal regulations and natural resource agencies and organizations. The desert tortoise (Gopherus agassizii) and the western yellow-billed cuckoo (Coccyzus americanus) are the only species on the NNSS protected under the Endangered Species Act, both listed as threatened. However, only one record of the cuckoo has ever been documented on the NNSS, and there is no good habitat for this species on the NNSS. It is considered a rare migrant. Biological surveys for the presence of sensitive and protected/regulated species and important biological resources on which they depend were conducted for 18 projects. A total of 199.18 hectares (ha) was surveyed for these projects. Sensitive and protected/regulated species and important biological resources found during these surveys included a predator burrow, one sidewinder rattlesnake (Crotalus cerastes), two mating speckled rattlesnakes (Crotalus mitchellii), and several species of cacti. NSTec provided to project managers a written summary report of all survey findings and mitigation recommendations, where applicable. Of the 18 projects on the NNSS, 15 occurred within the range of the threatened desert tortoise. Approximately 2.19 ha of desert tortoise habitat were disturbed. No desert tortoises were accidentally injured or killed by project activities, and no tortoises were killed by vehicles. On 13 occasions, tortoises were moved off the road and out of harm’s way. Six tortoises were found and transmitters attached as part of an approved study to assess impacts of vehicles on tortoises on the NNSS. NSTec biologists continued to monitor 37 juvenile desert tortoises as part of a collaborative effort to study survival and temperament of translocated animals. From 1978 until 2013, there has been an average of 11.2 wildland fires per year on the NNSS with an average of about 83.7 ha burned per fire. There were no wildland fires documented on the NNSS during 2014. Results from the wildland fuel surveys showed a very low risk of wildland fire due to reduced fuel loads caused by limited natural precipitation. Limited reptile trapping and reptile roadkill surveys were conducted to better define species distribution on the NNSS. Sixteen reptiles were trapped representing five species. Combined with data from 2013, 183 road kills were detected, representing 11 snake and 8 lizard species. Selected natural water sources were monitored to assess trends in physical and biological parameters, and one new water source was found. Wildlife use at five water troughs and four radiologically contaminated sumps was documented using motion-activated cameras. As part of the statewide effort to disseminate information throughout the botanical community, NSTec prepared a shape file with site-specific data for all 17 sensitive plants on the NNSS and provided it to the Nevada Natural Heritage Program for inclusion in their statewide database. No field surveys were conducted this year for sensitive plants on the NNSS due to poor growing conditions. Surveys of sensitive and protected/regulated animals during 2014 focused on winter raptors, bats, wild horses (Equus caballus), mule deer (Odocoileus hemionus), desert bighorn sheep (Ovis Canadensis nelsoni), and mountain lions (Puma concolor). Two permanent, long-term winter raptor survey routes were established and sampled in January and February. A total of 27 raptors representing 4 species were observed. The wild horse population increased from 30 to 41, with several yearlings recruiting into the population, possibly due to the death of a mountain lion known to prey on horse foals. Mule deer abundance and density measured with standardized deer surveys was similar to 2013 and appears to be stable. Desert bighorn sheep, including rams, ewes, and lambs, were detected using motion-activated cameras at four water sources. There are plans to conduct helicopter surveys to census the population during September 2015 and then capture and radio-collar up to 20 sheep during November 2015. Over 150 sheep scat samples have been collected for genetic analysis to try to determine how sheep on the NNSS are related to surrounding sheep populations. Information is presented about bird mortalities, Migratory Bird Treaty Act compliance, and a summary of nuisance animals and their control on the NNSS. A total of 93 mountain lion images (i.e., photographs or video clips) were taken during 220,379 camera hours at 16 of 32 sites sampled and another 11,946 images of at least 29 species other than mountain lions were taken as well. A mountain lion telemetry study continued in 2014. NNSS7 was tracked from January 1 to November 15 using a global positioning system satellite transmitter. He consumed 21 mule deer, 17 desert bighorn sheep, 1 juvenile bobcat, and 3 coyotes. Mule deer were primarily taken in the summer and fall. No new mountain lions were captured. A minimum of four adult lions (two males, two females), a subadult male, and three kittens were known to inhabit the NNSS during 2014. Two previously revegetated sites on the NNSS and one on the Tonopah Test Range (TTR) were monitored in 2014. The cover cap on the U-3ax/bl disposal unit, revegetated in 2000, and the 92-Acre Site at the Area 5 Radioactive Waste Management Complex, revegetated in 2011, were the restoration sites monitored on the NNSS. The Corrective Action Unit 407 Rollercoaster RADSAFE site, revegetated in 2000, was the restoration site monitored on the TTR. Plant cover and density were recorded at all sites except U-3ax/bl (qualitative monitoring), and reclamation success standards were evaluated, where applicable.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2016

Informing a Tidal Turbine Strike Probability Model through Characterization of Fish Behavioral Response using Multibeam Sonar Output

One of the most important biological questions facing the marine and hydrokinetic (MHK) energy industry is whether fish and marine mammals that encounter MHK devices are likely to be struck by moving components. For hydrokinetic (HK) devices, i.e., those that generate energy from flowing water, this concern is greatest for large organisms because their increased length increases the probability that they will be struck as they pass through the area of blade sweep and because their increased mass means that the force absorbed if struck is greater and potentially more damaging (Amaral et al. 2015). Key to answering this question is understanding whether aquatic organisms change their swimming behavior as they encounter a device in a way that decreases their likelihood of being struck and possibly injured by the device. Whether near-field or far-field behavior results in general avoidance of or attraction to HK devices is a significant factor in the possible risk of physical contact with rotating turbine blades (Cada and Bevelhimer 2011).

13 HYDRO ENERGY↗
DOE OSTI2017

Measuring changes in ambient noise levels from the installation and operation of a surge wave energy converter in the coastal ocean

Ecosystem impacts resulting from elevated underwater noise levels generated by anthropogenic activities in the coastal ocean are poorly understood and remain difficult to address as a result of a significant gap in knowledge for existing nearshore sound levels. Ambient noise is an important habitat component for marine mammals and fish that use sound for essential functions such as communication, navigation, and foraging. Questions surrounding the amplitudes, frequency distributions, and durations of noise emissions from renewable wave energy conversion (WEC) projects during their construction and operation present concerns for long-term consequences in marine habitats. Oregon’s dynamic nearshore environment presents significant challenges for passive acoustic monitoring that include flow noise contamination from wave orbital motions, turbulence from breaking surf, equipment burial, and fishing pressure from sport and commercial crabbers. This project included 2 techniques for passive acoustic data collection: 1) campaign style deployments of fixed hydrophone lander stations to capture temporal variations in noise levels and 2) a drifting hydrophone system to record spatial variations within the project site. The hydrophone lander deployments were effective and economically feasible for enabling robust temporal measurements of ambient noise levels in a variety of sea state conditions. Limiting factors for the fixed stations included 1) a flow shield mitigation strategy failure in the first deployment resulting in significant wideband data contamination and 2) flow noise contamination of the unshielded sensors restricting valuable analysis to frequencies above 500 Hz for subsequent deployments. Drifting hydrophone measurements were also effective and economically feasible (although logistically challenging in the beginning of the project due to vessel time constraints) providing a spatial distribution of sound levels, comparisons of noise levels in varying levels of vessel traffic during similar sea states, and reducing the frequencies contaminated by flow noise to f < 50 Hz by an effective drifting hydrophone system design strategy. Results from this project can still assist regulatory agencies and WEC developers in permitting and licensing, reducing project costs overall and assisting the economic development of the WEC industry, thus furthering the MHK energy industry and easing the U.S. reliance on foreign oil for energy production. Additionally, results from this project can be used to help inform coastal resource managers and regulatory agencies on existing baseline noise level variability and ecosystem health.

16 TIDAL AND WAVE POWER↗
DOE OSTI2018

Final Report: N-Acylethanolamine metabolism and the acquisition of photoautotrophy during seedling establishment

Research in our labs, supported since 2005 by Basic Energy Sciences, has led to the discovery of a new lipid mediator pathway that influences phytohormone-mediated regulation of plant growth and development—the so-called N-acylethanolamine (NAE) regulatory pathway. This pathway in plants shares conserved metabolic machinery with the endocannabinoid signaling system of vertebrates that regulates a multitude of physiological and behavioral processes in mammals, suggesting that the metabolism of NAEs is an important regulatory feature of eukaryotic biology. Current evidence in plants points to interactions between NAE metabolism, abscisic acid (ABA) signaling and light signaling to modulate seedling establishment and the acquisition of photoautotrophic growth. The proposed research fits well within the mission of Photosynthetic Systems and Physical Biosciences which seek “to understand the processes by which plants, algae and non-medical microbes capture, convert and/or store energy”. The fundamental regulatory processes that govern seedling establishment directly influence the assembly of photosynthetic energy conversion systems in essentially all higher plants. Our main hypothesis is that seedlings coordinate the metabolic depletion of NAEs during seedling establishment through a complex interaction of hydrolysis (by fatty acid amide hydrolase, FAAH) and oxidation (by lipoxygenases, LOX) and that newly-reported oxylipin metabolites of polyunsaturated NAEs help to coordinate seedling development and acquisition of photoautotrophy in response to appropriate environmental cues. Evidence suggests that ethanolmide oxylipins derived from NAEs can reversibly accumulate in seedlings and adjust/arrest seedling establishment and chloroplast development in conjunction with ABA signaling and light-signaling pathways. Our results provide important new information linking the production of small molecule lipid mediators in seedlings to the coordinated development of photoautorophy. While relevant to how plants capture, convert and store energy, this work also extends to the general understanding of acylethanolamides and their bioactivity in eukaryotic organisms. In addition, analytical mass spectrometry methodology developed in this work also helped to demonstrate the identification, quantification and spatial localization of NAEs and other lipids in various plant and animal tissues. Cumulative scholarly output includes 45 publications, 2 U.S. Patents, and 24 invited research seminars. This research funding also supported the training of 2 master’s students, 4 Ph.D. students and 3 postdoctoral scholars, enhancing the human infrastructure of the U.S. science enterprise.

09 BIOMASS FUELS↗
DOE OSTI2020

Coronaviruses: Epidemics and Pandemics

Coronaviruses constitute a large group of viruses that circulate in domestic and wild mammals and birds (human, cat, dog, pig, mouse, rat, bat, cattle, deer, giraffe, llama, sheep, elk, caribou, and birds). Seven of them have made their way into humans. This presentation gives an overview of three coronavirus epidemics with an emphasis on Severe Acute Respiratory Syndrome Coronavirus-2 (SARS CoV-2) which causes coronavirus disease -2019 (COVID-19).

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2020

2020 State of the Science Report, Chapter 3: Collision Risk for Animals around Turbines

The potential for marine animals to encounter and collide with turbines, especially tidal and river turbines, along with the biological, ecological, and regulatory consequences of any such interactions, remain active areas of research and topics of global interest. Uncertainty and knowledge gaps associated with collision risk continue to present challenges within consenting/permitting (hereafter consenting) processes for turbine developments. Consequently, collision risk continues to be the focus of significant research effort, which in recent years has included environmental monitoring of operational devices and arrays. This chapter addresses the overall progress and growth in knowledge across this topic area, and specific progress related to marine mammals, fish, and seabirds. https://tethys.pnnl.gov/publications/state-of-the-science-2020-chapter-3-collision

13 HYDRO ENERGY↗