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F*** workflows: when parts of FAIR are missing
The FAIR principles for scientific data (Findable, Accessible, Interoperable, Reusable) are also relevant to other digital objects such as research software and scientific workflows that operate on scientific data. The FAIR principles can be applied to the data being handled by a scientific workflow as well as the processes, software, and other infrastructure which are necessary to specify and execute a workflow. The FAIR principles were designed as guidelines, rather than rules, that would allow for differences in standards for different communities and for different degrees of compliance. There are many practical considerations which impact the level of FAIR-ness that can actually be achieved, including policies, traditions, and technologies. Because of these considerations, obstacles are often encountered during the workflow lifecycle that trace directly to shortcomings in the implementation of the FAIR principles. Here, we detail some cases, without naming names, in which data and workflows were Findable but otherwise lacking in areas commonly needed and expected by modern FAIR methods, tools, and users. We describe how some of these problems, all of which were overcome successfully, have motivated us to push on systems and approaches for fully FAIR workflows.
Durable Cr-substituted (Ba,Cs)[subscript 1.33](Cr,Ti)[subscript 8]O[subscript 16] hollandite waste f
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Mutations in the proximal binding site and F-loop of AdeJ confer resistance to efflux pump inhibitors
Multidrug efflux is one of the major mechanisms of antibiotic resistance in gram-negative bacteria. Inhibitors of efflux pumps potentiate the activities of antibiotics, and their discovery could lead to new therapeutic options. The AdeIJK pump in Acinetobacter baumannii is a promising target for efflux pump inhibitors (EPIs) due to its high clinical importance and conservation, and several classes of EPIs targeting this and other A. baumannii efflux transporters have been recently reported. However, the mechanisms of action of these EPIs and their resistance liability remain underexplored. Here, we analyzed the impact of site-specific substitutions in the substrate/EPI translocation path of the inner membrane transporter AdeJ on efflux of substrate antibiotics and fluorescent probes and activities of substituted 4,6-diaminoquinoline EPIs. We found that substitutions in amino acid residues located in the entrance cleft (R701) and the flexible loop (E675) of AdeJ lead to resistance specifically against biphenyl-substituted EPIs, whereas the substitution of F178 in the distal binding pocket increased AdeJ sensitivity to certain naphthyl- and biphenyl-substituted EPIs. No major differences in docking scores and poses of substrates and EPIs were observed between the wild type and corresponding AdeJ variants for any of the mutations considered. This study concludes that substrates and EPIs bound along the translocation path of AdeJ participate in its conformational transitions and can either increase or decrease the rate of transport and therefore the efficiency of EPIs.
A Vulnerable, Membrane-Proximal Site in Human Respiratory Syncytial Virus F Revealed by a Prefusion-
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Comparison of Plasma p-tau217 and [ 18 F]FDG-PET for Identifying Alzheimer Disease in People With Early-Onset or Atypical Dementia
Not provided.
Alternative conformations of a major antigenic site on RSV F
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Applications of Porphyrinoid Macrocycles in Molecular Sensing and f-Element Coordination
Conclusion/ future work: UV-Vis supports metal complexation; Optimize crystal growth; Solid state EXAFS experiment.
Sister Rod Destructive Examinations (FY20), Appendix F: Cyclic Integrated Reversible-Bending Fatigue Tests
This report documents work performed under the Spent Fuel and Waste Disposition’s Spent Fuel and Waste Science and Technology program for the US Department of Energy (DOE) Office of Nuclear Energy (NE). This work was performed to fulfill Level 2 Milestone M2SF-21OR010201032, “ORNL High Burnup Confirmatory Demo Sibling Rod Testing Results,” within work package SF-21OR01020103 and is an update to the work reported in M2SF-19ORO010201026 and M2SF-19OR010201028.
MCC On Boarding Section J-1 (Exhibit F) Environmental, Safety & Health Requirements [Slides]
Abstract not provided.
239Pu(n,f) PFNS evaluation: potential release candidate [Slides]
Abstract not provided.
Front-End Engineering Design (FEED) Study for a Carbon Capture Plant Retrofit to a Natural Gas-Fired Gas Turbine Combined Cycle Power Plant (2x2x1 Duct-Fired 758-MWe Facility with F Class Turbines)
A comprehensive front-end engineering design (FEED) study has been undertaken by Bechtel National Inc. (Bechtel) for locating a post-combustion capture and compression (PCC) unit at Panda’s Sherman natural gas–combined cycle (NGCC) power plant in Sherman, Texas. This is described in the unredacted FEED Study report (Attachment 1) with all supporting documents, numbering over 150. The Study Report is publicly available. Sizing of the PCC plant is based on treating an amount of flue gas equivalent to that produced when generating 420 MW, which is approximately 68% of the total flue gas emitted by the NGCC power plant operating at guarantee condition with duct burners off. A reduced power plant capacity factor was used for sizing the PCC plant because the gas turbines at the site often operate at reduced load due to the high penetration of renewable power in the ERCOT region. The cost of carbon capture is primarily driven by capital cost (and therefore is highly sensitive to capacity factor). Sizing the capture unit so that when used it is nearly always operating at full capacity is critical to the economic viability of the proposed investment.
235 U(n,f) PFNS and nu-bar evaluations: first release candidate including validation [Slides]
Abstract not provided.
Sister Rod Destructive Examinations (FY2021) Appendix F: Cyclic Integrated Reversible-Bending Fatigue Tests
As a part of DOE NE High Burnup Spent Fuel Data Project, Oak Ridge National Laboratory (ORNL) is performing destructive examinations (DEs) of high burnup (HBU) (>45 GWd/MTU) spent nuclear fuel (SNF) rods from the North Anna Nuclear Power Station operated by Dominion Energy. The SNF rods, called sister rods or sibling rods, are all HBU and include four different kinds of fuel rod cladding: standard Zircaloy-4 (Zirc-4), low-tin (LT) Zirc-4, ZIRLO, and M5. This appendix documents the status of the ORNL Phase 1 DE activities related to tests of the sister rods using the Cyclic Integrated Reversible-Bending Fatigue Tester (CIRFT) in Phase 1 of the sister rod test program.
Assessing the Origins o f the Helical Instability in Axially Magnetized Liner Implosions.
Abstract not provided.
235 U(n,f) PFNS and nu-bar evaluations: first release candidate including validation [Slides]
Abstract not provided.