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DOE OSTI2022

A Laplace-Domain Circuit Model for Fault and Stability Analysis Considering Unbalanced Topology

For systems subject to unbalanced faults, analytical model building for stability assessment is a challenging task. This letter presents a straightforward modeling approach. A generalized dynamic circuit representation is achieved by use of the Laplacian transform variable s . Here, we translate the voltage and current relationship at the fault location into the relationship of three subsystems. The final circuit model is an interconnected sequence network with impedances in the Laplace domain. This circuit can be directly converted from a steady-state sequence network. This modeling procedure is illustrated by an example case of an induction motor served by a grid through a series compensated line. Electromagnetic transient simulation results demonstrate that sub-synchronous oscillations can be mitigated when a single-line to ground fault is applied at the motor terminal. Stability analysis results based on the dynamic circuit corroborate the simulation results. What's more, the derived circuit effortlessly reveals why unbalance can enhance stability.

42 ENGINEERING↗

DOE OSTI2023

Dynamic Mooring Field Experiment and Design of a Wave Energy Converter Platform Test System

Abstract This study evaluated a multi-catenary spread mooring system design of a mobile ocean test berth for wave energy converters (WECs), the Ocean Sentinel (OS) instrumentation buoy, through dynamic simulation, numerical analysis, and comparison with measured field motion data of the OS off the OR coast. First, the accuracy of the numerical employed model based on a fully-coupled method of the OS and its mooring lines was validated by comparing predicted mooring tensions to the field measurements. Then, the anchor movability, fatigue damage, and extreme mooring tension of the OS mooring system were analyzed to assess survivability. Field test results show that the numerical model provided accurate predictions of mooring tensions even under environmental conditions of strong wind, current, and waves. Factors affecting the accuracy are discussed. One mooring anchor was shown to have moved significantly during the ocean field test. Mooring fatigue damage was calculated for different levels of sea states. Design strengths of the mooring lines were calculated and analyzed.

Engineering↗

DOE OSTI2020

Spin-dependent Pomeron and Odderon in elastic proton–proton scattering

We introduce a new model of near-forward elastic proton-(anti)proton scattering at high energy based on the modern formulation of Pomeron and Odderon in terms of Wilson lines and generalized TMDs (GTMDs). We compute the helicity-dependent elastic amplitudes $\phi$1,2,3,4,5 in this model and study their energy dependence from the nonlinear small-x evolution equations. While both Pomeron and Odderon contribute to helicity-flip processes in general, in the forward limit t = 0 only the double helicity-flip amplitude $\phi$2, dominated by the spin-dependent Odderon, survives. This may effect the extraction of the ρ parameter as well as the total cross section in the LHC energy domain and beyond

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

DOE OSTI2020

Choppy Lite

The existing methodologies for gathering and computing zonal statistics from the combination of a raster image and a shapefile either require advanced programming knowledge in at least one language or the use of proprietary software such as ArcGIS. The software “Choppy Lite” offers several solutions for acquiring zonal statistics that can be used without proprietary software or programming knowledge. This software provides a Docker-based ecosystem, allowing users of any experience level to simply run a single line command in a terminal prompt independent of the operating system. Intermediate to advanced users can import the class provided by the software package into their own Python scripts.

Grant, JoshuaN.↗

DOE OSTI2025

Mechanical Solutions Scan Report

Power lines, poles, and towers are the backbone of the United States (U.S.) electric-power grid. These transmission and distribution networks route electricity from generator to loads. The characteristics of these routes are rapidly changing -- trending towards decentralized renewable generation, electric heating, vehicle charging, and large data-center loads. Coupled with aging infrastructure and the increased frequency of extreme weather events, there is concern about the future reliability and transmission capacity of conductors and adjacent components. This scan report seeks to provide an overview of mechanical solutions to challenges caused by extreme weather events associated with components of transmission and distribution infrastructure, including conductor heat sag, ice accumulation, wind, and wildfire. Many options could increase transmission capacity or reliability, and these are at various stages of technological readiness. Some have only been lab tested, while some have been widely deployed in the U.S. or overseas for decades. The solution categories and providers featured in this report are intended to be comprehensive at the time of publication and to serve as a reference for decision-makers concerned about transmission and distribution reliability. There are two other categories of large, complex solutions, which are not covered in this report: replacing existing conductors with advanced conductors and implementing digital grid enhancing technologies. A separate scan report titled “Advanced Conductor Scan Report,” which discusses advanced carbon-core conductors, was published by the Idaho National Laboratory (INL) in 2023. Information on digital technologies, such as dynamic line ratings, power-flow controllers, and other power electronics and communications-based devices, can be found on the Grid- Enhancing Technologies landing page. Mechanical grid-enhancing technologies, or solutions covered in this report, often do not require full equipment replacement and do not rely on digital components. Mechanical technologies are overlooked because they may be older, simpler, or seemingly “more obvious” than digital or carbon-core technologies. However, it is wise to consider mechanical solutions in a thorough evaluation of grid enhancing technology solutions.

24 - POWER TRANSMISSION AND DISTRIBUTION↗

DOE OSTI2020

Pluto's Ultraviolet Spectrum, Surface Reflectance, and Airglow Emissions

During the New Horizons spacecraft’s encounter with Pluto, the Alice ultraviolet spectrograph conducted a series of observations that detected emissions from both the interplanetary medium (IPM) and Pluto. In the direction of Pluto, the IPM was found to be 133.4 ± 0.6 R at Lyα, 0.24 ± 0.02 R at Lyβ, and <0.10 R at He i 584 Å. We analyzed 3900 s of data obtained shortly before closest approach to Pluto and detect airglow emissions from H i, N i, N ii, N{sub 2}, and CO above the disk of Pluto. We find Pluto’s brightness at Lyα to be 29.3 ± 1.9 R, in good agreement with preencounter estimates. The detection of the N ii multiplet at 1085 Å marks the first direct detection of ions in Pluto’s atmosphere. We do not detect any emissions from noble gases and place a 3σ upper limit of 0.14 R on the brightness of the Ar i 1048 Å line. We compare preencounter model predictions and predictions from our own airglow model, based on atmospheric profiles derived from the solar occultation observed by New Horizons, to the observed brightness of Pluto’s airglow. Although completely opaque at Lyα, Pluto’s atmosphere is optically thin at wavelengths longer than 1425 Å. Consequently, a significant amount of solar far-UV light reaches the surface, where it can participate in space weathering processes. From the brightness of sunlight reflected from Pluto, we find the surface has a reflectance factor (I/F) of 17% between 1400 and 1850 Å. We also report the first detection of a C{sub 3} hydrocarbon molecule, methylacetylene, in absorption, at a column density of ∼5 × 10{sup 15} cm{sup −2}, corresponding to a column-integrated mixing ratio of 1.6 × 10{sup −6}.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2020

Measurements of Effective Optical Depth in the Lyα Forest from the BOSS DR12 Quasar Sample

We measure the effective optical depth in the Lyα forest using 40,035 quasar spectra from the Twelfth Data Release (DR12) of the Baryon Oscillation Spectroscopic Survey of Sloan Digital Sky Survey IV. A rigorous selection based on spectral index and the equivalent width of the C iv emission line is applied to choose seven uniform samples with minimal intrinsic variations across redshifts. Modeling the redshift evolution of the effective optical depth with a power law, ${\tau }_{\mathrm{eff}}={\tau }_{0}{(1+z)}^{\gamma },$ produces ${\tau }_{0}=(5.54\pm 0.64)\times {10}^{-3}$ and $\gamma =3.182\pm 0.074$. The 2.2% precision estimate on γ is dominated by systematic errors, likely arising from the bias and uncertainties in spectral index estimates. Even after incorporating the systematic errors, this work provides the most precise estimates of optical depth parameters to date. Finally, using the reconstructed Lyα forest continuum to directly measure the transmitted flux ratio as a function of redshift, we find deviations of less than 2.5% from the predictions from the global model and no convincing evidence for signal associated with He ii reionization.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2024

XA21-mediated resistance to Xanthomonas oryzae pv. oryzae is dose dependent

The rice receptor kinase XA21 confers broad-spectrum resistance to Xanthomonas oryzae pv. oryzae ( Xoo ), the causal agent of rice bacterial blight disease. To investigate the relationship between the expression level of XA21 and resulting resistance, we generated independent HA-XA21 transgenic rice lines accumulating the XA21 immune receptor fused with an HA epitope tag. Whole-genome sequence analysis identified the T-DNA insertion sites in sixteen independent T0 events. Further, through quantification of the HA-XA21 protein and assessment of the resistance to Xoo strain PXO99 in six independent transgenic lines, we observed that XA21-mediated resistance is dose dependent. In contrast, based on the four agronomic traits quantified in these experiments, yield is unlikely to be affected by the expression level of HA-XA21 . These findings extend our knowledge of XA21-mediated defense and contribute to the growing number of well-defined genomic landing pads in the rice genome that can be targeted for gene insertion without compromising yield.

60 APPLIED LIFE SCIENCES↗

DOE OSTI2024

Comprehensive Genome-Wide Natural Variation and Expression Analysis of Tubby-like Proteins Gene Family in Brachypodium distachyon

The Tubby-like proteins (TLPs) gene family is a group of transcription factors found in both animals and plants. In this study, we identified twelve B. distachyon TLPs, divided into six groups based on conserved domains and evolutionary relationships. We predicted cis-regulatory elements involved in light, hormone, and biotic and abiotic stresses. The expression patterns in response to light and hormones revealed that BdTLP3, 4, 7, and 14 are involved in light responses, and BdTLP1 is involved in ABA responses. Furthermore, BdTLP2, 7, 9, and 13 are expressed throughout vegetative and reproductive stages, whereas BdTLP1, 3, 5, and 14 are expressed at germinating grains and early vegetative development, and BdTLP4, 6, 8, and 10 are expressed at the early reproduction stage. The natural variation in the eleven most diverged B. distachyon lines revealed high conservation levels of BdTLP1-6 to high variation in BdTLP7-14 proteins. Based on diversifying selection, we identified amino acids in BdTLP1, 3, 8, and 13, potentially substantially affecting protein functions. This analysis provided valuable information for further functional studies to understand the regulation, pathways involved, and mechanism of BdTLPs.

Plant Sciences↗

DOE OSTI2024

Multi-Source Machine Learning and Thermoplastics Enhanced Aerostructure Manufacturing (mTEAM)

RTX Technology Research Center (RTRC), together with Collins Aerospace (Collins) and Oak Ridge National Laboratory (ORNL) has developed an Artificial Intelligence (AI) / Machine Learning (ML) guided solution to advance the manufacturing and assembly of high performance and lightweight thermoplastic composite (TPC) aerospace products. The solution aims to lower risk, cost and lead time for induction heating based welding and consolidation processes for TPC structure. The cost and lead time of part and material specific process development for induction welding (IW) and induction consolidation will be reduced by replacing traditional empirical methods with optimization methods that merge AI/ML and physics-based process simulations and process experiments with sensing and controls. TPC-IW process development is empirical in nature, and uncertainties in material & process behavior exist near & far from the induction coil. Physics-based simulations can be leveraged directly for process optimization but can be too computationally expensive to run in high fidelity and real time to do robust process optimization. The key impact of successful TPC induction consolidation and welding is cost & lead time reduction for part & material specific consolidation and welding recipes. This is an enabler for more rapid deployment of TPC structures via joining assembly, which can reduce energy & cost intensive usage of autoclaves & ovens. The solution aimed to advance the U.S. Department of Energy’s interests in using thermoplastics and automation in composite manufacturing for improvement of products for existing markets via increased production speeds, reduced costs, and lowered use of energy. Welded TPC structures can offer significant weight & energy savings for high-value commercial aerospace & industrial applications compared to metal & thermoset composite structures assembled by mechanical fastening and/or adhesive bonding. The project was organized into two Budget Periods. Budget Period 1 (BP1) was 15 months and its goal was to perform ML process optimization framework development & deployment on lab-coupon aerostructure components. A Go/No-Go Review was performed at the end of BP1 to verify fulfilment of key tasks & milestones to justify a Go Decision to move into the next Budget Period. Budget Period 2 (BP2) was 12 months and its goal was the deployment of the ML framework for ML process optimization of pilot industrial scale aerostructure components. The overall project aim was to develop & demonstrate ML-enhanced modeling framework that learns process-property mapping from multiple data sources at different fidelities. During BP1, the team accomplished key tasks & milestones to demonstrate the concept of multi-source ML for TPC aerostructure consolidation and assembly. First, the team completed documentation of induction based TPC heating requirements including baseline metrics to compare measured results against. Next the team completed demonstration of data generation from physics-based simulations for ML surrogate model generation and demonstrated the integration of physics-based simulation data into multi-source AI/ML algorithms. In parallel, the team established the lab-coupon scale induction welding system and completed a process to label and reduce generated data from physics-based simulation and experiments for ML surrogate models to enable multi-source ML model training & testing. To complete BP1, the team integrated physics-based simulation data and experimental data into multi-source ML algorithms. This was based on the team completing ML deployment of the induction welding on a lab system at RTRC and AI/ML deployment on existing induction welding line at Collins. ORNL visited both Collins and RTRC sites to witness the TPC induction welding process. Then, ORNL designed and constructed a new version of their vision-based sensing system better adapted to acquire process signals of the TPC induction welding process for process anomaly and defect detection. In BP2, the team accomplished key tasks & milestones to scale up multi-source ML for TPC aerostructure consolidation and assembly from the lab-coupon scale to the pilot-industrial scale. In BP2, the team demonstrated real time anomaly & defect detection via experiments performed by ORNL & RTRC. The team completed ML-optimization heating trials for TPC induction consolidation at Collins, and the team confirmed pilot industrial scale experimental data from Collins was compatible with the developed ML pipeline from RTRC. The team completed sub-element scale ML process optimization demonstration at RTRC, where the team leveraged RTRC’s robotic TPC welding setup to de-risk the ML process optimization by performing ML analysis of recorded temperatures to account for complex part features. Then, the team applied its ML-derived control strategies and ML process optimization framework at Collins to the pilot-industrial scale on a demo skin-stiffener part representative of a nacelle aerostructure fan cowl section. The key innovation is the AI/ML framework enabling effective process development of high performance, lightweight, energy efficient TPCs for composite aircraft structures.

36 MATERIALS SCIENCE↗

DOE OSTI2023

Aculeaxanthones A–E, new xanthones from the marine-derived fungus Aspergillus aculeatinus WHUF0198

Introduction Dimeric natural products are widespread in plants and microorganisms, which usually have complex structures and exhibit greater bioactivities than their corresponding monomers. In this study, we report five new dimeric tetrahydroxanthones, aculeaxanthones A−E ( 4−8 ), along with the homodimeric tetrahydroxanthone secalonic acid D ( 1 ), chrysoxanthones B and C ( 2 and 3 ), and 4−4’-secalonic acid D ( 9 ), from different fermentation batches of the title fungus. Methods A part of the culture was added to a total of 60 flasks containing 300 ml each of number II fungus liquid medium and culture 4 weeks in a static state at 28˚C. The liquid phase (18 L) and mycelia was separated from the fungal culture by filtering. A crude extract was obtained from the mycelia by ultrasound using acetone. To obtain a dry extract (18 g), the liquid phase combined with the crude extract were further extracted by EtOAc and concentrated in vacuo. The MIC of anaerobic bacteria was examined by a broth microdilution assay. To obtain MICs for aerobic bacteria, the agar dilution streak method recommended in Clinical and Laboratory Standards Institute document (CLSI) M07-A10 was used. Compounds 1−9 was tested against the Bel-7402, A-549 and HCT-116 cell lines according to MTT assay. Results and Discussion The structures of these compounds were elucidated on the base of 1D and 2D NMR and HR-ESIMS data, and the absolute configurations of the new xanthones 4−8 were determined by conformational analysis and time-dependent density functional theory-electronic circular dichroism (TDDFT-ECD) calculations. Compounds 1–9 were tested for cytotoxicity against the Bel-7402, A549, and HCT-116 cancer cell lines. Of the dimeric tetrahydroxanthone derivatives, only compound 6 provided cytotoxicity effect against Bel-7402 cell line (IC50, 1.96 µM). Additionally, antimicrobial activity was evaluated for all dimeric tetrahydroxanthones, including four Gram-positive bacteria including Enterococcus faecium ATCC 19434, Bacillus subtilis 168, Staphylococcus aureus ATCC 25923 and MRSA USA300; four Gram-negative bacteria, including Helicobacter pylori 129, G27, as well as 26,695, and multi drug-resistant strain H. pylori 159, and one Mycobacterium M. smegmatis ATCC 607. However, only compound 1 performed activities against H. pylori G27, H. pylori 26695, H. pylori 129, H. pylori 159, S. aureus USA300, and B. subtilis 168 with MIC values of 4.0, 4.0, 2.0, 2.0, 2.0 and 1.0 μg/mL, respectively.

Wu, Jun↗

DOE OSTI2022

Study of Stark broadening of krypton helium-$\beta$ lines and estimation of electron density and temperature in NIF compressed capsules

Here the National Ignition Facility (NIF) diagnostic instrument manipulator (DIM) - based high resolution (dHIRES) x-ray spectrometer was used to measure the time evolution of the electron density (n e ) and temperature (T e ) in the hot spot of four NIF compressed capsules with 25 ps time resolution during the 'stagnation' phase. The electron density was inferred by comparing the measured Stark broadening of the krypton (Kr) Heβ spectral complex with theoretical calculations that include ion dynamic effects, and the electron temperature was inferred by comparing the measured ratio of the intensity of a dielectronically excited Li-like Kr line to the intensity of the Kr Heβ resonance line with calculations using the spectroscopic collisional radiative atomic model (SCRAM) and CRETIN collisional-radiative models. The inferred, time averaged n e values mainly agree with n e values from neutron diagnostics within uncertainties, but the neutron time-of-flight values of T ion are consistently higher than dHIRES T e values by 200–700 eV. The dHIRES measurements and measurement techniques, method of uncertainty analysis, and discussion of comparisons with measurements from neutron diagnostics are presented.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

DOE OSTI2021

OzDES Reverberation Mapping Programme: the first Mg ii lags from 5 yr of monitoring

ABSTRACT Reverberation mapping is a robust method to measure the masses of supermassive black holes outside of the local Universe. Measurements of the radius–luminosity (R−L) relation using the Mg ii emission line are critical for determining these masses near the peak of quasar activity at z ≈ 1−2, and for calibrating secondary mass estimators based on Mg ii that can be applied to large samples with only single-epoch spectroscopy. We present the first nine Mg ii lags from our 5-yr Australian Dark Energy Survey reverberation mapping programme, which substantially improves the number and quality of Mg ii lag measurements. As the Mg ii feature is somewhat blended with iron emission, we model and subtract both the continuum and iron contamination from the multiepoch spectra before analysing the Mg ii line. We also develop a new method of quantifying correlated spectroscopic calibration errors based on our numerous, contemporaneous observations of F-stars. The lag measurements for seven of our nine sources are consistent with both the H β and Mg ii R−L relations reported by previous studies. Our simulations verify the lag reliability of our nine measurements, and we estimate that the median false positive rate of the lag measurements is $4{{\ \rm per\ cent}}$.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2021

Unraveling the intrinsic atomic physics behind x-ray absorption line shifts in warm dense silicon plasmas

Here, we present a novel free-energy density functional theory (DFT)-based methodology for optical property calculations of warm dense matter to cover a wide range of thermodynamic conditions and photon energies including the entire x-ray range. It uses Mermin–Kohn–Sham density functional theory with exchange-correlation (XC) thermal effects taken into account via a fully temperature dependent generalized gradient approximation XC functional. The methodology incorporates a combination of the ab initio molecular dynamics (AIMD) snapshotted Kubo–Greenwood optic data with a single-atom in simulation cell calculations to close the photon energy gap between the L and K edges and extend the K-edge tail toward many-keV photon energies. This gap arises in the standard scheme due to a prohibitively large number of bands required for the Kubo–Greenwood calculations with AIMD snapshots. Kubo–Greenwood data on snapshots provide an accurate description of optic properties at low photon frequencies slightly beyond the L-edge and x-ray absorption near edges structure (XANES) spectra, while data from periodic calculations with single atoms cover the tail regions beyond the edges. To demonstrate its applicability to mid-Z materials where the standard DFT-based approach is not computationally feasible, we have applied it to opacity calculations of warm dense silicon plasmas. These first-principles calculations revealed a very interesting phenomon of red-to-blue shift in K–L (1s → 2p) and K-edge absorptions along both isotherm and isochore, which are absent in most continuum-lowering models of traditional plasma physics. This new physics phenomenon can be attributed to the underlying competition between the screening of deeply bound core electrons and the screening of outer-shell electrons caused by warm-dense-plasma conditions. We further demonstrate that the ratio of 1s → 2p to the K-edge x-ray absorptions can be used to characterize warm-dense-plasma conditions. Eventually, based on our absorption calculations, we have established a first-principles opacity table (FPOT) for silicon in a wide range of material densities and temperatures.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

DOE OSTI2022

Characterization and Optimization of a Spectral Window for Direct Gaseous Uranium Hexafluoride Enrichment Assay Using Laser-Induced Breakdown Spectroscopy

Through a systematic scanning of 235 U and 238 U emission lines between 280 nm and 745 nm, the optimal emission line for direct gaseous uranium hexafluoride (UF 6 ) enrichment assay using laser-induced breakdown spectroscopy (LIBS) was found. Screening for spectral features that are potentially useful for U isotopic analysis was gauged from the magnitude of the 235 U– 238 U isotopic shift and the signal-to-background ratio of the emission line through a parameter termed ΔSBR 235U–238U . The ΔSBR spectrum shows peaks at wavelength positions where there are strong lines with significant 235 U– 238 U shifts. The screening identified 13 spectral-window candidates, which were down selected based on their overall accuracy in predicting the 235 U enrichment of three UF 6 samples of natural (0.720 atom% 235 U) and low-enriched (4.675 atom% and 9.157 atom% 235 U) grades. The U(I) 646.498 nm emission line, with a determined 235 U– 238 U isotopic shift of -17.7 pm, was found to be the optimal spectral window for direct UF 6 enrichment assay. The root mean square error for enrichment assays on the three natural and low-enriched UF 6 samples, with each sample measured in six replicates, was 0.31% in absolute 235 U content. Each measurement comprised LIBS signals accumulated from 3000 laser shots. In conclusion, the analytical bias and precision were better than 0.5% and 0.3%, respectively, in absolute [ 235 U/( 235 U + 238 U)] ratios. Specific for the two low-enriched UF 6 samples, the relative standard deviations from six replicated measurements were around 2%.

47 OTHER INSTRUMENTATION↗

DOE OSTI2020

Distributed Small-Signal Stability Conditions for Inverter-Based Unbalanced Microgrids

The proliferation of inverter-based generation and advanced sensing, controls, and communication infrastructure have facilitated accelerated deployment of microgrids. A coordinated network of microgrids can maintain reliable power delivery to critical facilities during extreme events. Low-inertia offered by the power-electronics–interfaced energy resources, however, can present significant challenges to ensuring stable operation of the microgrids. In this work, distributed small-signal stability conditions for inverter-based microgrids are developed that involve the droop-controller parameters and the network parameters (e.g. line impedances, loads). The distributed closed-form parametric stability conditions derived in this paper can be verified in a computationally efficient manner, facilitating reliable design and operations of networks of microgrids. Dynamic phasor models have been used to capture the effects of electromagnetic transients. Furthermore, numerical results are presented, along with PSCAD simulations, to validate the analytical stability conditions. Effects of design choices, such as the conductor types, and inverter sizes, on the small-signal stability of inverter-based microgrids are investigated to derive useful engineering insights.

24 POWER TRANSMISSION AND DISTRIBUTION↗

DOE OSTI2022

Genetic mapping and prediction of flowering time and plant height in a maize Stiff Stalk MAGIC population

Abstract The Stiff Stalk heterotic pool is a foundation of US maize seed parent germplasm and has been heavily utilized by both public and private maize breeders since its inception in the 1930s. Flowering time and plant height are critical characteristics for both inbred parents and their test crossed hybrid progeny. To study these traits, a 6-parent multiparent advanced generation intercross population was developed including maize inbred lines B73, B84, PHB47 (B37 type), LH145 (B14 type), PHJ40 (novel early Stiff Stalk), and NKH8431 (B73/B14 type). A set of 779 doubled haploid lines were evaluated for flowering time and plant height in 2 field replicates in 2016 and 2017, and a subset of 689 and 561 doubled haploid lines were crossed to 2 testers, respectively, and evaluated as hybrids in 2 locations in 2018 and 2019 using an incomplete block design. Markers were derived from a practical haplotype graph built from the founder whole genome assemblies and genotype-by-sequencing and exome capture-based sequencing of the population. Genetic mapping utilizing an update to R/qtl2 revealed differing profiles of significant loci for both traits between 635 of the DH lines and 2 sets of 570 and 471 derived hybrids. Genomic prediction was used to test the feasibility of predicting hybrid phenotypes based on the per se data. Predictive abilities were highest on direct models trained using the data they would predict (0.55–0.63), and indirect models trained using per se data to predict hybrid traits had slightly lower predictive abilities (0.49–0.55). Overall, this finding is consistent with the overlapping and nonoverlapping significant quantitative trait loci found within the per se and hybrid populations and suggests that selections for phenology traits can be made effectively on doubled haploid lines before hybrid data is available.

Genetics & Heredity↗

DOE OSTI2024

Implementation of an impurity diagnostic suite on the Pegasus-III experiment

A suite of diagnostics used to assess impurity content and dynamics has been updated, upgraded, and installed on the Pegasus-III Experiment. Typical plasma parameters during local helicity injection start-up are τ shot ~10 ms, n e ~ 1 × 10 19 m –3 , and T e ~ 50 eV. The deployed diagnostics are compatible with this modest temperature and density regime and provide species identification, source localization, and estimation of radiation losses. Impurity species are determined by recording time-evolving, single line-of-sight spectra at 1.25 kfps using a SPRED (Survey, Poor Resolution, Extended Domain) vacuum ultraviolet spectrometer. SPRED is equipped with 450 g/mm grating, giving a spectral resolution of 0.33 nm and a spectral range from ~10 to 110 nm, useful to identify light impurity species in this temperature and density range. An absolutely calibrated spectrometer that collects light from the plasma at R tan = 15.9 cm and Δt ≥ 2 ms is used as a visible survey spectrometer and for continuum measurements. The radiated power from the plasma is estimated with a photodiode-based diagnostic. Two 16-channel absolute extreme ultraviolet diode arrays are placed behind pinhole apertures, resulting in 32 lines of sight at Z = 0, with a spatial resolution of 2–3 cm and a time response of 60 kHz. A photometrically calibrated collinear D α /near infrared filtered photodiode-based system measures the D α emission and around 1040 nm. All these instruments have been designed to suppress electromagnetic interference from megawatt-class switching power supplies.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗