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At least 487 records · Page 27

The MolSSI QCArchive project: An open-source platform to compute, organize, and share quantum chemistry data

The Molecular Sciences Software Institute's (MolSSI) Quantum Chemistry Archive (QCArchive) project is an umbrella name that covers both a central server hosted by MolSSI for community data and the Python-based software infrastructure that powers automated computation and storage of quantum chemistry (QC) results. The MolSSI-hosted central server provides the computational molecular sciences community a location to freely access tens of millions of QC computations for machine learning, methodology assessment, force-field fitting, and more through a Python interface. Facile, user-friendly mining of the centrally archived quantum chemical data also can be achieved through web applications found at the website. The software infrastructure can be used as a standalone platform to compute, structure, and distribute hundreds of millions of QC computations for individuals or groups of researchers at any scale. The QCArchiveInfrastructure is open-source (BSD-3C), code repositories can be found at github, and releases can be downloaded via PyPI and Conda. This article is categorized under: Electronic Structure Theory > Ab Initio Electronic Structure Methods Software > Quantum Chemistry Data Science > Computer Algorithms and Programming

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

libwfa: Wavefunction analysis tools for excited and open‐shell electronic states

Abstract An open‐source software library for wavefunction analysis, libwfa, provides a comprehensive and flexible toolbox for post‐processing excited‐state calculations, featuring a hierarchy of interconnected visual and quantitative analysis methods. These tools afford compact graphical representations of various excited‐state processes, provide detailed insight into electronic structure, and are suitable for automated processing of large data sets. The analysis is based on reduced quantities, such as state and transition density matrices (DMs), and allows one to distill simple molecular orbital pictures of physical phenomena from intricate correlated wavefunctions. The implemented descriptors provide a rigorous link between many‐body wavefunctions and intuitive physical and chemical models, for example, exciton binding, double excitations, orbital relaxation, and polyradical character. A broad range of quantum‐chemical methods is interfaced with libwfa via a uniform interface layer in the form of DMs. This contribution reviews the structure of libwfa and highlights its capabilities by several representative use cases. This article is categorized under: Software > Quantum Chemistry Theoretical and Physical Chemistry > Spectroscopy

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Fragme∩t: An Open‐Source Framework for Multiscale Quantum Chemistry Based on Fragmentation

Fragment-based quantum chemistry offers a means to circumvent the nonlinear computational scaling of conventional electronic structure calculations, by partitioning a large calculation into smaller subsystems then considering the many-body interactions between them. Variants of this approach have been used to parameterize classical force fields and machine learning potentials, applications that benefit from interoperability between quantum chemistry codes. However, there is a dearth of software that provides interoperability yet is purpose-built to handle the combinatorial complexity of fragment-based calculations. To fill this void we introduce “Fragme∩t”, an open-source software application that provides a tool for community validation of fragment-based methods, a platform for developing new approximations, and a framework for analyzing many-body interactions. Fragme∩t includes algorithms for automatic fragment generation and structure modification, and for distance- and energy-based screening of the requisite subsystems. Checkpointing, database management, and parallelization are handled internally and results are archived in a portable database. Interfaces to various quantum chemistry engines are easy to write and exist already for Q-Chem, PySCF, xTB, Orca, CP2K, MRCC, Psi4, NWChem, GAMESS, and MOPAC. Applications reported here demonstrate parallel efficiencies around 96% on more than 1000 processors but also showcase that the code can handle large-scale protein fragmentation using only workstation hardware, all with a codebase that is designed to be usable by non-experts. Fragme∩t conforms to modern software engineering best practices and is built upon well established technologies including Python, SQLite, and Ray. The source code is available under the Apache 2.0 license.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

ExaWind: Open‐source CFD for hybrid‐RANS/LES geometry‐resolved wind turbine simulations in atmospheric flows

Abstract Predictive high‐fidelity modeling of wind turbines with computational fluid dynamics, wherein turbine geometry is resolved in an atmospheric boundary layer, is important to understanding complex flow accounting for design strategies and operational phenomena such as blade erosion, pitch‐control, stall/vortex‐induced vibrations, and aftermarket add‐ons. The biggest challenge with high‐fidelity modeling is the realization of numerical algorithms that can capture the relevant physics in detail through effective use of high‐performance computing. For modern supercomputers, that means relying on GPUs for acceleration. In this paper, we present ExaWind, a GPU‐enabled open‐source incompressible‐flow hybrid‐computational fluid dynamics framework, comprising the near‐body unstructured grid solver Nalu‐Wind, and the off‐body block‐structured‐grid solver AMR‐Wind, which are coupled using the Topology Independent Overset Grid Assembler. Turbine simulations employ either a pure Reynolds‐averaged Navier–Stokes turbulence model or hybrid turbulence modeling wherein Reynolds‐averaged Navier–Stokes is used for near‐body flow and large eddy simulation is used for off‐body flow. Being two‐way coupled through overset grids, the two solvers enable simulation of flows across a huge range of length scales, for example, 10 orders of magnitude going from O(μm) boundary layers along the blades to O(10 km) across a wind farm. In this paper, we describe the numerical algorithms for geometry‐resolved turbine simulations in atmospheric boundary layers using ExaWind. We present verification studies using canonical flow problems. Validation studies are presented using megawatt‐scale turbines established in literature. Additionally presented are demonstration simulations of a small wind farm under atmospheric inflow with different stability states.

17 WIND ENERGY↗

Measurement of electrons from open heavy-flavor hadron decays in Au+Au collisions at $ \sqrt{s_{\textrm{NN}}} $ = 200 GeV with the STAR detector

We report a new measurement of the production of electrons from open heavy-flavor hadron decays (HFEs) at mid-rapidity (|y| < 0.7) in Au+Au collisions at $ \sqrt{s_{\textrm{NN}}} $ = 200 GeV. Invariant yields of HFEs are measured for the transverse momentum range of 3.5 < p T < 9 GeV/c in various configurations of the collision geometry. The HFE yields in head-on Au+Au collisions are suppressed by approximately a factor of 2 compared to that in p + p collisions scaled by the average number of binary collisions, indicating strong interactions between heavy quarks and the hot and dense medium created in heavy-ion collisions. Comparison of these results with models provides additional tests of theoretical calculations of heavy quark energy loss in the quark-gluon plasma.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Real-time dynamics of the Schwinger model as an open quantum system with Neural Density Operators

Ab-initio simulations of multiple heavy quarks propagating in a Quark-Gluon Plasma are computationally difficult to perform due to the large dimension of the space of density matrices. This work develops machine learning algorithms to overcome this difficulty by approximating exact quantum states with neural network parametrisations, specifically Neural Density Operators. As a proof of principle demonstration in a QCD-like theory, the approach is applied to solve the Lindblad master equation in the 1 + 1d lattice Schwinger Model as an open quantum system. Neural Density Operators enable the study of in-medium dynamics on large lattice volumes, where multiple-string interactions and their effects on string-breaking and recombination phenomena can be studied. Thermal properties of the system at equilibrium can also be probed with these methods by variationally constructing the steady state of the Lindblad master equation. Scaling of this approach with system size is studied, and numerical demonstrations on up to 32 spatial lattice sites and with up to 3 interacting strings are performed.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Effective interactions of the open bosonic string via field theory

Abstract We describe a method to extract an effective Lagrangian description for open bosonic strings, at zero transcendentality. The method relies on a particular formulation of its scattering amplitudes derived from color-kinematics duality. More precisely, starting from a (DF) 2 + YM quantum field theory, we integrate out all the massive degrees of freedom to generate an expansion in the inverse string tensionα′. We explicitly compute the Lagrangian terms through$$ \mathcal{O} $$ O (α′ 4 ), and target the sector of operators proportional toF 4 to all orders inα′.

Physics↗

Corners and islands in the S-matrix bootstrap of the open superstring

We bootstrap the Veneziano superstring amplitude in 10 dimensions from the bottom-up. Starting with the most general maximally supersymmetric Yang-Mills EFT, we input information about the lowest-lying massive states, which we assume contribute via tree-level exchanges to the 4-point amplitude. We show the following: (1) if there is only a single state at the lowest mass, it must be a scalar. (2) Assuming a string-inspired gap between the mass of this scalar and any other massive states, the allowed region of Wilson coefficients has a new sharp corner where the Veneziano amplitude is located. (3) Upon fixing the next massive state to be a vector, the EFT bounds have a one-parameter family of corners; these would correspond to models with linear Regge trajectories of varying slopes, one of which is the open superstring. (4) When the ratio between the massive scalar coupling and the tr F 4 coefficient is fixed to its string value, the spin and mass of the second massive state is determined by the bootstrap and the Veneziano amplitude is isolated on a small island in parameter space. Finally, we compare with other recent bootstraps approaches, both the pion model and imposing Regge-inspired maximal spin constraints.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Transverse momentum broadening of a jet in quark-gluon plasma: an open quantum system EFT

We utilize the technology of open quantum systems in conjunction with the recently developed effective field theory for forward scattering to address the question of massless jet propagation through a weakly-coupled quark-gluon plasma in thermal equilibrium. We discuss various possible hierarchies of scales that may appear in this problem, by comparing thermal scales of the plasma with relevant scales in the effective field theory. Starting from the Lindblad equation, we derive and solve a master equation for the trans- verse momentum distribution of a massless quark jet, at leading orders both in the strong coupling and in the power counting of the effective field theory. Markovian approximation is justified in the weak coupling limit. Using the solution to the master equation, we study the transverse momentum broadening of a jet as a function of the plasma temperature and the time of propagation. We discuss the physical origin of infrared sensitivity that arises in the solution and a way to handle it in the effective field theory formulation. We suspect that the final measurement constraint can only cut-off leading infrared singularities and the solution to the Markovian master equation resums a logarithmic series. This work is a stepping stone towards understanding jet quenching and jet substructure observables on both light and heavy quark jets as probes of the quark-gluon plasma.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Color-kinematics dual representations of one-loop matrix elements in the open-superstring effective action

Abstract Theα ′ -expansion of string theory provides a rich set of higher-dimension operators, indexed byζvalues, which can be used to study color-kinematics duality and the double copy. These two powerful properties, actually first noticed in tree-level string amplitudes, simplify the construction of both gauge and gravity amplitudes. However, their applicability and limitations are not fully understood. We attempt to construct a set of color-kinematics dual numerators at one loop and four points for insertions of operator combinations corresponding to the lowest fourζ 2 -free operator insertions from the open superstring:ζ 3 ,ζ 5 ,$$ {\zeta}_3^2 $$ ζ 3 2 , andζ 7 . We succeed in finding a representation for the first three in terms of box, triangle, and bubble numerators. In the case ofζ 7 we find an obstruction to a fully color-dual representation related to the bubble-on-external-leg type diagrams. We discuss two paths around this obstruction, both of which signal an incompatability between color-kinematics duality and manifesting certain desired properties. Using the constructed color-dual numerators, we find two different Bern-Carrasco-Johansson double copies that produce candidate closed-string-insertion numerators. Both approaches to the double copy match the kinematics of the cuts, with relative normalization set by either summing over both double copies including degeneracy or by including an explicit prefactor on the double-copy numerator definitions.

Physics↗

Measurement of prompt open-charm production cross sections in proton-proton collisions at $$ \sqrt{s} $$ = 13 TeV

The production cross sections for prompt open-charm mesons in proton-proton collisions at a center-of-mass energy of 13 TeV are reported. The measurement is performed using a data sample collected by the CMS experiment corresponding to an integrated luminosity of 29 nb-1. The differential production cross sections of the D *± , D ± , and D 0 $(\bar{D}^0)$ mesons are presented in ranges of transverse momentum and pseudorapidity 4 < pT < 100 GeV and |η| < 2.1, respectively. The results are compared to several theoretical calculations and to previous measurements.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Dissipation in open holography

We exploit the holographic realization of a conformal theory coupled to an external bath realized via a double trace deformation and its gravity dual in terms of transparent boundary conditions in order to map out some basic dissipative properties of this simple open holographic system. In particular, we determine the energy transmission coefficient across the boundary, discover a novel duality relating weak and strong coupling to the external bath, and quantify the dissipation in the system by working out the quasi normal modes.

AdS-CFT correspondence↗

Microalgae to biofuels through hydrothermal liquefaction: Open-source techno-economic analysis and life cycle assessment

Hydrothermal liquefaction is a promising conversion technology in algae biofuel research due to its ability to agnostically convert proteins, carbohydrates, and lipids to biocrude. The high-temperature conditions that define this conversion process require the material to maintain a subcritical liquid state, which complicates the assessment of accurate thermochemical properties due to the required pressure. To clarify this issue, this work compares the estimated performance of algal hydrothermal liquefaction between different thermodynamic models. A process model was developed in Aspen Plus from a robust assessment of current literature. Techno-economic assessment and life-cycle assessment metrics are derived from this model and used as key performance indicators. The baseline fuel price contribution of hydrothermal liquefaction is $0.45 per liter gasoline equivalent. Independently decreasing the temperature from 350 °C to 260 °C while maintaining yield reduces the conversion cost by 19%, illustrating the importance of understanding the high-temperature thermodynamics of the system. Different thermodynamic property models can vary fuel conversion cost results by $0.07 per liter gasoline equivalent. The baseline global warming potential is +23 g CO 2 eq MJ -1 and the net energy ratio is 0.30. Environmental metrics beyond global warming potential and net energy ratio are also discussed for the first time. Uncertainties in conversion performance are bounded through a scenario analysis that manipulates parameters such as product yield and nutrient recycle to produce a range of economic and environmental metrics. The report is supplemented with an open source model to support future hydrothermal liquefaction assessments and accelerate the development of commercial-scale systems.

09 BIOMASS FUELS↗

Open-cycle thermochemical energy storage for building space heating: Practical system configurations and effective energy density

Salt-hydrate thermochemical materials (TCM) are promising candidates for energy storage systems for building space heating due to their high theoretical energy density and the need for low regeneration temperature. However, water vapor is required to drive the hydration process of the TCM reactor, which poses a challenge during winter when water vapor is typically scarce. Using indoor air directly lowers the building's humidity to an unconformable level in practice, while the cold outdoor air contains limited moisture. Here we consider different integration strategies for open-cycle TCM reactors in buildings and develop a model to simulate their thermal performance across diverse buildings and climates, specifically for building space heating. The potential energy densities and the levelized cost of storage of the TCM reactor are evaluated in practical scenarios to demonstrate the load-shifting potential of TCM systems for heating applications. We use a strontium chloride (SrCl 2 )-based composite as the baseline and explore the impact of various reactor and material changes to the energy density and levelized cost of storage.

25 ENERGY STORAGE↗

A dynamic thermal algal growth model for pilot-scale open-channel raceways

Here this study describes the makeup of and results from a simulation consisting of a lumped thermal model integrated with a dynamic algae growth model to simulate the microalgae productivity of an open-channel raceway cultivation system. The thermal model considers the dynamic effects of weather, light absorption, convective heat transfer, radiation heat transfer, conductive heat transfer, thermal capacitance, and water control strategies. The dynamic algae growth model solves a set of ordinary differential equations consisting of growth functions dependent on incident radiation, temperature, nutrient availability, basal metabolism, and losses due to dark- and photo-respiration. Relative errors in the predicted ash-free dry weight of Nannochloropsis oceanica are 12.5%, -6.1%, and 4.4% for three separate replicates of cultivation cycles (~4.2 m 2 ) performed at AzCATI during the ATP 3 Unified Field Studies in Fall, Spring, and Summer. This research demonstrates that thermal modeling is an essential contributor to the validation of microalgae growth models.

09 BIOMASS FUELS↗

An integrated modeling framework with open architecture for phase field simulation of multi-component alloys

An integrated modeling framework (PanPhaseField) has been developed, which enables a direct and fast coupling between CALPHAD calculations and large-scale phase field simulations for multi-component alloys. Further, it adopts an open architecture allowing for integration of user-defined phase field models in a plug-and-play manner by taking full advantage of the user-friendly graphical interface of Pandat software. The developed modeling platform becomes an enabling tool that can be used to simulate the evolution of spatially varying microstructures of industrial complex alloys for various engineering applications.

36 MATERIALS SCIENCE↗

HTR solver: An open-source exascale-oriented task-based multi-GPU high-order code for hypersonic aerothermodynamics

In this study, the open-source Hypersonics Task-based Research (HTR) solver for hypersonic aerothermodynamics is described. The physical formulation of the code includes thermochemical effects induced by high temperatures (vibrational excitation and chemical dissociation). The HTR solver uses high-order TENO-based spatial discretization on structured grids and efficient time integrators for stiff systems, is highly scalable in GPU-based supercomputers as a result of its implementation in the Regent/Legion stack, and is designed for direct numerical simulations of canonical hypersonic flows at high Reynolds numbers. Additionally, the performance of the HTR solver is tested with benchmark cases including inviscid vortex advection, low- and high-speed laminar boundary layers, inviscid one-dimensional compressible flows in shock tubes, supersonic turbulent channel flows, and hypersonic transitional boundary layers of both calorically perfect gases and dissociating air.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

ELSI — An open infrastructure for electronic structure solvers

Routine applications of electronic structure theory to molecules and periodic systems need to compute the electron density from given Hamiltonian and, in case of non-orthogonal basis sets, overlap matrices. System sizes can range from few to thousands or, in some examples, millions of atoms. Different discretization schemes (basis sets) and different system geometries (finite non-periodic vs. infinite periodic boundary conditions) yield matrices with different structures. The ELectronic Structure Infrastructure (ELSI) project provides an open-source software interface to facilitate the implementation and optimal use of high-performance solver libraries covering cubic scaling eigensolvers, linear scaling density-matrix-based algorithms, and other reduced scaling methods in between. In this paper, we present recent improvements and developments inside ELSI, mainly covering (1) new solvers connected to the interface, (2) matrix layout and communication adapted for parallel calculations of periodic and/or spin-polarized systems, (3) routines for density matrix extrapolation in geometry optimization and molecular dynamics calculations, and (4) general utilities such as parallel matrix I/O and JSON output. The ELSI interface has been integrated into four electronic structure code projects (DFTB+, DGDFT, FHI-aims, SIESTA), allowing us to rigorously benchmark the performance of the solvers on an equal footing. Based on results of a systematic set of large-scale benchmarks performed with Kohn–Sham density-functional theory and density-functional tight-binding theory, we identify factors that strongly affect the efficiency of the solvers, and propose a decision layer that assists with the solver selection process. As a result, we describe a reverse communication interface encoding matrix-free iterative solver strategies that are amenable, e.g., for use with planewave basis sets.

97 MATHEMATICS AND COMPUTING↗