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NASA NTRS2002

Development of a Two-Wheel Contingency Mode for the MAP Spacecraft

The Microwave Anisotropy Probe (MAP) is a follow-on mission to the Cosmic Background Explorer (COBE), and is currently collecting data from its orbit near the second Sun-Earth libration point. Due to limited mass, power, and financial resources, a traditional reliability concept including fully redundant components was not feasible for MAP. Instead, the MAP design employs selective hardware redundancy in tandem with contingency software modes and algorithms to improve the odds of mission success. One direction for such improvement has been the development of a two-wheel backup control strategy. This strategy would allow MAP to position itself for maneuvers and collect science data should one of its three reaction wheels fail. Along with operational considerations, the strategy includes three new control algorithms. These algorithms would use the remaining attitude control actuators-thrusters and two reaction wheels-in ways that achieve control goals while minimizing adverse impacts on the functionality of other subsystems and software.

Starin, Scott R.↗

DOE OSTI2021

SCOPe: improvements to the structural classification of proteins – extended database to facilitate variant interpretation and machine learning

Abstract The Structural Classification of Proteins—extended (SCOPe, https://scop.berkeley.edu) knowledgebase aims to provide an accurate, detailed, and comprehensive description of the structural and evolutionary relationships amongst the majority of proteins of known structure, along with resources for analyzing the protein structures and their sequences. Structures from the PDB are divided into domains and classified using a combination of manual curation and highly precise automated methods. In the current release of SCOPe, 2.08, we have developed search and display tools for analysis of genetic variants we mapped to structures classified in SCOPe. In order to improve the utility of SCOPe to automated methods such as deep learning classifiers that rely on multiple alignment of sequences of homologous proteins, we have introduced new machine-parseable annotations that indicate aberrant structures as well as domains that are distinguished by a smaller repeat unit. We also classified structures from 74 of the largest Pfam families not previously classified in SCOPe, and we improved our algorithm to remove N- and C-terminal cloning, expression and purification sequences from SCOPe domains. SCOPe 2.08-stable classifies 106 976 PDB entries (about 60% of PDB entries).

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2023

Adaptive Ensemble Refinement of Protein Structures in High Resolution Electron Microscopy Density Maps with Radical Augmented Molecular Dynamics Flexible Fitting

Recent advances in cryo-electron microscopy (cryo-EM) have enabled modeling macromolecular complexes that are essential components of the cellular machinery. The density maps derived from cryo-EM experiments are often integrated with manual, knowledge or artificial intelligence driven, and physics-guided computational methods to build, fit, and refine molecular structures. Going beyond a single stationary- structure determination scheme, it is becoming more common to interpret the experimental data with an ensemble of models, which contributes to an average observation. Hence, there is a need to decide on the quality of an ensemble of protein structures on-the-fly, while refining them against the density maps. Here, we introduce such an adaptive decision making scheme during the molecular dynamics flexible fitting (MDFF) of biomolecules. Using RADICAL-Cybertools, and the new RADICAL augmented MDFF implementation (R-MDFF) is examined in high-performance computing environments for refinement of two protein systems, Adenylate Kinase and Carbon Monoxide Dehydrogenase. For the test cases, use of multiple replicas in flexible fitting with adaptive decision making in R-MDFF improves the overall correlation to the density by 40% relative to the refinements of the brute-force MDFF. The improvements are particularly significant at high, 2 - 3 Å, map resolutions. More importantly, the ensemble model captures key features of biologically relevant molecular dynamics that is inaccessible to a single-model interpretation. Finally, the pipeline is applicable to systems of growing sizes, which is demonstrated using ensemble refinement of capsid proteins from Chimpanzee adenovirus. The overhead for decision making remaining low and robust to computing environments. The software is publicly available on GitHub and includes a short user guide to install the R-MDFF on different computing environments, from local Linux based workstations to High Performance Computing (HPC) environments.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

DOE OSTI2024

Microscopic understanding of the effects of impurities in low RRR SRF cavities

The SRF community has shown that introducing certain impurities into high-purity niobium can improve quality factors and accelerating gradients. We question why some impurities improve RF performance while others hinder it. The purpose of this study is to characterize the impurities of niobium coupons with a low residual resistance ratio (RRR) and correlate these impurities with the RF performance of low RRR cavities so that the mechanism of impurity-based improvements can be better understood and improved upon. The combination of RF testing, temperature mapping, frequency vs temperature analysis, and materials studies reveals a microscopic picture of why low RRR cavities experience low BCS resistance behavior more prominently than their high RRR counterparts. We evaluate how differences in the mean free path, grain structure, and impurity profile affect RF performance. The results of this study have the potential to unlock a new understanding on SRF materials and enable the next generation of high Q/high gradient surface treatments.

43 PARTICLE ACCELERATORS↗

DOE OSTI2024

Microscopic Understanding of the Effects of Impurities in Low RRR SRF Cavities

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

NASA NTRS1965

Computer programs for the geomagnetic field Final report

Spherical-harmonic expansion - least squares program for improving parameter precision and statistical program for field mapping

LEAST SQUARES METHOD↗

NASA NTRS1973

A study of the utilization of ERTS-1 data from the Wabash River Basin

The author has identified the following significant results. In soil association mapping, computerized analysis of ERTS-1 MSS data has yielded images which will prove useful in the ongoing Cooperative Soil Survey program, involving the Soil Conservation Service of USDA and other state and local agencies. In the present mode of operation, a soil survey for a county may take up to 5 years to be completed. Results indicate that a great deal of soils information can be extracted from ERTS-1 data by computer analysis. This information is expected to be very valuable in the premapping conference phase of a soil survey, resulting in more efficient field operations during the actual mapping. In the earth surface features mapping effort it was found that temporal data improved the classification accuracy of forest classification in Tippecanoe County, Indiana. In water resources study a severe scanner look angle effect was observed in the aircraft scanner data of a test lake which was not present in ERTS-1 data of the same site. This effect was greatly accentuated by surface roughness caused by strong winds. Quantitative evaluation of urban features classification in ERTS-1 data was obtained. An 87.1% test accuracy was obtained for eight categories in Marion County, Indiana.

Landgrebe, D. A.↗

NASA NTRS1993

Issues in NASA program and project management. Special Report: 1993 conference

This volume is the seventh in an ongoing series on aerospace project management at NASA. Articles in this volume cover the 1993 Conference: perspectives in NASA program/project management; the best job in aerospace; improvements in project management at NASA; strategic planning...mapping the way to NASA's future; new NASA procurement initiatives; international cooperation; and industry, government and university partnership. A section on resources for NASA managers rounds out the publication.

Hoffman, ED↗

NASA NTRS1997

Laser Scanning System for Pressure and Temperature Paints

Acquiring pressure maps of aerodynamic surfaces is very important for improving and validating the performance of aerospace vehicles. Traditional pressure measurements are taken with pressure taps embedded in the model surface that are connected to transducers. While pressure taps allow highly accurate measurements to be acquired, they do have several drawbacks. Pressure taps do not give good spatial resolution due to the need for individual pressure tubes, compounded by limited space available inside models. Also, building a model proves very costly if taps are needed because of the large amount of labor necessary to drill, connect and test each one. The typical cost to install one tap is about $200. Recently, a new method for measuring pressure on aerodynamic surfaces has been developed utilizing a technology known as pressure sensitive paints (PSP). Using PSP, pressure distributions can be acquired optically with high spatial resolution and simple model preparation. Flow structures can be easily visualized using PSP, but are missed using low spatial resolution arrays of pressure taps. PSP even allows pressure distributions to be found on rotating machinery where previously this has been extremely difficult or even impossible. The goal of this research is to develop a laser scanning system for use with pressure sensitive paints that allows accurate pressure measurements to be obtained on various aerodynamic surfaces ranging from wind tunnel models to high speed jet engine compressor blades.

Sullivan, John↗

NASA NTRS1997

Laser Scanning System for Pressure and Temperature Paints

Sullivan, John↗

NASA NTRS2000

The SHADOZ Data Base: History, Archive Web Guide, and Sample Climatologies

SHADOZ (Southern Hemisphere Additional Ozonesonde) is a project to augment and archive ozonesonde data from ten tropical and subtropical ozone stations. Started in 1998 by NASA's Goddard Space Flight Center and other US and international co-investigators, SHADOZ is an important tool for tropospheric ozone research in the equatorial region. The rationale for SHADOZ is to: (1) validate and improve remote sensing techniques (e.g., the Total Ozone Mapping Spectrometer (TOMS) satellite) for estimating tropical ozone, (2) contribute to climatology and trend analyses of tropical ozone and (3) provide research topics to scientists and educate students, especially in participating countries. SHADOZ is envisioned as a data service to the global scientific community by providing a central public archive location via the internet: http://code9l6.gsfc.nasa.gov/Data_services/shadoz. While the SHADOZ website maintains a standard data format for the archive, it also informs the data users on the differing stations' preparation techniques and data treatment. The presentation navigates through the SHADOZ website to access each station's sounding data and summarize each station's characteristics. Since the start of the project in 1998, the SHADOZ archive has accumulated over 600 ozonesonde profiles and received over 30,000 outside data requests. Data also includes launches from various SHADOZ supported field campaigns, such as, the Indian Ocean Experiment (INDOEX), Sounding of Ozone and Water in the Equatorial Region (SOWER) and Aerosols99 Atlantic Cruise. Using data from the archive, sample climatologies and profiles from selected stations and campaigns will be shown.

White, J. C.↗

NASA NTRS2004

Topographic Evidence for Eruptive Style Changes and Magma Evolution of Small Plains-style Volcanoes on Earth and Mars

Topographic profiles and surface characteristics of small (5 - 25 km diameter) plains-style shield volcanoes on the eastern Snake River Plain (ESRP) provide a method to evaluate eruptive processes and magmatic evolution on Martian volcanic plains. The ESRP is an ideal place to observe Mars-like volcanic features where hundreds of small monogenetic basaltic shields dominate the volcanic-sedimentary depositional sequence, and numerous planetary analogues are evident: coalescent mafic shields, hydromagmatic explosive eruptions, the interaction of lava flows with surficial water and glacial ice, and abundant eolian sand and loess. Single flows cannot be correlated over great distances, and are spatially restricted. These relations are useful for planetary exploration when inferring volcanic evolutionary patterns in lava plains represented by numerous eruptive vents. High spatial resolution imagery and digital topographic data for Mars from MOC, MOLA, and THEMIS is allowing for improvements in the level of detail of stratigraphic mapping of fields of small (< 25 km in diameter) volcanoes as well as studies of the morphological characteristics of individual volcanoes. In order to compare Mars and Earth volcanic features, elevation data from U.S.G.S. 10-meter digital elevation models (DEMs) and high-precision GPS field measurements are used in this study to generate approx. 20m spacing topographic profiles from which slope and surface morphology can be extracted. Average ESRP flank and crater slopes are calculated using 100 - 200 m spacing for optimum comparison to MOLA data, and to reduce the effects of surface irregularities.

Hughes, S. S.↗

NASA NTRS2006

Comparison of Two IRI plasmasphere Extensions with GPS-TEC Observations

Comparisons of two model results with Global Positioning System GPS-TEC measurements have been carried out for different latitudinal, solar activity, magnetic activity, diurnal and seasonal conditions. The models evaluated are the Global Core Plasma Model (GCPM-2000) and the IRI extension with Russian plasmasphere model (IRI*).Data of 23 observatories providing GPS-TEC and ionosonde data have been used. It is shown that IRI* plasmasphere electron density is greater than GCPM results by an order of magnitude at 6370 km altitude (one Earth's radius) with this excess growing to 2-3 orders of magnitude towards the GPS satellite altitude of 20000 km. Another source of model and GPS-TEC differences is a way of selection of the F2 layer peak parameters driving the models either with ITU-R (former CCIR) maps or ionosonde observations. Plasmasphere amendment to IRI improves accuracy of TEC model predictions because the plasmasphere contribution to the total TEC varies from 10% by daytime under quiet magnetic conditions to more than 50% by night under stormy conditions.

Gulyaeva, T. L.↗

NASA NTRS2010

Detailed Analysis of the Intra-Ejecta Dark Plains of Caloris Basin, Mercury

The Caloris basin on Mercury is floored by light-toned plains and surrounded by an annulus of dark-toned material interpreted to be ejecta blocks and smooth, dark, ridged plains. Strangely, preliminary crater counts indicate that these intra-ejecta dark plains are younger than the light-toned plains within the Caloris basin. This would imply a second, younger plains emplacement event, possibly involving lower albedo material volcanics, which resurfaced the original ejecta deposit. On the other hand, the dark plains may be pre-Caloris light plains covered by a thin layer of dark ejecta. Another alternative to the hypothesis of young, dark volcanism is the possibility that previous crater counts have not thoroughly distinguished between superposed craters (fresh) and partly-buried craters (old) and therefore have not accurately determined the ages of the Caloris units. This abstract outlines the tasks associated with a new mapping project of the Caloris basin, intended to improve our knowledge of the geology and geologic history of the basin, and thus facilitate an understanding of the thermal evolution of this region of Mercury.

Buczkowski, Debra L.↗

NASA NTRS2012

An Automated Algorithm to Screen Massive Training Samples for a Global Impervious Surface Classification

An algorithm is developed to automatically screen the outliers from massive training samples for Global Land Survey - Imperviousness Mapping Project (GLS-IMP). GLS-IMP is to produce a global 30 m spatial resolution impervious cover data set for years 2000 and 2010 based on the Landsat Global Land Survey (GLS) data set. This unprecedented high resolution impervious cover data set is not only significant to the urbanization studies but also desired by the global carbon, hydrology, and energy balance researches. A supervised classification method, regression tree, is applied in this project. A set of accurate training samples is the key to the supervised classifications. Here we developed the global scale training samples from 1 m or so resolution fine resolution satellite data (Quickbird and Worldview2), and then aggregate the fine resolution impervious cover map to 30 m resolution. In order to improve the classification accuracy, the training samples should be screened before used to train the regression tree. It is impossible to manually screen 30 m resolution training samples collected globally. For example, in Europe only, there are 174 training sites. The size of the sites ranges from 4.5 km by 4.5 km to 8.1 km by 3.6 km. The amount training samples are over six millions. Therefore, we develop this automated statistic based algorithm to screen the training samples in two levels: site and scene level. At the site level, all the training samples are divided to 10 groups according to the percentage of the impervious surface within a sample pixel. The samples following in each 10% forms one group. For each group, both univariate and multivariate outliers are detected and removed. Then the screen process escalates to the scene level. A similar screen process but with a looser threshold is applied on the scene level considering the possible variance due to the site difference. We do not perform the screen process across the scenes because the scenes might vary due to the phenology, solar-view geometry, and atmospheric condition etc. factors but not actual landcover difference. Finally, we will compare the classification results from screened and unscreened training samples to assess the improvement achieved by cleaning up the training samples. Keywords:

Tan, Bin↗

NASA NTRS2012

Vegetation Phenology Metrics Derived from Temporally Smoothed and Gap-filled MODIS Data

Smoothed and gap-filled VI provides a good base for estimating vegetation phenology metrics. The TIMESAT software was improved by incorporating the ancillary information from MODIS products. A simple assessment of the association between retrieved greenup dates and ground observations indicates satisfactory result from improved TIMESAT software. One application example shows that mapping Nectar Flow Phenology is tractable on a continental scale using hive weight and satellite vegetation data. The phenology data product is supporting more researches in ecology, climate change fields.

Tan, Bin↗

NASA NTRS2014

GRAIL Refinements to Lunar Seismic Structure

Gravity field measurements are perhaps the most numerous of the indirect observations relevant to the Moon's internal structure. Multiple recent missions have mapped the global lunar gravity field, each one improving upon the resolution of the last. The details of the Moon's deepest structure, including the parameters that define the lunar core, however, were still largely unaddressed by pre-GRAIL gravity measurements, which were not high enough resolution to resolve the tidal coefficients at a sufficient degree of accuracy. Current constraints on core size and state arise from other indirect measurements, including lunar laser ranging, magnetic induction studies, and analyses of elemental abundances in depth-derived mare basalts. These inferences vary widely, but when considered together with structure models derived from the seismic data gathered during the Apollo missions, a schematic of the lunar interior containing a partially molten deepest mantle layer overlying molten outer and solid inner core layers was obtained. Seismology provides the most direct constraints on the variables that govern the dynamic properties of the body. However, the GRAIL mission's high-resolution measurements of the lunar gravity field are being used to constrain the interior structure of the Moon using a "crust to core" approach. GRAIL's constraints on crustal thickness, mantle structure, core radius and stratification, and core state (solid vs. molten) therefore complement seismic investigations. This work focuses on expanding our knowledge of the Moon's internal structure using joint gravity and seismic analyses, which will improve constraints on the deep lunar mantle and core.

Weber, Renee C.↗

NASA NTRS2016

Design and Analysis of Map Relative Localization for Access to Hazardous Landing Sites on Mars

Human and robotic planetary lander missions require accurate surface relative position knowledge to land near science targets or next to pre-deployed assets. In the absence of GPS, accurate position estimates can be obtained by automatically matching sensor data collected during descent to an on-board map. The Lander Vision System (LVS) that is being developed for Mars landing applications generates landmark matches in descent imagery and combines these with inertial data to estimate vehicle position, velocity and attitude. This paper describes recent LVS design work focused on making the map relative localization algorithms robust to challenging environmental conditions like bland terrain, appearance differences between the map and image and initial input state errors. Improved results are shown using data from a recent LVS field test campaign. This paper also fills a gap in analysis to date by assessing the performance of the LVS with data sets containing significant vertical motion including a complete data set from the Mars Science Laboratory mission, a Mars landing simulation, and field test data taken over multiple altitudes above the same scene. Accurate and robust performance is achieved for all data sets indicating that vertical motion does not play a significant role in position estimation performance.

Lander Vision System↗