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At least 487 records · Page 27

Brain segmentation and the generation of cortical surfaces

This paper describes methods for white matter segmentation in brain images and the generation of cortical surfaces from the segmentations. We have developed a system that allows a user to start with a brain volume, obtained by modalities such as MRI or cryosection, and constructs a complete digital representation of the cortical surface. The methodology consists of three basic components: local parametric modeling and Bayesian segmentation; surface generation and local quadratic coordinate fitting; and surface editing. Segmentations are computed by parametrically fitting known density functions to the histogram of the image using the expectation maximization algorithm [DLR77]. The parametric fits are obtained locally rather than globally over the whole volume to overcome local variations in gray levels. To represent the boundary of the gray and white matter we use triangulated meshes generated using isosurface generation algorithms [GH95]. A complete system of local parametric quadratic charts [JWM+95] is superimposed on the triangulated graph to facilitate smoothing and geodesic curve tracking. Algorithms for surface editing include extraction of the largest closed surface. Results for several macaque brains are presented comparing automated and hand surface generation. Copyright 1999 Academic Press.

NASA Discipline Neuroscience↗

NASA Tech Briefs, October 2003

Topics covered include: Cryogenic Temperature-Gradient Foam/Substrate Tensile Tester; Flight Test of an Intelligent Flight-Control System; Slat Heater Boxes for Thermal Vacuum Testing; System for Testing Thermal Insulation of Pipes; Electrical-Impedance-Based Ice-Thickness Gauges; Simulation System for Training in Laparoscopic Surgery; Flasher Powered by Photovoltaic Cells and Ultracapacitors; Improved Autoassociative Neural Networks; Toroidal-Core Microinductors Biased by Permanent Magnets; Using Correlated Photons to Suppress Background Noise; Atmospheric-Fade-Tolerant Tracking and Pointing in Wireless Optical Communication; Curved Focal-Plane Arrays Using Back-Illuminated High-Purity Photodetectors; Software for Displaying Data from Planetary Rovers; Software for Refining or Coarsening Computational Grids; Software for Diagnosis of Multiple Coordinated Spacecraft; Software Helps Retrieve Information Relevant to the User; Software for Simulating a Complex Robot; Software for Planning Scientific Activities on Mars; Software for Training in Pre-College Mathematics; Switching and Rectification in Carbon-Nanotube Junctions; Scandia-and-Yttria-Stabilized Zirconia for Thermal Barriers; Environmentally Safer, Less Toxic Fire-Extinguishing Agents; Multiaxial Temperature- and Time-Dependent Failure Model; Cloverleaf Vibratory Microgyroscope with Integrated Post; Single-Vector Calibration of Wind-Tunnel Force Balances; Microgyroscope with Vibrating Post as Rotation Transducer; Continuous Tuning and Calibration of Vibratory Gyroscopes; Compact, Pneumatically Actuated Filter Shuttle; Improved Bearingless Switched-Reluctance Motor; Fluorescent Quantum Dots for Biological Labeling; Growing Three-Dimensional Corneal Tissue in a Bioreactor; Scanning Tunneling Optical Resonance Microscopy; The Micro-Arcsecond Metrology Testbed; Detecting Moving Targets by Use of Soliton Resonances; and Finite-Element Methods for Real-Time Simulation of Surgery.

Source record↗

Toward Improved Predictions of Slender Airframe Aerodynamics Using the F-16XL Aircraft

A coordinated project has been underway to improve computational fluid dynamics predictions of slender airframe aerodynamics. The work is focused on two flow conditions and leverages a unique flight data set obtained with an F-16XL aircraft. These conditions, a low-speed high angle-of-attack case and a transonic low angle-of-attack case, were selected from a prior prediction campaign wherein the computational fluid dynamics failed to provide acceptable results. In this paper, the background, objectives, and approach to the current project are presented. The work embodies predictions from multiple numerical formulations that are contributed from multiple organizations, and the context of this campaign to other multicode, multi-organizational efforts is included. The relevance of this body of work toward future supersonic commercial transport concepts is also briefly addressed.

Luckring, James M.↗

Cloud-Based Orchestration of a Model-Based Power and Data Analysis Toolchain

The proposed Europa Mission concept contains many engineering and scientific instruments that consume varying amounts of power and produce varying amounts of data throughout the mission. System-level power and data usage must be well understood and analyzed to verify design requirements. Numerous cross-disciplinary tools and analysis models are used to simulate the system-level spacecraft power and data behavior. This paper addresses the problem of orchestrating a consistent set of models, tools, and data in a unified analysis toolchain when ownership is distributed among numerous domain experts. An analysis and simulation environment was developed as a way to manage the complexity of the power and data analysis toolchain and to reduce the simulation turnaround time. A system model data repository is used as the trusted store of high-level inputs and results while other remote servers are used for archival of larger data sets and for analysis tool execution. Simulation data passes through numerous domain-specific analysis tools and end-to-end simulation execution is enabled through a web-based tool. The use of a cloud-based service facilitates coordination among distributed developers and enables scalable computation and storage needs, and ensures a consistent execution environment. Configuration management is emphasized to maintain traceability between current and historical simulation runs and their corresponding versions of models, tools and data.

Post, Ethan↗

Data Preservation for Cosmology

We describe the needs and opportunities for preserving cosmology datasets and simulations, and facilitating their joint analysis beyond the lifetime of individual projects. We recommend that DOE fund a new cosmology data archive center to coordinate this work across the multiple DOE computing facilities.

79 ASTRONOMY AND ASTROPHYSICS↗

Structural Dynamic/CFD Interaction for Computation of Vertical Tail Buffet

The multi-disciplinary problem of tail buffeting is solved using three sets of equations. The first set is the unsteady, compressible, full Navier Stokes equations which are used for obtaining the flow-field vector and the aerodynamic loads. The second set is the coupled aeroelastic equations which are used for obtaining the bending and torsional deflections of the tail. The third set is the grid-displacement equations which are used for updating the grid coordinates due to the tail deflections. For the computational applications a sharp-edged delta wing of aspect ratio one and a rectangular vertical tail of aspect ratio one placed in the plane of geometric symmetry behind the wing are considered. The configuration is pitched at a critical angle of attack (alpha = 38 deg.) which produces asymmetric, vortex-breakdown flow of the delta wing primary vortices. The results show the effects of coupled and uncoupled bending-torsional responses and the effects of the Reynolds number.

Kandil, Osama A.↗

Application of a numerically generated orthogonal coordinate system to the solution of inviscid axisymmetric supersonic flow over blunt bodies

A numerically generated orthogonal coordinate system (with the body surface and shock wave as opposite boundaries) was applied with a time asymptotic method to obtain steady flow solutions for axisymmetric inviscid flow over several blunt bodies including spheres, paraboloids, ellipsoids, hyperboloids, hemisphere cylinders, spherically blunted cones, and a body with a concavity in the stagnation region. Comparisons with experimental data and with the results of other computational methods are discussed. The numerically generated orthogonal coordinate system is described and applications of the method to complex body shapes, particularly those with concave regions, are discussed.

Hamilton, H. H., II↗

Global mean sea surface computation using GEOS 3 altimeter data

A mean sea surface map has been determined for the global ocean areas between +62 deg and -62 deg latitude using GEOS 3 altimeter data. A grid of laser reference orbits computed using the GEM 10B gravity model has been used to orient the altimeter data in a center of mass coordinate system. The density of the altimeter tracks has enabled the computation of the sea surface heights above the reference ellipsoid on 1 deg x 1 deg grid in most of the oceanic areas. In the northwest Atlantic the dense coverage has enabled computations on a 0.25 deg x 0.25 deg grid. Comparisons of the global surface with an independently computed mean sea surface based upon SEASAT altimeter data indicate an rms agreement of a little over a meter. Comparisons of the regional solution in the northwest Atlantic with SEASAT profiles indicate a precision of a few decimeters in this surface. An analysis of the global crossover differences has indicated the possibility of a timing error in the altimeter data. Timing bias values of within 0.5 msec of 9.2 msec for 1975 and within 0.6 msec of 18.7 msec for 1976 have been recovered from an analysis of the altimeter data.

Marsh, J. G.↗

Numerical solutions of reactive fluid flows during postignition transients in hybrid rocket systems.

A computational method has been developed for the study of the post-ignition transients in hybrid rocket systems. The particular system chosen consisted of a gaseous oxidizer flowing within a tube of solid fuel, resulting in heterogeneous combustion. With the appropriate assumptions, two-dimensional, time-dependent conservation equations were derived for the reacting gas phase, and for the solid phase, in a cylindrical coordinate system. These were then programmed for numerical computation, using two implicit finite-difference schemes, the Lax-Wendroff scheme for the gas phase, and the Crank-Nicolson scheme for the solid phase. Appropriate initial and boundary conditions were represented, including heat and mass conservation at the interface between gas and solid. Initially, no attempt was made to relate the recession rate at the surface to the surface temperature, or to include heat transfer by radiation. A simple case was selected for preliminary calculations, with aluminum and oxygen as fuel and oxidizer, and aluminum oxide as the product.

Hung, W. S. Y.↗

Self-adaptive difference method for the effective solution of computationally complex problems of boundary layer theory

An implicit difference procedure for the solution of equations for a chemically reacting hypersonic boundary layer is described. Difference forms of arbitrary error order in the x and y coordinate plane were used to derive estimates for discretization error. Computational complexity and time were minimized by the use of this difference method and the iteration of the nonlinear boundary layer equations was regulated by discretization error. Velocity and temperature profiles are presented for Mach 20.14 and Mach 18.5; variables are velocity profiles, temperature profiles, mass flow factor, Stanton number, and friction drag coefficient; three figures include numeric data.

Schoenauer, W.↗

Multigrid, Fractional-Step Computation Of Flow

Speed of computer code solving three-dimensional Navier-Stokes equations of flow of incompressible fluid by fractional-step method increased significantly by use of multigrid procedures. In method, equations solved on general nonorthogonal curvilinear coordinate grid, using volume fluxes. At each time step, computations performed in two fractional steps. In first step, equations of conservation of momentum solved by use of gradient of pressure from previous time step via explicit approximate-factorization method, yielding approximate flow field that does not satisfy equation of conservation of mass. In second step, discrete Poisson-like equation with Neumann-type boundary conditions, formed by combining equations of conservation of momentum and mass, solved iteratively.

Kwak, Dochan↗

Feasibility study of a single, elliptical heliocentric Earth-Mars trajectory

The initial intent of this design project was to evaluate the existence and feasibility of a single elliptical heliocentric Earth/Mars trajectory. This trajectory was constrained to encounter Mars twice in its orbit, within a time interval of 15 to 180 Earth days between encounters. The single ellipse restriction was soon found to be prohibitive for reasons shown later. Therefore, the approach taken in the design of the round-trip mission to Mars was to construct single-leg trajectories which connected two planets on two prescribed dates. Three methods of trajectory design were developed. Method 1 is an eclectic approach and employs Gaussian Orbit Determination (Method 1A) and Lambert-Euler Preliminary Orbit Determination (Method 1B) in conjunction with each other. Method 2 is an additional version of Lambert's Solution to orbit determination, and both a coplanar and a noncoplanar solution were developed within Method 2. In each of these methods, the fundamental variables are two position vectors and the time between the position vectors. In all methods, the motion was considered Keplerian motion and the reference frame origin was located at the sun. Perturbative effects were not considered in Method 1. The feasibility study of round-trip Earth/Mars trajectories maintains generality by considering only heliocentric trajectory parameters and planetary approach conditions. The coordinates and velocity components of the planets, for the standard epoch J2000, were computed from an approximate set of osculating elements by the procedure outlined in an ephemeris of coordinates.

Blake, M.↗

A unifying framework for rigid multibody dynamics and serial and parallel computational issues

A unifying framework for various formulations of the dynamics of open-chain rigid multibody systems is discussed. Their suitability for serial and parallel processing is assessed. The framework is based on the derivation of intrinsic, i.e., coordinate-free, equations of the algorithms which provides a suitable abstraction and permits a distinction to be made between the computational redundancy in the intrinsic and extrinsic equations. A set of spatial notation is used which allows the derivation of the various algorithms in a common setting and thus clarifies the relationships among them. The three classes of algorithms viz., O(n), O(n exp 2) and O(n exp 3) or the solution of the dynamics problem are investigated. Researchers begin with the derivation of O(n exp 3) algorithms based on the explicit computation of the mass matrix and it provides insight into the underlying basis of the O(n) algorithms. From a computational perspective, the optimal choice of a coordinate frame for the projection of the intrinsic equations is discussed and the serial computational complexity of the different algorithms is evaluated. The three classes of algorithms are also analyzed for suitability for parallel processing. It is shown that the problem belongs to the class of N C and the time and processor bounds are of O(log2/2(n)) and O(n exp 4), respectively. However, the algorithm that achieves the above bounds is not stable. Researchers show that the fastest stable parallel algorithm achieves a computational complexity of O(n) with O(n exp 4), respectively. However, the algorithm that achieves the above bounds is not stable. Researchers show that the fastest stable parallel algorithm achieves a computational complexity of O(n) with O(n exp 2) processors, and results from the parallelization of the O(n exp 3) serial algorithm.

Fijany, Amir↗

Surface fitting three-dimensional bodies

The geometry of general three-dimensional bodies is generated from coordinates of points in several cross sections. Since these points may not be smooth, they are divided into segments and general conic sections are curve fit in a least-squares sense to each segment of a cross section. The conic sections are then blended in the longitudinal direction by fitting parametric cubic-spline curves through coordinate points which define the conic sections in the cross-sectional planes. Both the cross-sectional and longitudinal curves may be modified by specifying particular segments as straight lines and slopes at selected points. Slopes may be continuous or discontinuous and finite or infinite. After a satisfactory surface fit has been obtained, cards may be punched with the data necessary to form a geometry subroutine package for use in other computer programs. At any position on the body, coordinates, slopes and second partial derivatives are calculated. The method is applied to a blunted 70 deg delta wing, and it was found to generate the geometry very well.

Dejarnette, F. R.↗

Linearized ray-trace analysis

A new, coordinate-free version of the exact ray-trace equations for optical systems consisting of conic reflecting, refracting and reference surfaces is presented. These equations are differentiated to obtain closed-form optical sensitivity dyadics. For computation, the sensitivities are evaluated in a single global coordinate frame and combined in linearized ray-trace matrix difference equations that propagate the rays and the sensitivities from element to element. One purpose of this analysis is to create optical models that can be directly integrated with models of the instrument structure and control systems for dynamic simulation.

Redding, David C.↗

Probing Particle Impingement in Boilers Using High-Performance Computing with Parallel CPUs and GPUs

The major goals of the project are to calculate and analyze particle impingement within boilers, quantify effects of particulates in boilers, and predict damage rates of boilers under different cycling modes. Collectively, these initiatives develop insight into existing coal plant challenges using advanced modeling tools, particularly those leveraging high-performance computing resources. High-performance CFD computing forms a central theme in this project that will employ a high degree of coordination and communication between these initiatives to realize a final, rigorously sound, and validated computational capability upon completion. These results will create a holistic, comprehensive, systems-level assessment of damage rates under different cycling modes. Together, these objectives will develop critical insight into damage mechanisms in existing coal plant challenges for accurately and efficiently assessing operating performance in fossil energy power plants.

20 FOSSIL-FUELED POWER PLANTS↗

Accelerating defect predictions in semiconductors using graph neural networks

First-principles computations reliably predict the energetics of point defects in semiconductors but are constrained by the expense of using large supercells and advanced levels of theory. Machine learning models trained on computational data, especially ones that sufficiently encode defect coordination environments, can be used to accelerate defect predictions. Here, we develop a framework for the prediction and screening of native defects and functional impurities in a chemical space of group IV, III–V, and II–VI zinc blende semiconductors, powered by crystal Graph-based Neural Networks (GNNs) trained on high-throughput density functional theory (DFT) data. Using an innovative approach of sampling partially optimized defect configurations from DFT calculations, we generate one of the largest computational defect datasets to date, containing many types of vacancies, self-interstitials, anti-site substitutions, impurity interstitials and substitutions, as well as some defect complexes. We applied three types of established GNN techniques, namely crystal graph convolutional neural network, materials graph network, and Atomistic Line Graph Neural Network (ALIGNN), to rigorously train models for predicting defect formation energy (DFE) in multiple charge states and chemical potential conditions. We find that ALIGNN yields the best DFE predictions with root mean square errors around 0.3 eV, which represents a prediction accuracy of 98% given the range of values within the dataset, improving significantly on the state-of-the-art. We further show that GNN-based defective structure optimization can take us close to DFT-optimized geometries at a fraction of the cost of full DFT. The current models are based on the semi-local generalized gradient approximation-Perdew–Burke–Ernzerhof (PBE) functional but are highly promising because of the correlation of computed energetics and defect levels with higher levels of theory and experimental data, the accuracy and necessity of discovering novel metastable and low energy defect structures at the PBE level of theory before advanced methods could be applied, and the ability to train multi-fidelity models in the future with new data from non-local functionals. The DFT-GNN models enable prediction and screening across thousands of hypothetical defects based on both unoptimized and partially optimized defective structures, helping identify electronically active defects in technologically important semiconductors.

Rahman, Md Habibur (ORCID:000000027705984X)↗

Computation of unsteady separation using Lagrangian procedures

The interaction between increased knowledge of unsteady separation processes and computational techniques is examined, emphasizing the use of Lagrangian coordinates. Examples include boundary layer solutions of two-dimensional unsteady flows, and separation from rotating and translating spheres. Advances in Lagrangian techniques for the Navier-Stokes equations are illusrated by means of high resolution random-walk computations of the impulsively started circular cylinder.

Van Dommelen, L. L.↗