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At least 487 records · Page 27

Computational design of mechanically coupled axle-rotor protein assemblies

Natural molecular machines contain protein components that undergo motion relative to each other. Designing such mechanically constrained nanoscale protein architectures with internal degrees of freedom is an outstanding challenge for computational protein design. Here we explore the de novo construction of protein machinery from designed axle and rotor components with internal cyclic or dihedral symmetry. We find that the axle-rotor systems assemble in vitro and in vivo as designed. Using cryo–electron microscopy, we find that these systems populate conformationally variable relative orientations reflecting the symmetry of the coupled components and the computationally designed interface energy landscape. These mechanical systems with internal degrees of freedom are a step toward the design of genetically encodable nanomachines.

Science & Technology - Other Topics↗

Effects of spacecraft reflections on RF interferometer position location accuracy

This report describes one of three study tasks related to the application of an RF interferometer aboard a low-orbiting spacecraft to determine the location of ground-based transmitters. Computer modeling was used to estimate the error in the measured signal angle-of-arrival caused by reflection and diffraction off the spacecraft. Existing computer codes (NEC-BSC) were modified and used to determine the perturbation, due to the spacecraft, in the phase difference between two interferometer antennas, suspended on either side of the spacecraft. This phase perturbation was found as a function of the angle-of-arrival of the signal from a far-field source. The spacecraft antennas were assumed to be circularly polarized with a cardioid pattern. It was found that the perturbation was as much 12.4 deg within the + or - 60 deg field-of-view. This suggests that phase calibration and correction of phase measurements are essential for precision position location using this technique.

Wallace, R. G.↗

APC: A New Code for Atmospheric Polarization Computations

A new polarized radiative transfer code Atmospheric Polarization Computations (APC) is described. The code is based on separation of the diffuse light field into anisotropic and smooth (regular) parts. The anisotropic part is computed analytically. The smooth regular part is computed numerically using the discrete ordinates method. Vertical stratification of the atmosphere, common types of bidirectional surface reflection and scattering by spherical particles or spheroids are included. A particular consideration is given to computation of the bidirectional polarization distribution function (BPDF) of the waved ocean surface.

surface reflection↗

Using solar availability factors to adjust cool-wall energy savings for shading and reflection by neighboring buildings

The extent to which a solar-reflective “cool” wall can reduce a building's cooling load in summer or increase its heating load in winter scales with the wall's incident solar radiation, or solar availability. We assess how the solar availability at the wall of a central (modeled) building is affected by a neighboring wall across an urban canyon by calculating the central wall's solar availability factor (SAF), defined as the ratio of sunlight incident on the central wall in the presence of the neighboring wall to that incident in the absence of the neighboring wall. Cool-wall heating, ventilation, and air conditioning (HVAC) energy savings simulated for an isolated central building (no neighbors) can be multiplied by SAFs to account for interactions with neighboring walls. Monthly values of SAF were evaluated in 17 climates across the United States, including three in California, for north, east, south, and west central walls, over a wide range of canyon aspect ratio (height/width). Results for four representative aspect ratios—0.2, 1, 2, and 10—are presented. In Fresno, CA, monthly SAF ranges from 0.90 to 0.96 for central walls facing north, east, south, or west when the aspect ratio is 0.2 (two-story single-family homes across a street) and both the central and neighboring walls are conventional (albedo 0.25). Monthly SAFs decrease as aspect ratio rises, falling to 0.06–0.24 at an aspect ratio of 10 (adjacent 10-story buildings on the same side of the street). An example worked for a two-story single-family home in Fresno on the west side of a residential street yields SAFs of 0.47 (north), 0.92 (east), 0.50 (south), and 0.63 (west) to apply to the cool-wall annual HVAC energy savings computed for an isolated central building. Shading and reflection reduce the home's annual HVAC energy cost savings by 31%.

14 SOLAR ENERGY↗

LANDSAT 4 band 6 data evaluation

Satellite data collected over Lake Ontario were processed to observed surface temperature values. This involved computing apparent radiance values for each point where surface temperatures were known from averaged digital count values. These radiance values were then converted by using the LOWTRAN 5A atmospheric propagation model. This model was modified by incorporating a spectral response function for the LANDSAT band 6 sensors. A downwelled radiance term derived from LOWTRAN was included to account for reflected sky radiance. A blackbody equivalent source radiance was computed. Measured temperatures were plotted against the predicted temperature. The RMS error between the data sets is 0.51K.

Source record↗

Nonlinear Aeroacoustics Computations by the Space-Time CE/SE Method

The Space-Time Conservation Element and Solution Element Method, or CE/SE Method for short, is a recently developed numerical method for conservation laws. Despite its second order accuracy in space and time, it possesses low dispersion errors and low dissipation. The method is robust enough to cover a wide range of compressible flows: from weak linear acoustic waves to strong discontinuous waves (shocks). An outstanding feature of the CE/SE scheme is its truly multi-dimensional, simple but effective non-reflecting boundary condition (NRBC), which is particularly valuable for computational aeroacoustics (CAA). In nature, the method may be categorized as a finite volume method, where the conservation element (CE) is equivalent to a finite control volume (or cell) and the solution element (SE) can be understood as the cell interface. However, due to its careful treatment of the surface fluxes and geometry, it is different from the existing schemes. Currently, the CE/SE scheme has been developed to a matured stage that a 3-D unstructured CE/SE Navier-Stokes solver is already available. However, in the present review paper, as a general introduction to the CE/SE method, only the 2-D unstructured Euler CE/SE solver is chosen and sketched in section 2. Then applications of the 2-D and 3-D CE/SE schemes to linear, and in particular, nonlinear aeroacoustics are depicted in sections 3, 4, and 5 to demonstrate its robustness and capability.

Loh, Ching Y.↗

Intelligent Metasurfaces with Continuously Tunable Local Surface Impedance for Multiple Reconfigurable Functions

Electromagnetic metasurfaces can be characterized as intelligent if they are able to perform multiple tunable functions, with the desired response being controlled by a computer influencing the individual electromagnetic properties of each metasurface inclusion. Here, we present an example of an intelligent metasurface that operates in the reflection mode in the microwave frequency range. We numerically show that, without changing the main body of the metasurface, we can achieve tunable perfect absorption and tunable anomalous reflection. The tunability features can be implemented using mixed-signal integrated circuits (ICs), which can independently vary both the resistance and reactance, offering complete local control over the complex surface impedance. The ICs are embedded in the unit cells by connecting two metal patches over a thin grounded substrate and the reflection property of the intelligent metasurface can be readily controlled by a computer. Our intelligent metasurface can have a critical influence on future space-time modulated metasurfaces and a multitude of applications, such as beam steering, energy harvesting, and communications.

42 ENGINEERING↗

Heat shielding for Venus entry probes.

Two contrasted approaches to ablative thermal protection of Venus entry probes are presented - a typical carbonaceous charring ablator and a dielectric reflective ablator. The interesting observation in this study is that mass loss is not the controlling variable in heat-shield sizing. A heat-soak problem determines the carbon phenolic sizing. For Teflon, the material thickness required to accomplish reflection is the sizing factor. The total heat-shield weight required to handle either steep or shallow entry is computed to be 13% less for a Teflon shield (if at least 3.2 mm are required for reflection) than for a charring ablator shield. If an efficient reflective backing is used with Teflon, the thickness can be reduced 1.0 mm and the computed weight is 31% less for Teflon than for the charring ablator. Such weight reductions may significantly increase the science payload weight of the miniprobes.

Peterson, D. L.↗

Numerical Modeling of Physical Vapor Transport in Contactless Crystal Growth Geometry

Growth from the vapor under conditions of limited contact with the walls of the growth ampoule is beneficial for the quality of the growing crystal due to reduced stress and contamination which may be caused by interactions with the growth container. The technique may be of a particular interest for studies on crystal growth under microgravity conditions: elimination of some factors affecting the crystal quality may make interpretation of space-conducted processes more conclusive and meaningful. For that reason, and as a part of our continuing studies on 'contactless' growth technique, we have developed a computational model of crystal growth process in such system. The theoretical model was built, and simulations were performed using the commercial computational fluid dynamics code, (CFD) ACE. The code uses an implicit finite volume formulation with a gray discrete ordinate method radiation model which accounts for the diffuse absorption and reflection of radiation throughout the furnace. The three-dimensional model computes the heat transfer through the crystal, quartz, and gas both inside and outside the ampoule, and mass transport from the source to the crystal and the sink. The heat transport mechanisms by conduction, natural convection, and radiation, and mass transport by diffusion and convection are modeled simultaneously and include the heat of the phase transition at the solid-vapor interfaces. As the thermal boundary condition, temperature profile along the walls of the furnace is used. For different thermal profiles and furnace and ampoule dimensions, the crystal growth rate and development of the crystal-vapor and source-vapor interfaces (change of the interface shape and location with time) are obtained. Super/under-saturation in the ampoule is determined and critical factors determining the 'contactless' growth conditions are identified and discussed. The relative importance of the ampoule dimensions and geometry, the furnace dimensions and its temperature, and the properties of the grown material are analyzed. The results of the simulations are compared with related experimental results on growth of CdTe, CdZnTe, ZnTe, PbTe, and PbSnTe crystals by this technique.

Palosz, W.↗

The TOP500 List and Progress in High-Performance Computing

The TOP500 list has enjoyed incredible success as a metric for supercomputing performance and as a source of data for identifying technological trends, for more than two decades. Here, the project's editors reflect on its usefulness and limitations for guiding large-scale scientific computing into the exascale era.

97 MATHEMATICS AND COMPUTING↗

Electronic and optical properties of novel carbon allotropes

The vibrational properties, electronic structures and optical properties of novel carbon allotropes, such as monolayer penta-graphene (PG), double-layer PG and T12-carbon, were studied by first-principles calculations. Results of phonon calculations demonstrate that these exotic carbon allotropes are dynamically stable. The bulk T12 phase is an indirect-gap semiconductor having a quasiparticle (QP) bandgap of ~5.19 eV. When the bulk material transforms to a two-dimensional (2D) phase, the monolayer and double-layer PG become quasi-direct gap semiconductors with smaller QP bandgaps of ~4.48 eV and ~3.67 eV, respectively. Furthermore, the partial charge density analysis indicates that the 2D phases retain part of the electronic characteristics of the T12 phase. The linear photon energy-dependent dielectric functions and related optical properties including refractive index, extinction coefficient, absorption spectrum, reflectivity, and energy-loss spectrum were also computed and discussed. Additionally, the chemical stability of monolayer PG and the electronic and optical properties of double-side hydrogenated monolayer PG were also investigated. Furthermore, the results obtained from our calculations are beneficial to practical applications of these exotic carbon allotropes in optoelectronics and electronics.

36 MATERIALS SCIENCE↗

Pressureless sintering of lithium hydride

Lithium Hydride is a material of growing importance for addressing technological challenges related to nuclear fusion, long-term human space travel, and thermal energy storage. Pressureless sintering provides a straightforward, scalable approach to produce dense LiH parts of all sizes and shapes. Pressed LiH green compacts were sintered at heating rates from 2.5 to 20 °C/min to 650 °C, yielding densities up to 96 ± 1.4 %, with densification initiating at 500 °C. Here, a validated master sintering curve was constructed with a sintering apparent activation energy of 135 kJ/mol. X-ray diffraction and simultaneous thermal analysis revealed Li 2 O formation from 300 – 550 °C and decomposition of LiH into Li metal at 550 °C, each reflected as deviations in the master sintering curve. Computed tomography after thermal treatment to 550 °C showed the formation of corrosion products, and after thermal treatment to 650 °C LiH reduction to Li most significantly at exposed surfaces.

36 MATERIALS SCIENCE↗

Numerical simulation of shock initiation of Ni/Al multilayered composites

The initiation of chemical reaction in cold-rolled Ni/Al multilayered composites by shock compression is investigated numerically. A simplified approach is adopted that exploits the disparity between the reaction and shock loading timescales. The impact of shock compression is modeled using CTH simulations that yield pressure, strain, and temperature distributions within the composites due to the shock propagation. The resulting temperature distribution is then used as initial condition to simulate the evolution of the subsequent shock-induced mixing and chemical reaction. To this end, a reduced reaction model is used that expresses the local atomic mixing and heat release rates in terms of an evolution equation for a dimensionless time scale reflecting the age of the mixed layer. The computations are used to assess the effect of bilayer thickness on the reaction, as well as the impact of shock velocity and orientation with respect to the layering. Computed results indicate that initiation and evolution of the reaction are substantially affected by both the shock velocity and the bilayer thickness. In particular, at low impact velocity, Ni/Al multilayered composites with thick bilayers react completely in 100 ms while at high impact velocity and thin bilayers, reaction time was less than 100 μs. Quantitative trends for the dependence of the reaction time on the shock velocity are also determined, for different bilayer thickness and shock orientation.

36 MATERIALS SCIENCE↗

Observations of Coastal Wind Momentum Flux: Dependence on Fetch and Waves with Comparisons to COARE

Here, using observations from the Martha’s Vineyard Coastal Observatory, this paper investigates how momentum flux in the marine atmospheric surface layer over the coastal ocean varies with fetch, wave age, and wave slope and assesses the performance of the COARE 3.5 bulk parameterization. Long-fetch (at least 300 km) and short-fetch (3–6 km away from land) conditions have very similar momentum flux, with the latter being just 15% higher. The COARE 3.5 wind speed–dependent formulation closely matches the observations. The sea state dependence of wave age and wave slope is analyzed by considering both peak frequency and mean frequency in a wave spectrum. The slope of regression lines between normalized roughness and wave age is sensitive to wind speed ranges and the scatter of momentum flux, potentially explaining why earlier studies did not find a universal formula to characterize the wave dependence. Although the observed momentum flux exhibits an obvious dependence on wave age, a robust quadratic fit between momentum flux and the 10-m neutral wind speed exists only for young waves. For the short-fetch conditions, the momentum flux does not increase as wave slope increases. This may be because waves generated by local wind are still weak and swell that propagates from other areas dominates the wave spectra. In other words, the wave slope computed by considering the spectra does not properly reflect the local wind–wave interaction.

Air-sea interaction↗

Minor planets and related objects. XVI - Polarimetric diameters

Polarimetric observations of 43 asteroids are presented. All objects show a well-developed negative polarization branch as an indicator of unconsolidated surface regoliths. The empirical slope-albedo law for diffusely reflecting solid surfaces is reexamined and used to compute polarimetric albedos and diameters for 30 asteroids. In many cases the results are in good agreement with infrared-radiometric diameters; the older visual diameter measurements were systematically too small. Radiometric albedos below 5%, however, are not confirmed by the polarimetry. Bimodal frequency distributions are noted for asteroid color, albedo, and the depth of the negative polarization branch. Correlations between B - V color and polarimetric parameters suggest that most of the asteroid population can be divided into silicaceous and carbonaceous opacity classes.

Zellner, B.↗

Geometric modeling and analysis of large latticed surfaces

The application of geometrical schemes, similar to geodesic domes, to large spherical antenna reflectors was investigated. The shape and size of flat segmented latticed surfaces which approximate general shells of revolution, and in particular spherical and paraboloidal reflective surfaces, were determined. The extensive mathematical and computational geometric analyses of the reflector resulted in the development of a general purpose computer program capable of generating the complete design parameters of the dish. The program also includes a graphical self contained subroutine for graphic display of the required design.

Nayfeh, A. H.↗