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At least 487 records · Page 27

Analysis of Low RRR SRF Cavities

Recent findings in the superconducting radio-frequency (SRF) community have shown that introducing certain impurities into high-purity niobium can improve quality factors and accelerating gradients. Success has been found in nitrogen-doping, diffusion of the native oxide into the niobium surface, and thin films of alternate superconductors atop a niobium bulk cavity. We question why some impurities improve RF performance while others hinder it. The purpose of this study is to characterize the impurity profile of niobium with a low residual resistance ratio (RRR) and correlate these impurities with the RF performance of low RRR cavities so that the mechanism of recent impurity-based improvements can be better understood and improved upon. Additionally, we perform a low temperature bake on the low RRR cavity to evaluate how the intentional addition of oxygen to the RF layer affects performance. We have found that low RRR cavities experience low temperature-dependent BCS resistance behavior more prominently than their high RRR counterparts. The results of this study have the potential to unlock a new understanding on SRF materials.

43 PARTICLE ACCELERATORS↗

Analysis of Low RRR SRF Cavities

Recent findings in the superconducting radio-frequency (SRF) community have shown that introducing certain impurities into high-purity niobium can improve quality factors and accelerating gradients. Success has been found in nitrogen-doping, diffusion of the native oxide into the niobium surface, and thin films of alternate superconductors atop a niobium bulk cavity. We question why some impurities improve RF performance while others hinder it. The purpose of this study is to characterize the impurity profile of niobium with a low residual resistance ratio (RRR) and correlate these impurities with the RF performance of low RRR cavities so that the mechanism of recent impurity-based improvements can be better understood and improved upon. Additionally, we performed surface treatments, low temperature baking and nitrogen-doping, on low RRR cavities to evaluate how the intentional addition of more impurities to the RF layer affects performance. We have found that low RRR cavities experience low temperature-dependent BCS resistance behavior more prominently than their high RRR counterparts. The results of this study have the potential to unlock a new understanding on SRF materials.

43 PARTICLE ACCELERATORS↗

Numerical solutions of the compressible 3-D boundary-layer equations for aerospace configurations with emphasis on LFC

The application of stability theory in Laminar Flow Control (LFC) research requires that density and velocity profiles be specified throughout the viscous flow field of interest. These profile values must be as numerically accurate as possible and free of any numerically induced oscillations. Guidelines for the present research project are presented: develop an efficient and accurate procedure for solving the 3-D boundary layer equation for aerospace configurations; develop an interface program to couple selected 3-D inviscid programs that span the subsonic to hypersonic Mach number range; and document and release software to the LFC community. The interface program was found to be a dependable approach for developing a user friendly procedure for generating the boundary-layer grid and transforming an inviscid solution from a relatively coarse grid to a sufficiently fine boundary-layer grid. The boundary-layer program was shown to be fourth-order accurate in the direction normal to the wall boundary and second-order accurate in planes parallel to the boundary. The fourth-order accuracy allows accurate calculations with as few as one-fifth the number of grid points required for conventional second-order schemes.

Harris, Julius E.↗

Architecture Synthesis and Reduced-Cost Architectures for Human Exploration Missions

Development of architectures for human exploration missions has been pursued in the international aerospace community for a long time. This paper attempts a different approach and way of looking at architectures. Most of the emphasis is on lunar architectures with a brief look at Mars. The first step is to set forth overarching gods in order to understand origins of requirements. Then, principles and guidelines are developed for architecture formulation. It is argued that safety and cost are the primary factors. Alternative mission profiles are examined for adherence to the principles, and specific architectures formulated according to the guidelines. The guidelines themselves indicate preferred evolution paths from lunar to Mars architectures. Results of example calculations are given to illustrate the process, and an evolution path is recommended. Safety and cost criteria tend to conflict, but it is shown that cost-efficient architectures can be enhanced for good safety ratings at modest cost.

Woodcock, Gordon↗

Limb Correction of RGB Composite Imagery for Improved Interpretation

RGB (Red‐Green‐Blue) imagery, created by integrating several spectral channels into one composite image, is currently used by the operational weather community to aid in quick, real‐time analysis of atmospheric processes. However, the limb effect - a result of an increasing optical path length of the absorbing atmosphere between the satellite and the earth as scan angle increases - interferes with the qualitative interpretation of RGB composites at large scan angles. It also makes the comparison of similar products from multiple satellite sensors difficult. Recent work has indicated that correcting for the limb effect in the basic channel imagery using simple statistical relationships greatly improves the utility of the derived RGB imagery. However, it is hypothesized that the limb correction coefficients vary with respect to latitude, season, cloud cover, and surface albedo. This poster will highlight an improved approach to the limb correction of RGB imagery using varying coefficients. The Joint Center for Satellite and Data Assimilation (JCSDA) Community Radiative Transfer Model (CRTM) was used to simulate top of atmosphere brightness temperatures at varying scan angles for infrared channels corresponding to the Aqua and Terra Moderate Resolution Imaging Spectroradiometer (MODIS), Suomi NPP Visible Infrared Imaging Radiometer Suite (VIIRS), and Meteosat‐10 Spinning Enhanced Visible and Infrared Imager (SEVIRI) sensors. A subset of European Center for Medium‐Range Weather Forecasts (ECMWF) temperature, specific humidity, and ozone mixing ratio profiles from March 2013 through February 2014 were used as input to the CRTM. The simulated brightness temperatures were used to determine the best fit slope of the linear relationship between the natural log of the cosine of the scan angle and the difference of the simulated brightness temperature at nadir and on the limb. The correction coefficients were then analyzed for variability with respect to latitude, season, cloud cover, and surface type and used to produce improved limb corrected imagery. Applications of the results will be presented.

Elmer, Nicholas↗

Projected Applications of a "Climate in a Box" Computing System at the NASA Short-Term Prediction Research and Transition (SPoRT) Center

The NASA Short-term Prediction Research and Transition (SPoRT) Center focuses on the transition of unique observations and research capabilities to the operational weather community, with a goal of improving short-term forecasts on a regional scale. Advances in research computing have lead to "Climate in a Box" systems, with hardware configurations capable of producing high resolution, near real-time weather forecasts, but with footprints, power, and cooling requirements that are comparable to desktop systems. The SPoRT Center has developed several capabilities for incorporating unique NASA research capabilities and observations with real-time weather forecasts. Planned utilization includes the development of a fully-cycled data assimilation system used to drive 36-48 hour forecasts produced by the NASA Unified version of the Weather Research and Forecasting (WRF) model (NU-WRF). The horsepower provided by the "Climate in a Box" system is expected to facilitate the assimilation of vertical profiles of temperature and moisture provided by the Atmospheric Infrared Sounder (AIRS) aboard the NASA Aqua satellite. In addition, the Moderate Resolution Imaging Spectroradiometer (MODIS) instruments aboard NASA s Aqua and Terra satellites provide high-resolution sea surface temperatures and vegetation characteristics. The development of MODIS normalized difference vegetation index (NVDI) composites for use within the NASA Land Information System (LIS) will assist in the characterization of vegetation, and subsequently the surface albedo and processes related to soil moisture. Through application of satellite simulators, NASA satellite instruments can be used to examine forecast model errors in cloud cover and other characteristics. Through the aforementioned application of the "Climate in a Box" system and NU-WRF capabilities, an end goal is the establishment of a real-time forecast system that fully integrates modeling and analysis capabilities developed within the NASA SPoRT Center, with benefits provided to the operational forecasting community.

Jedlovec, Gary J.↗

Impact of a New Sea Ice Thermodynamic Formulation in the CESM2 Sea Ice Component

Abstract The sea ice component of the Community Earth System Model version 2 (CESM2) contains new “mushy‐layer” physics that simulates prognostic salinity in the sea ice, with consequent modifications to sea ice thermodynamics and the treatment of melt ponds. The changes to the sea ice model and their influence on coupled model simulations are described here. Two simulations were performed to assess the changes in the vertical thermodynamics formulation with prognostic salinity compared to a constant salinity profile. Inclusion of the mushy layer thermodynamics of Turner et al. (2013, https://doi.org/10.1002/jgrc.20171 ) in a fully coupled Earth system model produces thicker and more extensive sea ice in the Arctic, with relatively unchanged sea ice in the Antarctic compared to simulations using a constant salinity profile. While this is consistent with the findings of uncoupled ice‐ocean model studies, the role of the frazil and congelation growth is more important in fully coupled simulations. Melt pond drainage is also an important contribution to simulated ice thickness differences as also found in the uncoupled simulations of Turner and Hunke (2015; https://doi.org/10.1002/2014JC010358 ). However, it is an interaction of the ponds and the snow fraction that impacts the surface albedo and hence the top melt. The changes in the thermodynamics and resulting ice state modify the ice‐ocean‐atmosphere fluxes with impacts on the atmosphere and ocean states, particularly temperature.

Bailey, David A.↗

Theoretical Analysis of Fractional Viscoelastic Flow in Circular Pipes: General Solutions

Fractional calculus is a relatively old yet emerging field of mathematics with the widest range of engineering and biomedical applications. Despite being an incredibly powerful tool, it, however, requires promotion in the engineering community. Rheology is undoubtedly one of the fields where fractional calculus has become an integral part of cutting-edge research. There exists extensive literature on the theoretical, experimental, and numerical treatment of various fractional viscoelastic flows in constraint geometries. However, the general theoretical approach that unites several most commonly used models is missing. Here we present exact analytical solutions for fractional viscoelastic flow in a circular pipe. We find velocity profiles and shear stresses for fractional Maxwell, Kelvin–Voigt, Zener, Poynting–Thomson, and Burgers models. The dynamics of these quantities are studied with respect to normalized pipe radius, fractional orders, and elastic moduli ratio. Three different types of behavior are identified: monotonic increase, resonant, and aperiodic oscillations. The models developed are applicable in the widest material range and allow for the alteration of the balance between viscous and elastic properties of the materials.

Gritsenko, Dmitry (ORCID:0000000248181512)↗

Observations for Model Intercomparison Project (Obs4MIPs): status for CMIP6

The Observations for Model Intercomparison Project (Obs4MIPs) was initiated in 2010 to facilitate the use of observations in climate model evaluation and research, with a particular target being the Coupled Model Intercomparison Project (CMIP), a major initiative of the World Climate Research Programme (WCRP). To this end, Obs4MIPs (1) targets observed variables that can be compared to CMIP model variables; (2) utilizes dataset formatting specifications and metadata requirements closely aligned with CMIP model output; (3) provides brief technical documentation for each dataset, designed for nonexperts and tailored towards relevance for model evaluation, including information on uncertainty, dataset merits, and limitations; and (4) disseminates the data through the Earth System Grid Federation (ESGF) platforms, making the observations searchable and accessible via the same portals as the model output. Taken together, these characteristics of the organization and structure of obs4MIPs should entice a more diverse community of researchers to engage in the comparison of model output with observations and to contribute to a more comprehensive evaluation of the climate models. At present, the number of obs4MIPs datasets has grown to about 80; many are undergoing updates, with another 20 or so in preparation, and more than 100 are proposed and under consideration. A partial list of current global satellite-based datasets includes humidity and temperature profiles; a wide range of cloud and aerosol observations; ocean surface wind, temperature, height, and sea ice fraction; surface and top-of-atmosphere longwave and shortwave radiation; and ozone (O 3 ), methane (CH 4 ), and carbon dioxide (CO 2 ) products. A partial list of proposed products expected to be useful in analyzing CMIP6 results includes the following: alternative products for the above quantities, additional products for ocean surface flux and chlorophyll products, a number of vegetation products (e.g., FAPAR, LAI, burned area fraction), ice sheet mass and height, carbon monoxide (CO), and nitrogen dioxide (NO 2 ). While most existing obs4MIPs datasets consist of monthly-mean gridded data over the global domain, products with higher time resolution (e.g., daily) and/or regional products are now receiving more attention. Along with an increasing number of datasets, obs4MIPs has implemented a number of capability upgrades including (1) an updated obs4MIPs data specifications document that provides additional search facets and generally improves congruence with CMIP6 specifications for model datasets, (2) a set of six easily understood indicators that help guide users as to a dataset's maturity and suitability for application, and (3) an option to supply supplemental information about a dataset beyond what can be found in the standard metadata. With the maturation of the obs4MIPs framework, the dataset inclusion process, and the dataset formatting guidelines and resources, the scope of the observations being considered is expected to grow to include gridded in situ datasets as well as datasets with a regional focus, and the ultimate intent is to judiciously expand this scope to any observation dataset that has applicability for evaluation of the types of Earth system models used in CMIP.

54 ENVIRONMENTAL SCIENCES↗

The Earth Radiation Budget Experiment nonscanner instrument

Two Earth Radiation Budget Experiment (ERBE) nonscanner instruments are flying with companion scanner instruments to measure the earth's energy budget from low earth orbit. A third set of instruments will be launched in March 1986. This program is the first designed to make a comprehensive set of highly accurate measurements of the earth's energy budget on the spectral, spatial, and temporal scales specified by the scientific community for use in climatological research. The ERBE nonscanner combines the use of the highly accurate active cavity radiometer (ACR) detector with a comprehensive preflight calibration and characterization program and a design which includes operational flexibility and in-flight calibration checks to achieve and maintain, throughout its 2-year design life, a measurement accuracy capability not previously possible. This paper describes the ERBE nonscanner instrument, its operation, calibration, and mission profile.

Luther, M. R.↗

A Modularized Urban Scale Building Energy Modeling Framework Designed with An Open Mind

In recent years, physics-based building energy modeling (BEM) has started being used to evaluate the performance of buildings in the context of connected communities and on an urban scale to study their aggregated energy use, interactions, and impacts on the energy supply infrastructure and environment. The development of urban-scale BEM solutions needs extensive effort. Existing attempts tend to focus on different aspects of BEM on an urban scale, such as collecting as-built building data from different information sources, integrating geometry modeling with geographic information systems (GISs), representing operational and occupancy profiles, automating workflow, processing and visualizing the results, and conducting large-scale simulations. Urban-scale BEM development would benefit from multi-disciplinary research areas and from an open platform to adopt advancements on data sources and tools. For these purposes, this research proposes a modularized bottom-up model creation and simulation framework that is built on the state-of-the-art BEM tools and can accommodate different building stock data. This framework uses a standardized schema to describe building design and operational characteristics, and it can be instantiated from different building survey datasets with heterogeneous structures. The paper demonstrates how thousands of surveyed buildings from the 2012 U.S. Energy Information Administration’s Commercial Buildings Energy Consumption Survey (CBECS) were one-to-one converted to EnergyPlus models through the schema and the model generation process, then simulated with distributed computing, and their results are summarized.

Lei, Xuechen↗

DRAM for distilling microbial metabolism to automate the curation of microbiome function

Abstract Microbial and viral communities transform the chemistry of Earth's ecosystems, yet the specific reactions catalyzed by these biological engines are hard to decode due to the absence of a scalable, metabolically resolved, annotation software. Here, we present DRAM (Distilled and Refined Annotation of Metabolism), a framework to translate the deluge of microbiome-based genomic information into a catalog of microbial traits. To demonstrate the applicability of DRAM across metabolically diverse genomes, we evaluated DRAM performance on a defined, in silico soil community and previously published human gut metagenomes. We show that DRAM accurately assigned microbial contributions to geochemical cycles and automated the partitioning of gut microbial carbohydrate metabolism at substrate levels. DRAM-v, the viral mode of DRAM, established rules to identify virally-encoded auxiliary metabolic genes (AMGs), resulting in the metabolic categorization of thousands of putative AMGs from soils and guts. Together DRAM and DRAM-v provide critical metabolic profiling capabilities that decipher mechanisms underpinning microbiome function.

59 BASIC BIOLOGICAL SCIENCES↗

Evaluation of water vapor distribution in general circulation models using satellite observations

This paper presents a comparison of the water vapor distribution obtained from two general circulation models, the European Centre for Medium-Range Weather Forecasts (ECMWF) model and the National Center for Atmospheric Research (NCAR) Community Climate Model (CCM), with satellite observations of total precipitable water (TPW) from Special Sensor Microwave/Imager (SSM/I) and upper tropospheric relative humidity (UTH) from GOES. Overall, both models are successful in capturing the primary features of the observed water vapor distribution and its seasonal variation. For the ECMWF model, however, a systematic moist bias in TPW is noted over well-known stratocumulus regions in the eastern subtropical oceans. Comparison with radiosonde profiles suggests that this problem is attributable to difficulties in modeling the shallowness of the boundary layer and large vertical water vapor gradients which characterize these regions. In comparison, the CCM is more successful in capturing the low values of TPW in the stratocumulus regions, although it tends to exhibit a dry bias over the eastern half of the subtropical oceans and a corresponding moist bias in the western half. The CCM also significantly overestimates the daily variability of the moisture fields in convective regions, suggesting a problem in simulating the temporal nature of moisture transport by deep convection. Comparison of the monthly mean UTH distribution indicates generally larger discrepancies than were noted for TPW owing to the greater influence of large-scale dynamical processes in determining the distribution of UTH. In particular, the ECMWF model exhibits a distinct dry bias along the Intertropical Convergence Zone (ITCZ) and a moist bias over the subtropical descending branches of the Hadley cell, suggesting an underprediction in the strength of the Hadley circulation. The CCM, on the other hand, demonstrates greater discrepancies in UTH than are observed for the ECMWF model, but none that are as clearly correlated with well-known features of the large-scale circulation.

Soden, Brian J.↗

Recent Advances in the Use of Ionic Liquids and Deep Eutectic Solvents for Lignocellulosic Biorefineries and Biobased Chemical and Material Production

Biorefineries, which process biomass feedstocks into valuable (bio)products, aim to replace fossil fuel-based refineries to produce energy and chemicals, reducing environmental and health hazards, including climate change, and supporting a sustainable economy. In particular, lignocellulose-based biorefineries, utilizing the most abundant renewable feedstock on Earth, have significant potential to supply sustainable energy, chemicals and materials. Ionic liquids (ILs, organic salts with low melting temperatures) and deep eutectic solvents (DESs, mixtures with eutectic points lower than the ideal mixture) are capable of dissolving some of the key lignocellulose polymers, and even the whole biomass. Furthermore, they have intrinsic advantages over molecular solvents, including safer usage profiles and high tunability, which allow tailored physicochemical properties. Such properties provide unique opportunities for the development of new processes that could unlock the full potential of future biorefineries. Here, we review the current state of lignocellulosic biomass processing with ILs and DESs, with a specific focus on the pretreatment chemistry, process flow and products from each component; followed by discussions on sustainability assessments and technological challenges. We aim to inform the research community about the opportunities, challenges and perspectives in developing truly sustainable lignocellulose-based biorefineries.

09 BIOMASS FUELS↗

BOREAS TE-1 CH4 Flux Data Over The SSA-OA

The BOREAS TE-1 team collected various data to characterize the soil-plant systems in the BOREAS SSA. Particular emphasis was placed on nutrient biochemistry, the stores and transfers of organic carbon, and how the characteristics were related to measured methane fluxes. The overall transect in the Prince Albert National Park (Saskatchewan, Canada) included the major plant communities and related soils that occurred in that section of the boreal forest. Soil physical, chemical, and biological measurements along the transect were used to characterize the static environment, which allowed them to be related to methane fluxes. Chamber techniques were used to provide a measure of methane production/uptake. Chamber measurements coupled with flask sampling were used to determine the seasonality of methane fluxes. This particular data set contains methane flux and soil profile methane concentration values from the SSA-OA site. The data were collected from 29-May to 17-Sep-1994. The data are stored in tabular ASCII files. The data files are available on a CD-ROM (see document number 20010000884), or from the Oak Ridge National Laboratory (ORNL) Distributed Active Archive Center (DAAC).

Anderson, Darwin↗

Automated Miniaturized Instrument for Space Biology Applications and the Monitoring of the Astronauts Health Onboard the ISS

Human space travelers experience a unique environment that affects homeostasis and physiologic adaptation. The spacecraft environment subjects the traveler to noise, chemical and microbiological contaminants, increased radiation, and variable gravity forces. As humans prepare for long-duration missions to the International Space Station (ISS) and beyond, effective measures must be developed, verified and implemented to ensure mission success. Limited biomedical quantitative capabilities are currently available onboard the ISS. Therefore, the development of versatile instruments to perform space biological analysis and to monitor astronauts' health is needed. We are developing a fully automated, miniaturized system for measuring gene expression on small spacecraft in order to better understand the influence of the space environment on biological systems. This low-cost, low-power, multi-purpose instrument represents a major scientific and technological advancement by providing data on cellular metabolism and regulation. The current system will support growth of microorganisms, extract and purify the RNA, hybridize it to the array, read the expression levels of a large number of genes by microarray analysis, and transmit the measurements to Earth. The system will help discover how bacteria develop resistance to antibiotics and how pathogenic bacteria sometimes increase their virulence in space, facilitating the development of adequate countermeasures to decrease risks associated with human spaceflight. The current stand-alone technology could be used as an integrated platform onboard the ISS to perform similar genetic analyses on any biological systems from the tree of life. Additionally, with some modification the system could be implemented to perform real-time in-situ microbial monitoring of the ISS environment (air, surface and water samples) and the astronaut's microbiome using 16SrRNA microarray technology. Furthermore, the current system can be enhanced substantially by combining it with other technologies for automated, miniaturized, high-throughput biological measurements, such as fast sequencing, protein identification (proteomics) and metabolite profiling (metabolomics). Thus, the system can be integrated with other biomedical instruments in order to support and enhance telemedicine capability onboard ISS. NASA's mission includes sustained investment in critical research leading to effective countermeasures to minimize the risks associated with human spaceflight, and the use of appropriate technology to sustain space exploration at reasonable cost. Our integrated microarray technology is expected to fulfill these two critical requirements and to enable the scientific community to better understand and monitor the effects of the space environment on microorganisms and on the astronaut, in the process leveraging current capabilities and overcoming present limitations.

Human space travelers↗

Long Term Stability Monitoring of Aqua MODIS Thermal Emissive Bands through Radiative Transfer Modeling

Moderate Resolution Imaging Spectroradiometer (MODIS) on Aqua has been in operation providing continuous global observations for science research and applications since 2002. The long-term stability of thermal emissive bands (TEBs) of Aqua MODIS was monitored through inter-comparisons with measurements by hyperspectral infrared sensors, such as AIRS on Aqua and IASI on MetOp satellite, or through long term vicarious monitoring over cold targets, such as Dome- C and deep convective clouds (DCC). In this paper, a radiative transfer modeling-based simulation model using Community Radiative Transfer Model (CRTM) is developed to perform the long-term monitoring of the stability of TEBs of Aqua MODIS. CRTM is a fast-radiative transfer model for calculations of radiances for satellite infrared radiometers and is able to output infrared radiance and brightness temperature at spectral bands of MODIS. Long term European Centre for Medium-Range Weather Forecasts (ECMWF) global atmospheric reanalysis data, such as temperature and humidity profiles, are used as inputs to the CRTM simulation. By confining the area of interest to be over low to middle latitude ocean, the long-term stabilities of selected Aqua MODIS TEBs are monitored through Observation–Background (O-B) brightness temperature (BT) bias between MODIS measurements and BT retrieval from CRTM simulation. The consistency and relative stability between Aqua MODIS and ECMWF reanalysis data for surface channels of MODIS are evaluated. In addition, the radiative transfer modeling with CRTM enables us to evaluate the impacts of long term variation of global CO2 distribution on the O-B BT biases for CO2 channels of Aqua MODIS through comparison of simulations with constant or long term variable CO2 as inputs. The O-B analysis with RTM show that Aqua MODIS surface channels are all radiometrically stable with yearly BT bias drift less than 0.004K/year for B20, B22, B23 and ~0.01K/year for B31 and B32. The CO2 absorption channels of Aqua MODIS, e.g. B33-B36, are stable with BT bias drift < 0.005K/year.

MODIS↗

Hyporheic zone, river, and groundwater metagenome resolved genomes and rpS3 genes in East River Watershed, Colorado USA Summer 2020, 2021

Here we present metagenome assembled genomes (MAGs) for the bacterial and archaeal communities from water filter collected across 8 locations along the East River Watershed, CO, and 1 nearby groundwater well. The purpose was to look for connectivity and similarities across the network and to see the impact of the groundwater. As a part of Lawrence Berkeley National Laboratory (LBNL) Watershed Science Focus Area (SFA), we assessed community composition and strain similarities between the sites and we also compared it to previous metagenomic studies within the watershed looking at floodplain (Matheus Carnevali et al. 2021) and hillslope (Lavy et al. 2019) microbiomes. Here we present metagenome assembled genomes (MAGs) for the bacterial and archaeal communities from filters across 8 locations during August 2020 and July 2021. This resulted in 32 samples. The groundwater sample was sequenced at UC Berkley's QB3. The other 31 samples were sequenced at University of Maryland. Metagenomes were assembled using four autobinners and the best bins were selected using dasTool. The genomes were dereplicated at 95% with dRep and the subset of winning genomes were manually curated based on visual inspection of taxonomic profile, GC content, coverage, and a set of 51 bacterial single copy genes (BSCG), and 38 archaeal signal copy genes (ASCG). The dataset includes a zip file of 311 genomes (HZ_River_SW_MAGS_Dereplicated_95.zip). The dataset additionally includes a zipped file of ribosomal protein small subunit 3 (rpS3) proteins from the hyporheic zone and river data (rpS3_Proteins_HZ_River.zip), a metadata file used to register associated samples with IGSNs (International Generic Sample Numbers) (samples.csv), a location metadata file (locations.csv). This work was supported by the Watershed Function Science Focus Area at Lawrence Berkeley National Laboratory funded by the US Department of Energy, Office of Science, Biological and Environmental Research under Contract No. DE-AC02-05CH11231.

DNA↗