A systematic study of the effects of volatile species on the structure and physical properties of amorphous SiO2
Explore the source record for details and available documents.
Harrison, Lindsay Marie [Sandia National Laborator↗
SEARCH · Engineering Papers
Results for “Systematics”
Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.
Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.
Chasing the Rabbit: A Systematic Exploration of Software-Defined HPC storage
Explore the source record for details and available documents.
Computer science↗
Enhancing isoprenol production by systematically tuning metabolic pathways using CRISPR interference in E. coli
Regulation of metabolic gene expression is crucial for maximizing bioproduction titers. Recent engineering tools including CRISPR/Cas9, CRISPR interference (CRISPRi), and CRISPR activation (CRISPRa) have enabled effective knock-out, knock-down, and overexpression of endogenous pathway genes, respectively, for advanced strain engineering. CRISPRi in particular has emerged as a powerful tool for gene repression through the use of a deactivated Cas9 (dCas9) protein and target guide RNA (gRNA). By constructing gRNA arrays, CRISPRi has the capacity for multiplexed gene downregulation across multiple orthogonal pathways for enhanced bioproduction titers. In this study, we harnessed CRISPRi to downregulate 32 essential and non-essential genes in E. coli strains heterologously expressing either the original mevalonate pathway or isopentenyl diphosphate (IPP) bypass pathway for isoprenol biosynthesis. Isoprenol remains a candidate bioproduct both as a drop-in blend additive and as a precursor for the high-performance sustainable aviation fuel, 1,4-dimethylcyclooctane (DMCO). Of the 32 gRNAs targeting genes associated with isoprenol biosynthesis, a subset was found to vastly improve product titers. Construction of a multiplexed gRNA library based on single guide RNA (sgRNA) performance enabled simultaneous gene repression, yielding a 3 to 4.5-fold increase in isoprenol titer (1.82 ± 0.19 g/L) on M9-MOPS minimal medium. We then scaled the best performing CRISPRi strain to 2-L fed-batch cultivation and demonstrated translatable titer improvements, ultimately obtaining 12.4 ± 1.3 g/L isoprenol. Our strategy further establishes CRISPRi as a powerful tool for tuning metabolic flux in production hosts and that titer improvements are readily scalable with potential for applications in industrial bioproduction.
59 BASIC BIOLOGICAL SCIENCES↗
Bioprospecting Trichoderma: A Systematic Roadmap to Screen Genomes and Natural Products for Biocontrol Applications
Natural products derived from microbes are crucial innovations that would help in reaching sustainability development goals worldwide while achieving bioeconomic growth. Trichoderma species are well-studied model fungal organisms used for their biocontrol properties with great potential to alleviate the use of agrochemicals in agriculture. However, identifying and characterizing effective natural products in novel species or strains as biological control products remains a meticulous process with many known challenges to be navigated. Integration of recent advancements in various “omics” technologies, next generation biodesign, machine learning, and artificial intelligence approaches could greatly advance bioprospecting goals. Herein, we propose a roadmap for assessing the potential impact of already known or newly discovered Trichoderma species for biocontrol applications. By screening publicly available Trichoderma genome sequences, we first highlight the prevalence of putative biosynthetic gene clusters and antimicrobial peptides among genomes as an initial step toward predicting which organisms could increase the diversity of natural products. Next, we discuss high-throughput methods for screening organisms to discover and characterize natural products and how these findings impact both fundamental and applied research fields.
59 BASIC BIOLOGICAL SCIENCES↗
Editorial: Towards the rapid and systematic assessment of vaccine technologies
The COVID-19 pandemic highlighted both the extraordinary potential of modern vaccinology and persistent challenges in how vaccine technologies are assessed. While vaccines can be developed and deployed at unprecedented speed, our ability to predict efficacy in a population is constrained by methodological difficulties, underreporting of negative results, and limited comparability across studies. This editorial introduces a Research Topic that brings together an interdisciplinary collection of experimental, computational, and theoretical contributions spanning multiple pathogens and vaccine platforms. Across these contributions, emerging themes emphasize the need for standardized immunogenicity metrics, transparent reporting including negative findings, and harmonized experimental protocols to support meaningful comparisons. This editorial highlights community practices and shared commitments – supported by researchers, funders, and journals – that could strengthen reproducibility, transparency, and cumulative learning in vaccine research.
59 BASIC BIOLOGICAL SCIENCES↗
Systematic analysis of Baobaoqu fermentation starter for Wuliangye Baijiu by the combination of metagenomics and metabolomics
Baobaoqu (BBQ) is a traditional fermenting power, which is widely applied in Nong-flavor Baijiu brewing. There are two different types of BBQ (premium BBQ and normal BBQ) used in industrial manufacture, but the reasons for the significant differences between two kinds of BBQ have not been clearly illuminated. In this study, the combination of metagenomics and metabolomics was performed to compare the differences in the composition of microbial communities and the components of flavors between premium BBQ and normal BBQ. The results showed that the glycosidase-producing microorganisms are the biomarkers of premium BBQ, contributing a better ability of carbon source utilization than normal BBQ. In addition, several important flavors (ethyl hexanoate, phenylethanol, ethyl acetate) were rich in normal BBQ, which have a significant positive correlation with the biomarkers ( Lactobacillus and Pichia kudriavzevii ) of normal BBQ. It suggests that the microbial community has an advantage in utilizing raw materials in premium BBQ, while the community was inclined to form flavors in normal BBQ. The differences between two types of BBQ at the microbial and flavor level have theoretical and practical guiding significance in the application of premium and normal BBQ and in the further improvements of taste and quality of Baijiu.
Zhang, Qingmei↗
Re-evaluating the Systematics of Dendrolycopodium Using Restriction-Site Associated DNA-Sequencing
The genus Dendrolycopodium (Lycopodiaceae) includes four to five species across North America and East Asia. Species identification in Dendrolycopodium is difficult due to limited or inconsistent characters. In addition, plants with intermediate morphologies regularly occur, potentially indicative of interspecific hybridization. To determine the species relationships in Dendrolycopodium and investigate the existence of hybrids, we generated a draft genome assembly for D. obscurum and carried out double-digest restriction-site associated DNA sequencing (RADSeq) on 86 Dendrolycopodium specimens. Our sampling includes all the described species and 11 individuals with intermediate morphology. We find that the genus can be divided into four clades that largely correspond to the described taxa, as well as evidence of interspecific hybridization. Within these clades, our STRUCTURE analysis suggests that there are multiple finer subgroups, with evidence of hybridization and introgression between these subgroups. Given the limited availability of specimens collected from Asia, the status of the various Asian species remains uncertain and will require further study. In summary, our study confirms several hybrid relationships in Dendrolycopodium and provides a clear phylogenetic framework for future taxonomic revision.
59 BASIC BIOLOGICAL SCIENCES↗
The comparison between effects of Taichi and conventional exercise on functional mobility and balance in healthy older adults: a systematic literature review and meta-analysis
Background Taichi is beneficial for functional mobility and balance in older adults. However, such benefits of Taichi when comparing to conventional exercise (CE) are not well understood due to large variance in study protocols and observations. Methods We reviewed publications in five databases. Eligible studies that examined the effects of Taichi on the outcomes of functional mobility and balance in healthy older adults as compared to CE were included. Subgroup analyses compared the effects of different types of CE (e.g., single and multiple-type exercise) and different intervention designs (e.g., Taichi types) on those outcomes (Registration number: CRD42022331956). Results Twelve studies consisting of 2,901 participants were included. Generally, compared to CE, Taichi induced greater improvements in the performance of Timed-Up-and-Go (SMD = −0.18, [−0.33 to −0.03], p = 0.040, I 2 = 59.57%), 50-foot walking (MD = −1.84 s, [−2.62 to −1.07], p < 0.001, I 2 = 0%), one-leg stance with eyes open (MD = 6.00s, [2.97 to 9.02], p < 0.001, I 2 = 83.19%), one-leg stance with eyes closed (MD = 1.65 s, [1.35 to 1.96], p < 0.001, I 2 = 36.2%), and functional reach (SMD = 0.7, [0.32 to 1.08], p < 0.001, I 2 = 86.79%) tests. Subgroup analyses revealed that Taichi with relatively short duration (<20 weeks), low total time (≤24 h), and/or using Yang-style, can induce significantly greater benefits for functional mobility and balance as compared to CE. Uniquely, Taichi only induced significantly greater improvements in Timed-Up-and-Go compared to single- (SMD = −0.40, [−0.55 to −0.24], p < 0.001, I 2 = 6.14%), but not multiple-type exercise. A significant difference between the effects of Taichi was observed on the performance of one-leg stance with eyes open when compared to CE without balance (MD = 3.63 s, [1.02 to 6.24], p = 0.006, I 2 = 74.93%) and CE with balance (MD = 13.90s, [10.32 to 17.48], p < 0.001, I 2 = 6.1%). No other significant difference was shown between the influences of different CE types on the observations. Conclusion Taichi can induce greater improvement in functional mobility and balance in older adults compared to CE in a more efficient fashion, especially compared to single-type CE. Future studies with more rigorous design are needed to confirm the observations here.
Li, Yiting↗
A Systematic Approach to Developing Sustainable Post-Disaster Shelters in the Southern Region of the United States
This study aims to propose a sustainable shelter design involving energy savings, less environmental impact, and rapid construction. The structural design of the shelter is based on 3D-printing technology. Sustainability assessments, including life cycle analysis (LCA), life cycle energy assessment (LCEA), and energy justice of the designed shelter, were conducted to prove the sustainable shelter design. The outcomes of this study for several scenarios will not only allow decision-makers to design permanent shelters with maximized utilization of limited resources but also help local communities strengthen their ability to recover with minimal outside assistance post-disaster. Furthermore, residents can utilize the sustainable shelter to maintain critical functions, including business continuity and local business in emergencies.
32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗
LPBF Processability of NiTiHf Alloys: Systematic Modeling and Single-Track Studies
Research into the processability of NiTiHf high-temperature shape memory alloys (HTSMAs) via laser powder bed fusion (LPBF) is limited; nevertheless, these alloys show promise for applications in extreme environments. This study aims to address this limitation by investigating the printability of four NiTiHf alloys with varying Hf content (1, 2, 15, and 20 at. %) to assess their suitability for LPBF applications. Solidification cracking is one of the main limiting factors in LPBF processes, which occurs during the final stage of solidification. To investigate the effect of alloy composition on printability, this study focuses on this defect via a combination of computational modeling and experimental validation. To this end, solidification cracking susceptibility is calculated as Kou’s index and Scheil–Gulliver model, implemented in Thermo-Calc/2022a software. An innovative powder-free experimental method through laser remelting was conducted on bare NiTiHf ingots to validate the parameter impacts of the LPBF process. The result is the processability window with no cracking likelihood under diverse LPBF conditions, including laser power and scan speed. This comprehensive investigation enhances our understanding of the processability challenges and opportunities for NiTiHf HTSMAs in advanced engineering applications.
36 MATERIALS SCIENCE↗
One Health Approach to Tackle Microbial Contamination on Poultries—A Systematic Review
This study reports the search of available data published regarding microbial occupational exposure assessment in poultries, following the PRISMA methodology. Air collection through filtration was the most frequently used. The most commonly used passive sampling method was material collection such as dust, cages, soils, sediment, and wastewater. Regarding assays applied, the majority of studies comprised culture-based methods, but molecular tools were also frequently used. Screening for antimicrobial susceptibility was performed only for bacteria; cytotoxicity, virological and serological assays were also performed. Most of the selected studies focused on bacteria, although fungi, endotoxins, and β-glucans were also assessed. The only study concerning fungi and mycotoxins reported the carcinogenic mycotoxin AFB1. This study gives a comprehensive overview of microbial contamination in the poultry industry, emphasizing this setting as a potential reservoir of microbial pathogens threatening human, animal, and environmental health. Additionally, this research helps to provide a sampling and analysis protocol proposal to evaluate the microbiological contamination in these facilities. Few articles were found reporting fungal contamination in poultry farms worldwide. In addition, information concerning fungal resistance profile and mycotoxin contamination remain scarce. Overall, a One Health approach should be incorporated in exposure assessments and the knowledge gaps identified in this paper should be addressed in further research.
Gomes, Bianca (ORCID:0000000262646072)↗
Systematics and Consequences of Comet Nucleus Outgassing Torques
Anisotropic outgassing from comets exerts a torque sufficient to rapidly change the angular momentum of the nucleus, potentially leading to rotational instability. Here, we use empirical measures of spin changes in a sample of comets to characterize the torques, and to compare them with expectations from a simple model. Both the data and the model show that the characteristic spin-up timescale, τ {sub s}, is a strong function of nucleus radius, r {sub n}. Empirically, we find that the timescale for comets (most with perihelion 1–2 au and eccentricity ∼0.5) varies as τ{sub s}∼100r{sub n}{sup 2}, where r {sub n} is expressed in kilometers, and τ {sub s} is in years. The fraction of the nucleus surface that is active varies as f{sub A}∼0.1r{sub n}{sup −2}. We find that the median value of the dimensionless moment arm of the torque is k {sub T} = 0.007 (i.e., ∼0.7% of the escaping momentum torques the nucleus), with weak (<3σ) evidence for a size dependence k{sub T}∼10{sup −3}r{sub n}{sup 2}. Sub-kilometer nuclei have spin-up timescales comparable to their orbital periods, confirming that outgassing torques are quickly capable of driving small nuclei toward rotational disruption. Torque-induced rotational instability likely accounts for the paucity of sub-kilometer short-period cometary nuclei, and for the pre-perihelion destruction of sungrazing comets. Torques from sustained outgassing on small active asteroids can rival YORP torques, even for very small (≲1 g s{sup −1}) mass-loss rates. Finally, we highlight the important role played by observational biases in the measured distributions of τ {sub s}, f {sub A}, and k {sub T}.
71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
A Systematic Exploration of Kilonova Candidates from Neutron Star Mergers during the Third Gravitational-wave Observing Run
We present a comprehensive analysis of 653 optical candidate counterparts reported during the third gravitational-wave (GW) observing run. Our sample concentrates on candidates from the 15 events (published in GWTC-2, GWTC-3, or not retracted on GraceDB) that had a >1% chance of including a neutron star in order to assess their viability as true kilonovae. In particular, we leverage tools available in real time, including pre-merger detections and cross-matching with catalogs (i.e., point-source, variable-star, quasar and host-galaxy redshift data sets), to eliminate 65% of candidates in our sample. We further employ spectroscopic classifications, late-time detections, and light-curve behavior analyses and conclude that 66 candidates remain viable kilonovae. These candidates lack sufficient information to determine their classifications, and the majority would require luminosities greater than that of AT 2017gfo. Pre-merger detections in public photometric survey data and comparison of cataloged host-galaxy redshifts with the GW event distances are critical to incorporate into vetting procedures, as these tools eliminated >20% and >30% of candidates, respectively. We expect that such tools that leverage archival information will significantly reduce the strain on spectroscopic and photometric follow-up resources in future observing runs. Finally, we discuss the critical role prompt updates from GW astronomers to the EM community play in reducing the number of candidates requiring vetting.
79 ASTRONOMY AND ASTROPHYSICS↗
The NGC 3109 Satellite System: The First Systematic Resolved Search for Dwarf Galaxies Around an SMC-mass Host
We report the results of the deepest search to date for dwarf galaxies around NGC 3109, a barred spiral galaxy with a mass similar to that of the Small Magellanic Cloud (SMC), using a semiautomated search method. Using the Dark Energy Camera, we survey a region covering a projected distance of ∼70 kpc of NGC 3109 (D = 1.3 Mpc, R vir ∼ 90 kpc, M ∼ 10 8 M*) as part of the MADCASH and DELVE-DEEP programs. We introduce a newly developed semiresolved search method, used alongside a resolved search, to identify crowded dwarf galaxies around NGC 3109. Using both approaches, we successfully recover the known satellites Antlia and Antlia B. We identified a promising candidate, which was later confirmed to be a background dwarf through deep follow-up observations. Our detection limits are well defined, with the sample ∼80% complete down to M V ∼ −8.0, and include detections of dwarf galaxies as faint as M V ∼ −6.0. This is the first comprehensive study of a satellite system through resolved stars around an SMC mass host. Our results show that NGC 3109 has more bright (M V ∼ −9.0) satellites than the mean predictions from cold dark matter models, but well within the host-to-host scatter. A larger sample of LMC/SMC-mass hosts is needed to test whether or not the observations are consistent with current model expectations.
79 ASTRONOMY AND ASTROPHYSICS↗
Systematically Measuring Ultra-diffuse Galaxies (SMUDGes). V. The Complete SMUDGes Catalog and the Nature of Ultradiffuse Galaxies
We present the completed catalog of ultradiffuse galaxy (UDG) candidates (7070 objects) from our search of the DR9 Legacy Survey images, including distance and total mass estimates for 1529 and 1436 galaxies, respectively, that we provide and describe in detail. From the sample with estimated distances, we obtain a sample of 585 UDGs (μ 0, g ≥ 24 mag arcsec –2 and r e ≥ 1.5 kpc) over 20,000 square degrees of sky in various environments. We conclude that UDGs in our sample are limited to 10 10 ≲ M h /M ⊙ ≲ 10 11.5 and are on average a factor of 1.5–7 deficient in stars relative to the general population of galaxies of the same total mass. That factor increases with increasing galaxy size and mass up to a factor of ~10 when the total mass of the UDG increases beyond M h = 10 11 M ⊙ . We do not find evidence that this factor has a dependence on the UDGs large-scale environment.
79 ASTRONOMY AND ASTROPHYSICS↗
The CAI Database: 26 Al– 26 Mg Isotope Systematics
We present a publicly available calcium–aluminum-rich inclusion (CAI) database that focuses on the initial 26 Al/ 27 Al 0 ratio in CAIs, designed in a way that researchers in cosmochemistry and astrophysics may find useful. To date, the database contains 497 CAIs from 75 peer-reviewed papers. The CAIs are from all chondrite groups and cover different CAI types, textures, and sizes. The database includes the paper; the host meteorite; the CAI name and type; the 26 Al/ 27 Al 0 , δ 26 Mg$^*_0$, and δ 25 Mg values and their uncertainties; the number of regression points; the maximum 27 Al/ 24 Mg; the mean-squared weighted deviation; the CAI size; and CAI descriptions. We grouped the CAIs in different ways to discuss 26 Al/ 27 Al 0 ratio distributions with implications for the CAI formation timeline. Overall, we agree with previous authors that CAIs have a bimodal 26 Al distribution: CAIs with robust isochrons (n = 151) have a median 26 Al/ 27 Al 0 = 4.8 × 10 −5 (with a 1σ standard error of 0.1), while those with isotopic anomalies (n = 87) have a median 26 Al/ 27 Al 0 = 0.3 × 10 −5 (with a 1σ standard error of 0.2). However, the large standard deviation of both groups (1.3 and 2.3, respectively) indicates that the 26 Al/ 27 Al 0 values scatter significantly within each population. CAI types and groups can have distinct 26 Al/ 27 Al 0 and δ 26 Mg$^*_0$, but the unmelted inclusions (n = 33) have the highest median 26 Al/ 27 Al 0 = 5.1 × 10 −5 and a low median δ 26 Mg$^*_0$ = −0.05‰. We find slightly different 26 Al/ 27 Al 0 distributions between CAI chondrite types, but no differences between petrographic types or sizes. These observations can help us to understand CAI formation in the context of astrophysical models.
Astronomy and AstroPhysics↗
The Timing of Potential Last Nucleosynthetic Injections into the Protosolar Molecular Cloud Inferred from 41 Ca– 26 Al Systematics of Bulk CAIs
Short-lived radionuclides (SLRs) provide important information about the chronology of the early solar system. Among them, 41 Ca, due to its decay to 41 K with a half-life of only 0.1 Ma, is particularly valuable in constraining the timescales and origins of both SLRs and the formation of the oldest solar system materials, the Ca–Al-rich inclusions (CAIs). The initial abundance of 41Ca in the solar system, expressed as the ( 41 Ca/ 40 Ca)I ratio, is the key to unveiling the origin of this nuclide. Here, we report a new solar system ( 41 Ca/ 40 Ca)I ratio of 2.0 × 10 −8 derived from the K isotope compositions of two CAIs. This new ratio is about four times higher than the previous value inferred from a mineral isochron. Such a high ( 41 Ca/ 40 Ca)I ratio in the CAIs exceeds that expected for the protosolar molecular cloud by ∼1000×, implying very late injection of the 41 Ca (and possibly other SLRs) into the protosolar molecular cloud. The correlated enrichments of 41 Ca and 26 Al in the bulk CAI samples hint at a common stellar origin of both SLRs. The injection time estimated from our new data depends on the stellar source—it ranges from 0.6 Ma for a Wolf–Rayet wind to 1.0 Ma for a TP-AGB star ejecta.
79 ASTRONOMY AND ASTROPHYSICS↗