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At least 487 records · Page 27
All sourcesNASA NTRSDOE OSTI
DOE OSTI2016

Repulsive tip tilting as the dominant mechanism for hydrogen bond-like features in atomic force microscopy imaging

Experimental atomic force microscopy (AFM) studies have reported distinct features in regions with little electron density for various organic systems. These unexpected features have been proposed to be a direct visualization of intermolecular hydrogen bonding. Here, we apply a computational method using ab initio real-space pseudopotentials along with a scheme to account for tip tilting to simulate AFM images of the 8-hydroxyquinoline dimer and related systems to develop an understanding of the imaging mechanism for hydrogen bonds. We find that contrast for the observed “hydrogen bond” feature comes not from the electrostatic character of the bonds themselves but rather from repulsive tip tilting induced by neighboring electron-rich atoms.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2016

Spectral survey of helium lines in a linear plasma device for use in HELIOS imaging

Fast visible cameras and a filterscope are used to examine the visible light emission from Oak Ridge National Laboratory’s Proto-MPEX. The filterscope has been configured to perform helium line ratio measurements using emission lines at 667.9, 728.1, and 706.5 nm. The measured lines should be mathematically inverted and the ratios compared to a collisional radiative model (CRM) to determine T{sub e} and n{sub e}. Increasing the number of measurement chords through the plasma improves the inversion calculation and subsequent T{sub e} and n{sub e} localization. For the filterscope, one spatial chord measurement requires three photomultiplier tubes (PMTs) connected to pellicle beam splitters. Multiple, fast visible cameras with narrowband filters are an alternate technique for performing these measurements with superior spatial resolution. Each camera contains millions of pixels; each pixel is analogous to one filterscope PMT. The data can then be inverted and the ratios compared to the CRM to determine 2-dimensional “images” of T{sub e} and n{sub e} in the plasma. An assessment is made in this paper of the candidate He I emission lines for an imaging technique.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
DOE OSTI2019

Three-dimensional optical trapping and orientation of microparticles for coherent X-ray diffraction imaging

Optical trapping has been implemented in many areas of physics and biology as a noncontact sample manipulation technique to study the structure and dynamics of nano-andmesoscale objects. It provides a unique approach for manipulating microscopic objects without inducing undesired changes in structure. Combining optical trapping with hard X-ray microscopy techniques, such as coherent diffraction imaging and crystallography, provides a nonperturbing environment where electronic and structural dynamics of an individual particle in solution can be followed in situ. It was previously shown that optical trapping allows the manipulation of micrometer-sized objects for Xray fluorescence imaging. However, questions remain over the ability of optical trapping to position objects for X-ray diffraction measurements, which have stringent requirements for angular stability. Our work demonstrates that dynamic holographic optical tweezers are capable of manipulating single micrometer-scale anisotropic particles in a microfluidic environment with the precision and stability required for X-ray Bragg diffraction experiments-thus functioning as an "optical goniometer." The methodology can be extended to a variety of X-ray experiments and the Bragg coherent diffractive imaging of individual particles in solution, as demonstrated here, will be markedly enhanced with the advent of brighter, coherent X-ray sources.

Gao, Yuan↗
DOE OSTI2014

Validation of deformable image registration algorithms on CT images of ex vivo porcine bladders with fiducial markers

Purpose: The spatial accuracy of deformable image registration (DIR) is important in the implementation of image guided adaptive radiotherapy techniques for cancer in the pelvic region. Validation of algorithms is best performed on phantoms with fiducial markers undergoing controlled large deformations. Excised porcine bladders, exhibiting similar filling and voiding behavior as human bladders, provide such an environment. The aim of this study was to determine the spatial accuracy of different DIR algorithms on CT images ofex vivo porcine bladders with radiopaque fiducial markers applied to the outer surface, for a range of bladder volumes, using various accuracy metrics. Methods: Five excised porcine bladders with a grid of 30–40 radiopaque fiducial markers attached to the outer wall were suspended inside a water-filled phantom. The bladder was filled with a controlled amount of water with added contrast medium for a range of filling volumes (100–400 ml in steps of 50 ml) using a luer lock syringe, and CT scans were acquired at each filling volume. DIR was performed for each data set, with the 100 ml bladder as the reference image. Six intensity-based algorithms (optical flow or demons-based) implemented in theMATLAB platform DIRART, a b-spline algorithm implemented in the commercial software package VelocityAI, and a structure-based algorithm (Symmetric Thin Plate Spline Robust Point Matching) were validated, using adequate parameter settings according to values previously published. The resulting deformation vector field from each registration was applied to the contoured bladder structures and to the marker coordinates for spatial error calculation. The quality of the algorithms was assessed by comparing the different error metrics across the different algorithms, and by comparing the effect of deformation magnitude (bladder volume difference) per algorithm, using the Independent Samples Kruskal-Wallis test. Results: The authors found good structure accuracy without dependency on bladder volume difference for all but one algorithm, and with the best result for the structure-based algorithm. Spatial accuracy as assessed from marker errors was disappointing for all algorithms, especially for large volume differences, implying that the deformations described by the registration did not represent anatomically correct deformations. The structure-based algorithm performed the best in terms of marker error for the large volume difference (100–400 ml). In general, for the small volume difference (100–150 ml) the algorithms performed relatively similarly. The structure-based algorithm exhibited the best balance in performance between small and large volume differences, and among the intensity-based algorithms, the algorithm implemented in VelocityAI exhibited the best balance. Conclusions: Validation of multiple DIR algorithms on a novel physiological bladder phantom revealed that the structure accuracy was good for most algorithms, but that the spatial accuracy as assessed from markers was low for all algorithms, especially for large deformations. Hence, many of the available algorithms exhibit sufficient accuracy for contour propagation purposes, but possibly not for accurate dose accumulation.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2014

TU-A-19A-01: Image Registration I: Deformable Image Registration, Contour Propagation and Dose Mapping: 101 and 201

Deformable image registration, contour propagation and dose mapping have become common, possibly essential tools for modern image-guided radiation therapy. Historically, these tools have been largely developed at academic medical centers and used in a rather limited and well controlled fashion. Today these tools are now available to the radiotherapy community at large, both as stand-alone applications and as integrated components of both treatment planning and treatment delivery systems. Unfortunately, the details of how these tools work and their limitations are not generally documented or described by the vendors that provide them. Although “it looks right”, determining that unphysical deformations may have occurred is crucial. Because of this, understanding how and when to use, and not use these tools to support everyday clinical decisions is far from straight forward. The goal of this session will be to present both the theory (basic and advanced) and practical clinical use of deformable image registration, contour propagation and dose mapping. To the extent possible, the “secret sauce” that different vendor use to produce reasonable/acceptable results will be described. A detailed explanation of the possible sources of errors and actual examples of these will be presented. Knowing the underlying principles of the process and understanding the confounding factors will help the practicing medical physicist be better able to make decisions (about making decisions) using these tools available. Learning Objectives: Understand the basic (101) and advanced (201) principles of deformable image registration, contour propagation and dose mapping data mapping. Understand the sources and impact of errors in registration and data mapping and the methods for evaluating the performance of these tools. Understand the clinical use and value of these tools, especially when used as a “black box”.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2014

WE-D-18C-01: Art of Imaging: Diagnostic Ultrasound Image Artifacts

Assumptions followed during construction of B-mode and color flow images are that the pulse-echo transit time can be converted to reflector depth through uniform tissue models, echoes originate only from locations along the transmit-receive axes of pulse propagation, and first order correction schemes adequately account for acoustic wave attenuation and absorption. The latter allows the display brightness to encode tissue echogenicity. This course will challenge participants to identify imaging artifacts whose origins stem from the more complex and realistic propagating and scattering conditions common in clinical ultrasound. Speckle, a very common artifact but a clinically employed feature, originates from simultaneous echoes from diffuse scatterers and is a result of coherent detection of signals. One of the most bothersome artifacts are those due to reverberations especially that originating from superficial tissue interfaces. Methods to overcome these will be discussed. This presentation also will describe and illustrate speed of sound, refraction, enhancement, shadowing, mirroring, beam width, beam-forming, and slice thickness artifacts. All are useful examples of limitations introduced by acoustic waves propagating through complex tissue paths. New formats for physician board certification exams are demanding the inclusion of image-based examples of ultrasound physics. Instructors' knowledge of, and access to examples of ultrasound artifacts are important in this effort. The presentation will incorporate an audience response system to challenge participants in correct identification of some of these artifacts. Learning Objectives: Review basic mechanisms for producing ultrasound images. Identify the etiology of speckle, reverberation noise, beam width and slice thickness artifacts, and artifacts associated with pulse propagation. Discuss methods that reduce the impact of artifacts OR employ artifacts effectively to facilitate clinical diagnosis.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2015

SU-E-J-58: Comparison of Conformal Tracking Methods Using Initial, Adaptive and Preceding Image Frames for Image Registration

Purpose: Accounting for tumor motion during radiation therapy is important to ensure that the tumor receives the prescribed dose. Increasing the field size to account for this motion exposes the surrounding healthy tissues to unnecessary radiation. In contrast to using motion-encompassing techniques to treat moving tumors, conformal radiation therapy (RT) uses a smaller field to track the tumor and adapts the beam aperture according to the motion detected. This work investigates and compares the performance of three markerless, EPID based, optical flow methods to track tumor motion with conformal RT. Methods: Three techniques were used to track the motions of a 3D printed lung tumor programmed to move according to the tumor of seven lung cancer patients. These techniques utilized a multi-resolution optical flow algorithm as the core computation for image registration. The first method (DIR) registers the incoming images with an initial reference frame, while the second method (RFSF) uses an adaptive reference frame and the third method (CU) uses preceding image frames for registration. The patient traces and errors were evaluated for the seven patients. Results: The average position errors for all patient traces were 0.12 ± 0.33 mm, −0.05 ± 0.04 mm and −0.28 ± 0.44 mm for CU, DIR and RFSF method respectively. The position errors distributed within 1 standard deviation are 0.74 mm, 0.37 mm and 0.96 mm respectively. The CU and RFSF algorithms are sensitive to the characteristics of the patient trace and produce a wider distribution of errors amongst patients. Although the mean error for the DIR method is negatively biased (−0.05 mm) for all patients, it has the narrowest distribution of position error, which can be corrected using an offset calibration. Conclusion: Three techniques of image registration and position update were studied. Using direct comparison with an initial frame yields the best performance. The authors would like to thank Dr.YeLin Suh for making the Cyberknife dataset available to us. Scholarship funding from the Natural Sciences and Engineering Research Council of Canada (NSERC) and CancerCare Manitoba Foundation is acknowledged.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2017

Improvement of the optical image reconstruction based on multiplexed quantum ghost images

Ghost imaging allows one to obtain information on an object from the spatial correlation function between photons propagating through or reflected from the object and photons of the reference arm. In this case, detection in the object arm is performed over the entire aperture of the beam and, therefore, it does not give information on the object. The reference beam does not interact with the object, but is recorded with a scanning point detector or a CCD array permitting the measurement of the spatial correlation function of photons in two arms. The use of multimode entangled quantum light beams by illuminating the object by one beam and orienting other beams to reference arms makes it possible to obtain simultaneously several ghost images (GIs). Cross correlations of multiplexed GIs (MGIs) are determined by eighth-order field correlation functions. A special algorithm is developed for calculating higher-order correlations of Bose operators. The presence of GI cross correlations is used for improving the quality of the reconstructed object’s image by their processing using the measurement reduction method. An example of the computer simulation of the image reconstruction by MGIs formed in the field of four-frequency entangled quantum states is considered. It is found that in this case the reduced GI has a signal-to-noise ratio several times higher than that of GIs.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2016

THE FIRST FOCUSED HARD X-RAY IMAGES OF THE SUN WITH NuSTAR

We present results from the the first campaign of dedicated solar observations undertaken by the Nuclear Spectroscopic Telescope ARray ( NuSTAR ) hard X-ray (HXR) telescope. Designed as an astrophysics mission, NuSTAR nonetheless has the capability of directly imaging the Sun at HXR energies (>3 keV) with an increase in sensitivity of at least two magnitude compared to current non-focusing telescopes. In this paper we describe the scientific areas where NuSTAR will make major improvements on existing solar measurements. We report on the techniques used to observe the Sun with NuSTAR , their limitations and complications, and the procedures developed to optimize solar data quality derived from our experience with the initial solar observations. These first observations are briefly described, including the measurement of the Fe K-shell lines in a decaying X-class flare, HXR emission from high in the solar corona, and full-disk HXR images of the Sun.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2017

Imaging the Thickness of Passivation Layers for Crystalline Silicon with Micron‐Scale Spatial Resolution Using Spectral Photoluminescence

Thin films deposited on crystalline silicon surfaces are critical components of many silicon‐based devices, including high‐efficiency photovoltaic cells. Knowledge of their optical and electronic properties is important in designing and fabricating efficient solar cells, especially as the device complexity increases and includes micron‐scale features. Here, a camera‐based photoluminescence (PL) technique is developed to image the thickness of specific passivating films on silicon wafers. The technique is entirely contactless and nondestructive, requires minimal sample preparation, and provides a large dynamic range in terms of field of view, with micron‐scale spatial resolution possible. It retains the advantages of PL imaging, a mainstream technique for photovoltaic material and device characterization, and it has some extra capabilities similar to those of ellipsometry. This newly developed technique is demonstrated on hydrogenated amorphous silicon and silicon nitride films, two important passivation technologies for high‐efficiency silicon solar cells.

Nguyen, Hieu T.↗
DOE OSTI2018

Effects of Magnetic and Electric Field Uniformity on Coded Aperture Imaging Quality in a Cycloidal Mass Analyzer

Cycloidal mass analyzers are unique sector mass analyzers as they exhibit perfect double focusing, making them ideal for incorporating spatial aperture coding, which can increase the throughput of a mass analyzer without affecting the resolving power. However, the focusing properties of the cycloidal mass analyzer depend on the uniformity of the electric and magnetic fields. In this paper, finite element simulation and charged particle tracing were used to investigate the effect of field uniformity on imaging performance of a cycloidal mass analyzer. For the magnetic field, we evaluate a new permanent magnet geometry by comparing it to a traditional geometry. Results indicate that creating an aperture image in a cycloidal mass spectrometer with the same FWHM as the slit requires less than 1% variation in magnetic field strength along the ion trajectories. The new magnet design, called the opposed dipole magnet, has less than 1% field variation over an area approximately 62 × 65 mm; nearly twice the area available in a traditional design of similar size and weight. This allows ion imaging across larger detector arrays without loss of resolving power. In addition, we compare the aperture imaging quality of a traditionally used cycloidal mass spectrometer electric design with a new optimized design with improved field uniformity. .

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
DOE OSTI2016

Molecular imaging to guide systemic cancer therapy: Illustrative examples of PET imaging cancer biomarkers

Molecular imaging agents have the ability to non-invasively visualize, characterize, and quantify the molecular biology of disease. Recent advances in nuclear probe development, particularly in PET radiotracers, have generated many new imaging agents with precise molecular targets. With such specificity, PET probes may be utilized as biomarkers to objectively interrogate and evaluate pathology. Whereas the current indications for PET imaging are predominately confined to staging and restaging of malignancy, the utility of PET greatly expands when utilized as a biomarker, the topic of this review. As an imaging biomarker, PET may be used to (1) measure target expression to select subsets of patients who would most benefit from targeted therapy; (2) measure early treatment response to predict therapeutic efficacy; and (3) relate tumor response to survival. This work will discuss the application of radiotracers to targeted cancer therapy. Particular attention is given to new radiotracers evaluated in recently completed clinical trials and those with current or potential clinical utility. The diverse roles of PET in clinical trails for drug development are also examined.

62 RADIOLOGY AND NUCLEAR MEDICINE↗
DOE OSTI2021

Enabling phase quantification of anhydrous cements via Raman imaging

The phase composition of Portland cements is typically determined using conventional techniques like X-ray Diffraction (XRD) Rietveld analysis, optical microscopy point counting, and electron microscopy. However, these techniques have several limitations that may affect their accuracy in certain sample-specific scenarios. Here, we report a highly accurate phase quantification of 11 different types of commercial, anhydrous cements using a new and complementary technique: Raman imaging. Specifically, for the 4 principal phases, composition from our extensive data (250,000 Raman spectra per sample, error < 0.71%) and those obtained from XRD Rietveld and supplier data have high coefficients of determination (R{sup 2} > 0.98, mean deviation <2%). Additionally, we also quantify 8 secondary phases present in cement clinkers (gypsum, anhydrite, bassanite, syngenite, dolomite, calcite, quartz, and portlandite) with a high degree of confidence, thereby demonstrating that Raman imaging is a highly versatile tool for anhydrous phase quantification in a broad variety of cements.

36 MATERIALS SCIENCE↗
DOE OSTI2015

X-Ray Radar Imaging Technique Using a 2 Mev Linear Electron Accelerator

X-ray radar imaging, patented in 2013 by James R. Wood, combines standard radar techniques with the penetration power of x-rays to image scenes. Our project strives to demonstrate the technique using a 2 MeV linear electron accelerator (linac) to generate the S-band–modulated x-ray signals. X-ray detectors such as photodiodes and scintillators are used to detect the signals in backscatter and transmission detection schemes. The S-band microstructure is imposed on the variable-width electron pulse, and this modulation carries over to the bremsstrahlung x-rays after the electron beam is incident upon a copper-tungsten alloy target. Using phase/distance calculations and a low-jitter timing system, we expect to detect different object distances by comparing the measured phase differences. The experimental setup, which meets strict jitter requirements, and preliminary experimental results are presented.

43 PARTICLE ACCELERATORS↗
DOE OSTI2019

Imaging Individual Barium Atoms in Solid Xenon for Barium Tagging in nEXO

The search for neutrinoless double beta decay probes the fundamental properties of neutrinos, including whether or not the neutrino and antineutrino are distinct. Double beta detectors are large and expensive, so background reduction is essential for extracting the highest sensitivity. The identification, or “tagging”, of the 136Ba daughter atom from double beta decay of 136Xe provides a technique for eliminating backgrounds in the nEXO neutrinoless double beta decay experiment. The tagging scheme studied in this work utilizes a cryogenic probe to trap the barium atom in solid xenon, where the barium atom is tagged via fluorescence imaging in the solid xenon matrix. Here we demonstrate imaging and counting of individual atoms of barium in solid xenon by scanning a focused laser across a solid xenon matrix deposited on a sapphire window. When the laser sits on an individual atom, the fluorescence persists for ~30 s before dropping abruptly to the background level, a clear confirmation of one-atom imaging. No barium fluorescence persists following evaporation of a barium deposit to a limit of =0.16%. This is the first time that single atoms have been imaged in solid noble element. It establishes the basic principle of a barium tagging technique for nEXO.

Chambers, C↗