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At least 487 records · Page 27

Absorption filaments toward the massive clump G0.253+0.016

ALMA HCO{sup +} observations of the infrared dark cloud G0.253+0.016 located in the central molecular zone of the Galaxy are presented. The 89 GHz emission is area-filling, optically thick, and sub-thermally excited. Two types of filaments are seen in absorption against the HCO{sup +} emission. Broad-line absorption filaments (BLAs) have widths of less than a few arcseconds (0.07-0.14 pc), lengths of 30-50 arcsec (1.2-1.8 pc), and absorption profiles extending over a velocity range larger than 20 km s{sup –1}. The BLAs are nearly parallel to the nearby G0.18 non-thermal filaments and may trace HCO{sup +} molecules gyrating about highly ordered magnetic fields located in front of G0.253+0.016 or edge-on sheets formed behind supersonic shocks propagating orthogonal to our line of sight in the foreground. Narrow-line absorption filaments (NLAs) have line widths less than 20 km s{sup –1}. Some NLAs are also seen in absorption in other species with high optical depth, such as HCN, and occasionally in emission where the background is faint. The NLAs, which also trace low-density, sub-thermally excited HCO{sup +} molecules, are mostly seen on the blueshifted side of the emission from G0.253+0.016. If associated with the surface of G0.253+0.016, the kinematics of the NLAs indicate that the cloud surface is expanding. The decompression of entrained, milli-Gauss magnetic fields may be responsible for the re-expansion of the surface layers of G0.253+0.016 as it recedes from the Galactic center following a close encounter with Sgr A.

79 ASTRONOMY AND ASTROPHYSICS↗

The phase diagram of Ti-6Al-4V at high-pressures and high-temperatures

We report results from a series of diamond-anvil-cell synchrotron x-ray diffraction and large-volume-press experiments, and calculations, to investigate the phase diagram of commercial polycrystalline high-strength Ti-6Al-4V alloy in pressure–temperature space. Up to ~30 GPa and 886 K, Ti-6Al-4V is found to be stable in the hexagonal-close-packed, or α phase. The effect of temperature on the volume expansion and compressibility of α–Ti-6Al-4V is modest. The martensitic α → ω (hexagonal) transition occurs at ~30 GPa, with both phases coexisting until at ~38–40 GPa the transition to the ω phase is completed. Between 300 K and 844 K the α → ω transition appears to be independent of temperature. ω–Ti-6Al-4V is stable to ~91 GPa and 844 K, the highest combined pressure and temperature reached in these experiments. Pressure–volume–temperature equations-of-state for the α and ω phases of Ti-6Al-4V are generated and found to be similar to pure Ti. A pronounced hysteresis is observed in the ω–Ti-6Al-4V on decompression, with the hexagonal structure reverting back to the α phase at pressures below ~9 GPa at room temperature, and at a higher pressure at elevated temperatures. Based on our data, we estimate the Ti-6Al-4V α–β–ω triple point to occur at ~900 K and 30 GPa, in good agreement with our calculations.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Fish Passage though Hydropower Turbines: Simulating Blade Strike using the Discrete Element Method

mong the hazardous hydraulic conditions affecting anadromous and resident fish during their passage though turbine flows, two are believed to cause considerable injury and mortality: collision on moving blades and decompression. Several methods are currently available to evaluate these stressors in installed turbines, i.e. using live fish or autonomous sensor devices, and in reduced-scale physical models, i.e. registering collisions from plastic beads. However, a priori estimates with computational modeling approaches applied early in the process of turbine design can facilitate the development of fish-friendly turbines. In the present study, we evaluated the frequency of blade strike and nadir pressure environment by modeling potential fish trajectories with the Discrete Element Method (DEM) applied to fish-like composite particles. In the DEM approach, particles are subjected to realistic hydraulic conditions simulated with computational fluid dynamics (CFD), and particle-structure interactions—representing fish collisions with turbine blades—are explicitly recorded and accounted for in the calculation of particle trajectories. We conducted transient CFD simulations by setting the runner in motion and allowing for better turbulence resolution, a modeling improvement over the conventional practice of simulating the system in steady state which was also done here. While both schemes yielded comparable bulk hydraulic performance, transient conditions exhibited a visual improvement in describing flow variability. We released streamtraces (steady flow solution) and DEM particles (transient solution) at the same location from where sensor fish (SF) have been released in field studies of the modeled turbine unit. The streamtrace-based results showed a better agreement with SF data than the DEM-based nadir pressures did because the former accounted for the turbulent dispersion at the intake but the latter did not. However, the DEM-based strike frequency is more representative of blade-strike probability than the steady solution is, mainly because DEM particles accounted for the full fish length, thus resolving (instead of modeling) the collision event.

CFD↗

In situ compression artifact removal in scientific data using deep transfer learning and experience replay

The massive amount of data produced during simulation on high-performance computers has grown exponentially over the past decade, exacerbating the need for streaming compression and decompression methods for efficient storage and transfer of this data---key to realizing the full potential of large-scale computational science. Lossy compression approaches such as JPEG when applied to scientific simulation data realized as a stream of images can achieve good compression rates but at the cost of introducing compression artifacts and loss of information. This paper develops a unified framework for in situ compression artifact removal in which the fully convolutional neural network architectures are combined with scalable training, transfer learning, and experience replay to achieve superior accuracy and efficiency while significantly decreasing the storage footprint as compared with the traditional optimization-based approaches. We demonstrate the proposed approach and compare it with compressed sensing postprocessing and other baseline deep learning models using climate simulations and nuclear reactor simulations, both of which are driven by hyperbolic partial differential equations. Our approach when applied to remove the compression artifacts on the JPEG-compressed nuclear reactor simulation data (using a transfer-trained model that was pretrained on the climate simulation data and updated incrementally as the nuclear reactor simulation progressed), achieved a significant improvement---mean peak signal-to-noise ratio of 42.438 as compared with 27.725 obtained with the compressed sensing approach.

97 MATHEMATICS AND COMPUTING↗

Broom: application for non-redundant storage of high throughput sequencing data

Abstract Motivation The data generation capabilities of high throughput sequencing (HTS) instruments have exponentially increased over the last few years, while the cost of sequencing has dramatically decreased allowing this technology to become widely used in biomedical studies. For small labs and individual researchers, however, storage and transfer of large amounts of HTS data present a significant challenge. The recent trends in increased sequencing quality and genome coverage can be used to reconsider HTS data storage strategies. Results We present Broom, a stand-alone application designed to select and store only high-quality sequencing reads at extremely high compression rates. Written in C++, the application accepts single and paired-end reads in FASTQ and FASTA formats and decompresses data in FASTA format. Availability and implementation C++ code available at https://scsb.utmb.edu/labgroups/fofanov/broom.asp. Supplementary information Supplementary data are available at Bioinformatics online.

Albayrak, Levent↗

Li-ion battery material under high pressure: amorphization and enhanced conductivity of Li 4 Ti 5 O 12

Lithium titanium oxide (Li 4 Ti 5 O 12 , LTO), a 'zero-strain' anode material for lithium-ion batteries, exhibits excellent cycling performance. However, its poor conductivity highly limits its applications. Here, the structural stability and conductivity of LTO were studied using in situ high-pressure measurements and first-principles calculations. LTO underwent a pressure-induced amorphization (PIA) at 26.9 GPa. The impedance spectroscopy revealed that the conductivity of LTO improved significantly after amorphization and that the conductivity of decompressed amorphous LTO increased by an order of magnitude compared with its starting phase. Furthermore, our calculations demonstrated that the different compressibility of the LiO 6 and TiO 6 octahedra in the structure was crucial for the PIA. The amorphous phase promotes Li + diffusion and enhances its ionic conductivity by providing defects for ion migration. Our results not only provide an insight into the pressure depended structural properties of a spinel-like material, but also facilitate exploration of the interplay between PIA and conductivity.

25 ENERGY STORAGE↗

Using eclogite retrogression to track the rapid exhumation of the Pliocene Papua New Guinea UHP Terrane

The D’Entrecasteaux Islands of eastern Papua New Guinea (PNG) host the youngest known ultrahigh-pressure terrane on Earth and represent the only location where ultrahigh-pressure (UHP) rocks have been exhumed in an active rift. The PNG (U)HP rocks, consisting of Pliocene eclogites, garnet amphibolites and migmatitic gneisses, are exposed in five domal structures across the Islands. Zirconium-in-rutile thermometry records peak temperatures of ~780°C from the eastern Oiatabu and nearby central Mailolo Domes, and hotter temperatures of ~825–865°C within the western Goodenough Dome. Uranium–lead (U–Pb) and trace element zircon compositions from a suite of eclogite, host gneiss, felsic dikes and pegmatite from three domes document the rapid exhumation history of the PNG UHP terrane. High-spatial resolution laser-ablation split-stream inductively coupled plasma-mass spectrometry (LASS ICP-MS) analyses of select eclogite zircons exhibit no resolvable age zoning within single crystals. The same eclogite zircons, combined with separate zircons extracted from additional eclogite, host gneiss and felsic intrusions, were subsequently analysed by high-precision U–Pb chemical-abrasion isotope-dilution thermal ionization mass spectrometry and solution ICP-MS trace element analysis (TIMS-TEA). The results record discrete tectonic events across the three domes at sub-million year timescales: (1) (re)crystallization of host gneiss within the lower crust exposed in the eastern Oiatabu Dome from c.5·7–4·5 Ma; (2) initial retrogression and local decompression melting of eclogites from the Oiatabu and Mailolo Domes at c.4·6–4·3 Ma; (3) melt crystallization of weakly deformed felsic dikes of the Oiatabu Dome at c.3·0–2·9 Ma; and (4) retrogression and melt crystallization within eclogite–amphibolite-facies rocks in the western Goodenough Dome at c.2·9–2·6 Ma. In comparison to Zr-in-rutile peak temperature estimates, Ti-in-zircon temperatures >800°C may reflect increased temperatures during exhumation that resulted in partial melting of the eclogites. Inclusions of crystallized hydrous melt consisting of Na-rich plagioclase ± K-feldspar + quartz within eclogite zircons document this process. The elevated temperatures and the presence of the polyphase inclusions are the first documentation of partial melting of the (U)HP eclogites within PNG during initial retrogression from c.4·6–4·3 Ma. Finally, overall, U–Pb zircon geochronology and geochemistry track both the timing of retrogressive overprinting within the lower-to-middle crust and final upper crustal emplacement over a relatively short span of ~2 Myr during the rapid (≥2·3 cm/yr) exhumation of the youngest known (U)HP eclogites.

58 GEOSCIENCES↗

Experimental observations of large changes in electron density distributions in β - Ge

We report the electron density distributions in β-Ge have been experimentally determined at in situ high-pressure conditions using synchrotron diffraction techniques in a diamond anvil cell. Upon decompression, the electron density along the $c$ axis in tetragonal β-Ge displays a sudden drop at 10–11 GPa close to that of the structural α-β transition, while the β-Ge samples remain as single crystals until transforming to metastable Ge phases around 6.7–8.5 GPa. In contrast to the covalently bonded α-Ge that displays only a weak participation of $d$ electrons in the valence band under compression above 7.7 GPa, our experimental results suggest that a large change in $d$-orbital participation can occur in the β-Ge lattice which has mixed covalent and metallic bonding. The β-Ge below 10 GPa may display large fluctuations in electronic properties, which sheds light for exploring novel materials with intriguing electronic and optical properties.

36 MATERIALS SCIENCE↗

High-pressure synthesis and thermodynamic stability of PdH 1±ε up to 8 GPa

Palladium hydride alloys are superconductors and hydrogen storage materials. One synthesis route is compression of Pd to high pressure in a hydrogen-rich environment. Here we report the evolution of the unit cell volume of PdH x synthesized by compressing Pd in a pure H 2 medium to pressures from 0.2 to 8 GPa in a diamond anvil cell at room temperature. The volume of the face-centered cubic unit cell changes nonmonotonically with pressure, increasing upon compression from 0.2 to 1 GPa and decreasing upon compression from 1 to 8 GPa. Volume is reversible upon decompression and is independent of whether the sample was heated to 600 K at low pressure (P < 2 GPa). The x-ray diffraction data show no evidence for a phase transition between 0.2 and 8 GPa. The volume maximum at 1 GPa must be caused by progressive hydrogenation from 0 to 1 GPa. Assuming a pressure-volume-composition equation of state derived from previously published data, the [H]:[Pd] ratio in this study increases to a maximum value of x = 1 ± 0.02 at 2 ± 0.5 GPa and remains stable upon further compression to and from 8 GPa. These results add to a mounting body of evidence that PdH 1±ϵ is in thermodynamic equilibrium with pure H 2 at room temperature from 2 GPa to at least 8 GPa. Here, the simplest interpretation is that H atoms occupy all octahedral sites and no tetrahedral sites in face-centered cubic PdH 1.0 .

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

In situ x-ray diffraction study of dynamically compressed α -cristobalite using a dynamic diamond anvil cell

Here we present results of the dynamic compression of α -cristobalite up to a pressure of 106 GPa with the use of the dynamic diamond anvil cell. X-ray diffraction images were recorded at different ramp compression and decompression rates to investigate in situ the high-pressure phase transitions of α -cristobalite. Our results suggest that the pressure onset of the phase transformation of α -cristobalite to cristobalite II, cristobalite X-I, and ultimately to seifertite ( α – PbO 2 type SiO 2 ) is dependent on the applied compression rates and stress conditions of the experiment. Increasing compression rates in general shift the studied phase transitions to higher pressures. Furthermore, our results indicate for single crystals under hydrostatic conditions a suppression of a phase transition from cristobalite X-I to seifertite at pressures of up to 82 GPa.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Stability and distortion of fcc LaH 10 with path-integral molecular dynamics

The synthesis of the high-temperature superconductor LaH 10 requires pressures in excess of 100 GPa, wherein it adopts a face-centered cubic structure. Upon decompression, this structure undergoes a distortion, which still supports superconductivity, but with a lower critical temperature. Previous calculations have shown that quantum and anharmonic effects are necessary to stabilize the cubic structure, but have not resolved the low pressure distortion. Using large scale path-integral molecular dynamics enabled by a machine learned potential, we show that a rhombohedral distortion appears at sufficiently low pressures. Here, we also highlight the importance of quantum zero-point motion in stabilizing the cubic structure.

08 HYDROGEN↗

Stable high-pressure phases in the H-S system determined by chemically reacting hydrogen and sulfur

Synchrotron x-ray diffraction and Raman spectroscopy have been used to study the chemical reactions of molecular hydrogen (H 2 ) with sulfur (S) at high pressures. We find theoretically predicted Cccm and Im3¯m H 3 S to be the reaction products at 50 and 140 GPa, respectively. Im3¯m H 3 S is a stable crystalline phase above 140 GPa and it transforms to R 3 m H 3 S on pressure release below 140 GPa. Here, the latter phase is (meta)stable down to at least 70 GPa where it transforms to Cccm H 3 S upon annealing (T < 1300 K) to overcome the kinetic hindrance. Cccm H 3 S has an extended structure with symmetric hydrogen bonds at 50 GPa, and upon decompression it experiences a transformation to a molecular mixed H 2 S – H 2 structure below 40 GPa without any apparent change in the crystal symmetry.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Unraveling the structure and bonding evolution of the newly discovered iron oxide FeO 2

Recently reported synthesis of FeO 2 at high pressure has stimulated great interest in exploring this new iron oxide and elucidating its properties. Here, we present a systematic computational study of crystal structure, chemical bonding, and sound velocity of FeO 2 in a wide range of pressure. Our results establish thermodynamic stability of the experimentally observed pyrite phase (P-phase) of FeO 2 at pressures above 74 GPa and unveil two metastable FeO 2 phases in Pbcn and P4 2 /mnm symmetry at lower pressures. Simulated x-ray diffraction (XRD) spectra of Pbcn and P4 2 /mnm FeO 2 match well with measured XRD data of the decompression products of P-phase FeO 2 , providing compelling evidence for the presence of these metastable phases. Energetic calculations reveal unusually soft O-O bonds in P-phase FeO 2 stemming from a low-frequency libration mode of FeO 6 octahedra, rendering the O-O bond length highly sensitive to computational and physical environments. Calculated sound-velocity profiles of P-phase FeO 2 are markedly different from those of the Pbcn and P4 2 /mnm phases, underscoring their distinct seismic signatures. Here our findings offer insights for understanding the rich structural, bonding, and elastic behaviors of this newly discovered iron oxide.

36 MATERIALS SCIENCE↗

High-pressure investigations on the semi-Heusler compound CuMnSb

The antiferromagnetic semi-Heusler compound CuMnSb has been investigated under high pressure by electrical resistivity and angle dispersive synchrotron x-ray diffraction measurements to 53 and 36 GPa, respectively. The Néel temperature at ~50 K is found to initially increase rapidly with pressure, reaching 83 K at 7 GPa. However, near 8 GPa at ambient temperature a sluggish first-order structural transition begins from a semimetallic cubic phase to a likely semimetallic tetragonal phase; thermal cycling to 355°C at 9.6 GPa serves to complete the transition. In the tetragonal phase no sign of magnetic ordering is visible in the resistivity R ( T ) over the measured temperature range 4–295 K. This suggests that magnetic ordering may have shifted to temperatures well above ambient. Indeed, density functional calculations find the magnetic ground state in the tetragonal phase to be antiferromagnetic. In conclusion, following decompression to 1 bar at ambient temperature, the high-pressure tetragonal phase is retained.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

In situ analysis of the structural transformation of glassy carbon under compression at room temperature

Room temperature compression of graphitic materials leads to interesting superhard sp 3 rich phases which are sometimes transparent. In the case of graphite itself, the sp 3 rich phase is proposed to be monoclinic M-carbon; however, for disordered materials such as glassy carbon the nature of the transformation is unknown. We compress glassy carbon at room temperature in a diamond anvil cell, examine the structure in situ using x-ray diffraction, and interpret the findings with molecular dynamics modeling. Experiment and modeling both predict a two-stage transformation. First, the isotropic glassy carbon undergoes a reversible transformation to an oriented compressed graphitic structure. This is followed by a phase transformation at ~35 GPa to an unstable, disordered sp 3 rich structure that reverts on decompression to an oriented graphitic structure. Analysis of the simulated sp 3 rich material formed at high pressure reveals a noncrystalline structure with two different sp 3 bond lengths.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Implementing a microphysics model in hydrodynamic simulations to study the initial plasma formation in dielectric ablator materials for direct-drive implosions

A microphysics model to describe the photoionization and impact ionization processes in dielectric ablator materials like plastic has been implemented into the 1-D hydrodynamic code LILAC for planar and spherical targets. Currently, the initial plasma formation during the early stages of a laser drive are modeled in an ad hoc manner, until the formation of a critical surface. Implementation of the physics-based models predict higher values of electron density, electron temperature, and pressure than the ad hoc model. Moreover, the numerical predictions are consistent with previous experimental observations of the shinethrough mechanism in plastic ablators. For planar targets, a decompression of the rear end of the target was observed, that is similar to recent experiments. An application of this model is to understand the laser-imprint mechanism that is caused by nonuniform laser irradiation due to single beam speckle.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Observations of anomalous x-ray emission at early stages of hot-spot formation in deuterium-tritium cryogenic implosions

In DT cryogenic implosions, hot-spot x-ray self-emission is observed to begin at a larger shell radius than is predicted by a 1-D radiation-hydrodynamic implosion model. Laser-imprint is shown to explain the observation for a low-adiabat implosion. Furthermore, for more-stable implosions the data are not described by the imprint model and suggest there are additional sources of decompression of the dense fuel.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Avalanches, plasticity, and ordering in colloidal crystals under compression

Using numerical simulations we examine colloids with a long-range Coulomb interaction confined in a two-dimensional trough potential undergoing dynamical compression. As the depth of the confining well is increased, the colloids move via elastic distortions interspersed with intermittent bursts or avalanches of plastic motion. In these avalanches, the colloids rearrange to minimize their colloid-colloid repulsive interaction energy by adopting an average lattice constant that is isotropic despite the anisotropic nature of the compression. The avalanches take the form of shear banding events that decrease or increase the structural order of the system. At larger compression, the avalanches are associated with a reduction of the number of rows of colloids that fit within the confining potential, and between avalanches the colloids can exhibit partially crystalline or anisotropic ordering. The colloid velocity distributions during the avalanches have a non-Gaussian form with power law tails and exponents that are consistent with those found for the velocity distributions of gliding dislocations. We observe similar behavior when we subsequently decompress the system, and find a partially hysteretic response reflecting the irreversibility of the plastic events.

36 MATERIALS SCIENCE↗