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At least 487 records · Page 27

Merging the Machines of Modern Science

Two recent projects have harnessed supercomputing resources at the US Department of Energy’s Argonne National Laboratory in a novel way to support major fusion science and particle collider experiments. Using leadership computing resources, one team ran fine-grid analysis of real-time data to make near-real-time adjustments to an ongoing experiment, while a second team is working to integrate Argonne’s supercomputers into the Large Hadron Collider/ATLAS workflow. Together these efforts represent a new paradigm of the high-performance computing center as a partner in experimental science.

97 MATHEMATICS AND COMPUTING↗

Status of DUNE Offline Computing

We summarize the status of Deep Underground Neutrino Experiment (DUNE) Offline Software and Computing program. We describe plans for the computing infrastructure needed to acquire, catalog, reconstruct, simulate and analyze the data from the DUNE experiment and its prototypes in pursuit of the experiment's physics goals of precision measurements of neutrino oscillation parameters, detection of astrophysical neutrinos, measurement of neutrino interaction properties and searches for physics beyond the Standard Model. In contrast to traditional HEP computational problems, DUNE's Liquid Argon Time Projection Chamber data consist of simple but very large (many GB) data objects which share many characteristics with astrophysical images. We have successfully reconstructed and simulated data from 4% prototype detector runs at CERN. The data volume from the full DUNE detector, when it starts commissioning late in this decade will present memory management challenges in conventional processing but significant opportunities to use advances in machine learning and pattern recognition as a frontier user of High Performance Computing facilities capable of massively parallel processing. Our goal is to develop infrastructure resources that are flexible and accessible enough to support creative software solutions as HEP computing evolves.

43 PARTICLE ACCELERATORS↗

Modeling Hydrodynamic Instabilities, Shocks, and Radiation Waves in High Energy Density Experiments [Dissertation]

This thesis presents the computational design, modeling, and analysis of three experiments in high-energy density physics (HEDP), all of them concerning fundamental radiation flows. The first experiment is a laboratory astrophysics experiment to investigate the role of the Kelvin-Helmholtz instability (KHI) in the process of galactic filaments supplying gas to galactic halos. The achieved goal was to provide a first study in which the role of the instability is maximal and predict behavior in future iterations of an experiment accessing a more radiative regime where the role of the instability is stifled. This experiment would help answer how certain galaxies are able to grow so rapidly and produce many stars as the KHI limits this process. The second experiment, COAX, is a radiation flow experiment with a novel spectroscopy diagnostic configuration, designed to spatially measure the temperature of a radiation wave as it travels down a doped foam. A key result of this work was the development of a synthetic spectroscopy application and application of modern spectroscopy comparison techniques to provide our first temperature reconstructions from the experimental data. This experimental platform serves as the launching ground for a number of new experiments that vary the basic premise and thus is foundational to our ongoing research. The final experiment is a full integration of modeling, design, and theoretical development for the Radishock experiment. This experimental platform studies the head-on collision of a radiation wave with a counter-propagating shock, and like COAX, uses spectroscopy to diagnose and detect the interaction. My research analyzes the successful shots, indicating aspects of successful detections and suggests improvements to future iterations of the design.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Using Pilot Jobs and CernVM File System for Simplified Use of Containers and Software Distribution

High Energy Physics (HEP) experiments entail an abundance of computing resources, i.e. sites, to run simulations and analyses by processing data. This requirement is fulfilled by local batch farms, grid sites, private/commercial clouds, and supercomputing centers via High Throughput Computing (HTC). The growing needs of such experiments and resources being prone to trends of heterogeneity make it difficult for physicists to handle these resources directly. Additionally, HEP collaborations heavily rely on data and software releases, typically in the order of tens of gigabytes, while conducting simulations and analyses. Hence, aspects of scalability, reliability, and maintenance become crucial with regards to the distribution of the necessary data and software stack. The GlideinWMS [4] framework helps with the resource management problem by using pilot jobs, aka Glideins, to provision reliable elastic virtual clusters. Glideins are submitted to unreliable heterogeneous resources which are validated and customized by the Glideins to make the worker nodes available for end-user job execution. On the other hand, the CernVM File System (CernVM-FS or CVMFS) [1] helps with data distribution. It is a write-once, read-everywhere filesystem used to deploy scientific software to thousands of nodes on a worldwide distributed computing infrastructure. CVMFS is based on the Hyper Text Transfer Protocol and has been widely used within the particle physics community for (1) distributing experiment software and data such as calibrations, and (2) facilitating containerization by efficiently hosting container images along with providing containerization software, especially Singularity [3] GlideinWMS relies on CVMFS installed locally on the computing resources to satisfy the experiments' software needs. This requires system administrators' effort to install and maintain CVMFS at the sites and limits the use of sites, especially HPC resources, that do not have CVMFS installed. This poster presents a solution, taking advantage of Glideins to provide CVMFS at most sites without the need for a local installation. Doing so expands the pool of resources available for HEP experiments and reduces the effort of system administrators for current resources. Additionally, the proposed solution allows GlideinWMS to also start Singularity [3], a containerization software that can run unprivileged, on sites where neither CVMFS nor Singularity are available, including HPC sites. The benefits provided by this solution are: (1) lower overhead for site administrators in that they have less software to install, (2) an expanded pool of resources that run user jobs with easy access to software and data provided by CVMFS, thus making life easier for the scientists, and (3) improved flexibility to use HPC resources by enabling GlideinWMS pilot jobs to support HPC sites.

Urs, Namratha↗

Computing Hypergraph Homology in Chapel

In this paper, we discuss our experience in implementing homology computation, in particular Betti number calculation in Chapel hypergraph Library (CHGL). Given a dataset represented as a hypergraph, a Betti number for a particular dimension $k$ indicates how many $k$-dimensional `voids' are present in the dataset. Computing Betti number involves various array-centric and linear algebra operations. We demonstrate that implementing these operations in Chapel is both concise and intuitive. In addition, we show that Chapel provides language constructs for implementing parallel and distributed execution of the linear algebra kernels with minimal effort. Syntactically, Chapel provides succinctness of Python, while delivering comparable and better performance than C++-based and Julia-based packages for calculating Betti numbers respectively.

hypergraph, topological data analysis↗

Development of predictive capability of cycle-to-cycle variation in dual-fuel engines using supercomputing-based computational fluid dynamics

Cycle-to-cycle variation (CCV) in internal combustion engines is expected due to variabilities in operating conditions such as in-cylinder fuel stratification, mixing behavior, manifold air pressure, injection timing etc. Generally, engine experimental studies provide averaged quantities such as cylinder pressure, emissions, indicated mean effective pressure (IMEP) from multiple cycles and their CCV of IMEP, and CCV of cylinder pressure from consecutive cycles for a given test condition. Capturing 3D spatial distributions of relevant measures such as fuel-air mixing, temperature, turbulence levels and emissions from such experiments is challenging. Computational Fluid Dynamics (CFD) is an alternative to experiments, that can be used effectively to understand the spatial and temporal distributions of parameters of interest.Quantitative understanding of CCV in dual-fuel (DF) engines will accelerate the development and deployment of engines that provide fuel flexibility, economic advantage and emission compliance. Earlier work [1] performed to develop an understanding of the physics of CCV in large-bore, medium-speed, dual-fuel engines was partially successful. That effort entailed a sparse design of experiment (DOE) of full-cylinder geometry, closed-cycle, dual-fuel CFD simulations in which variabilities within some of the identified global parameters were exercised. The Coefficient of Variation (COV) of cylinder pressure was promising compared with experimental COV. This reinforced the understanding of which global parameters are significant contributors to CCV in DF combustion.The authors have used several high-performance supercomputing facilities in the process of developing predicting capability of CCV in large-bore engines, while operating in dual-fuel, diesel and natural gas (NG), combustion mode [1, 2]. In the current study CCV influencing parameters in a diesel-natural gas dual-fuel engine was studied using a 4th order DOE consisting of 137 concurrent cases. These full-geometry, closed-cycle, CFD simulations were run on the Mira supercomputing facility at the Argonne National Laboratory (ANL). This paper describes key learnings of that study along with a validation of the DOE. Further, the CCV prediction methodology, which is applicable to simulation-based design and testing, is described.

Gubba, Sreenivasa Rao↗

Modeling of Thermal Decomposition of TATB-Based Explosive for Safety Analysis

We investigate and model the cook-off behavior of LX-17 to understand the response of explosive systems in abnormal thermal environments. Decomposition has been explored via conventional ODTX (One-Dimensional Time-to-eXplosion), PODTX (ODTX with pressure-measurement), TGA (Thermo-Gravimetric Analysis), and DSC (Differential Scanning Calorimetry) experiments under isothermal and ramped temperature profiles. The data were used to fit reaction rate parameters for proposed schemes in an ALE3D computational model. This model includes chemical reactions, thermo- and hydro-dynamics, and material properties, including thermal expansion, compressibility, and strength. These parameterizations were carried out utilizing a Python evolutionary optimization method on LLNL’s high-performance computing clusters. Additional experiments are being developed to further characterize and monitor decomposition intermediates to improve the model. Once experimentally validated, this model will be scalable to several applications involving LX-17. Furthermore, the optimization methodology developed herein should be applicable to other high explosive materials.

Chemistry - Chemical explosives↗

Building the I (Interoperability) of FAIR for performance reproducibility of large-scale composable workflows in RECUP

Abstract-Scientific computing communities increasingly run their experiments using complex data- and compute-intensive workflows that utilize distributed and heterogeneous architectures targeting numerical simulations and machine learning, often executed on the Department of Energy Leadership Computing Facilities (LCFs). We argue that a principled, systematic approach to implementing FAIR principles at scale, including fine-grained metadata extraction and organization, can help with the numerous challenges to performance reproducibility posed by such workflows. We extract workflow patterns, propose a set of tools to manage the entire life cycle of performance metadata, and aggregate them in an HPC-ready framework for reproducibility (RECUP). We describe the challenges in making these tools interoperable, preliminary work, and lessons learned from this experiment.

97 MATHEMATICS AND COMPUTING↗

Three-dimensional dendritic needle network model for alloy solidification

Here, we present a three-dimensional (3D) formulation of the multiscale Dendritic Needle Network (DNN) model for dendritic microstructure growth. This approach is aimed at simulating quantitatively the solidification dynamics of complex hierarchical networks in spatially extended dendritic arrays, hence bridging the scale gap between phase-field simulations at the scale of a few dendrites and coarse-grained simulations on the larger scale of entire polycrystalline structures. In the DNN model, the dendritic network is represented by a network of branches that interact through the solutal diffusion field. The tip velocity V(t) and tip radius ρ(t) of each needle is determined by combining a standard solvability condition that fixes the product ρ 2 V and a solute flux conservation condition that fixes the product ρV 2 in 2D and ρV in 3D as a function of a solutal flux intensity factor ℱ(t). The latter measures the intensity of the solute flux in the dendrite tip region and can be calculated by contour (2D) or surface (3D) integration around the tip of each needle. We first present an extended formulation of the 2D DNN model where needles have a finite thickness and parabolic tips. This formulation remains valid for a larger range of tip Péclet number than the original thin needle formulation and is readily extended to 3D needles with paraboloidal tips. The 3D DNN model based on this thick-needle formulation is developed for both isothermal and directional solidification. Model predictions are validated by comparisons with known analytical solutions that describe the early transient and steady-state growth regimes. We exploit the power of the DNN model to characterize the competitive growth of well-developed secondary branches in 3D on the scale of the diffusion length. The results show that the length of active secondary branches increases as a power law of distance behind the tip with an exponent in good quantitative agreement with experimental measurements. Finally, we apply the model to simulate the three-dimensional directional solidification of an Al-7wt% Si alloy, which we directly compare to observed microstructures from microgravity experiments onboard the International Space Station. The predictions of selected microstructural features, such as dendrite arm spacings, show a good agreement with experiments. The computationally-efficient DNN model opens new avenues for investigating the dynamics of large dendritic arrays at length and time scales relevant to solidification experiments and processes.

36 MATERIALS SCIENCE↗

BigPanDA monitoring system evolution in the ATLAS Experiment

Monitoring services play a crucial role in the day-to-day operation of distributed computing systems. The ATLAS Experiment at LHC uses the Production and Distributed Analysis workload management system (PanDA WMS), which allows a million computational jobs to run daily at over 170 computing centers of the WLCG and opportunistic resources, utilizing 600k cores simultaneously on average. The BigPanDA monitor is an essential part of the monitoring infrastructure for the ATLAS Experiment that provides a wide range of views, from top-level summaries to a single computational job and its logs. Over the past few years of the PanDA WMS advancement in the ATLAS Experiment, several new components were developed, such as Harvester, iDDS, Data Carousel, and Global Shares. Due to its modular architecture, the BigPanDA monitor naturally grew into a platform where the relevant data from all PanDA WMS components and accompanying services are accumulated and displayed in the form of interactive charts and tables. Moreover the system has been adopted by other experiments beyond HEP. In this paper we describe the evolution of the BigPanDA monitor system, the development of new modules, and the integration process into other experiments.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Investigating User Experiences with Data Abstractions on High Performance Computing Systems

Scientific exploration generates expanding volumes of data that commonly require High Performance Computing (HPC) systems to facilitate research. HPC systems are complex ecosystems of hardware and software that frequently are not user friendly. The Usable Data Abstractions (UDA) project set out to build usable software for scientific workflows in HPC environments by undertaking multiple rounds of qualitative user research. Qualitative research investigates how individuals accomplish their work and our interview-based study surfaced a variety of insights about the experiences of working in and with HPC ecosystems. This report examines multiple facets to the experiences of scientists and developers using and supporting HPC systems. We discuss how stakeholders grasp the design and configuration of these systems, the impacts of abstraction layers on their ability to successfully do work, and the varied perceptions of time that shape this work. Examining the adoption of the Cori HPC at NERSC we explore the anticipations and lived experiences of users interacting with this system’s novel storage feature, the Burst Buffer. We present lessons learned from across these insights to illustrate just some of the challenges HPC facilities and their stakeholders need to account for when procuring and supporting these essential scientific resources to ensure their usability and utility to a variety of scientific practices.

97 MATHEMATICS AND COMPUTING↗

Shock compression of fused silica: An impedance matching standard

The properties of silica (SiO 2 ) at extreme conditions have important applications for planetary processes and for high pressure research. Here, we report the results of 125 plate impact shock compression experiments on fused silica spanning 200–1100 GPa using the Z machine at Sandia National Laboratories. Additionally, we present a complementary set of density functional theory based molecular dynamics calculations based on an amorphous reference state that extend the Hugoniot to 2500 GPa. We find good agreement between the Z data, extant laser driven shock compression experiment data, and computational results over most of the pressure range. With these results, fused silica can be used as a new impedance matching standard for shock compression experiments.

54 ENVIRONMENTAL SCIENCES↗

Accelerated modulus-based matrix splitting iteration method for a class of nonlinear complementarity problems

In this paper, we reformulate a class of nonlinear complementarity problems as the implicit fixed-point equations. We demonstrate accelerated modulus-based matrix splitting iteration method. We show their convergence by assuming that the system matrix is positive definite or the splitting of the system matrix are H{sub +}-compatible splitting and discuss the choice of the optimal parameter. Furthermore, we give two-step accelerated modulus-based matrix splitting iteration method, which may achieve higher computing efficiency. Numerical experiments are presented to show the effectiveness of the method.

97 MATHEMATICS AND COMPUTING↗

Optical vortex manipulation for topological quantum computation

Topological quantum computation based on Majorana bound states may enable new paths to fault-tolerant quantum computing. Several recent experiments have suggested that the vortex cores of topological superconductors, such as iron-based superconductors, may host Majorana bound states at zero energy. However, quantum computation with these zero-energy vortex bound states requires precise and fast manipulation of individual vortices, which is difficult to do in a scalable manner. To address this issue, in this study we propose a control scheme based on local heating via, for example, scanning optical microscopy to braid vortex-bound Majorana zero modes in a two-dimensional topological superconductor. First, we derive the conditions required for transporting a single vortex between two defects in the superconducting material by trapping it with a hot spot generated by local optical heating. Equipped with critical conditions for the vortex motion, we then establish the ideal material properties for vortex braiding and describe how transition errors resulting from finite speed and/or temperature can be minimized. Our work paves the way toward optical or microscopic control of zero-energy vortex bound states in two-dimensional topological superconductors.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Dual-Purpose Canister Filling Demonstration Project Progress Report

This report discusses the progress made at the Oak Ridge National Laboratory to support direct disposal of dual-purpose canisters (DPCs). Acceptable filler materials should demonstrate that the probability of criticality in DPCs during the disposal timeframe is below the probability threshold for inclusion in a repository performance assessment. This effort, which will ultimately result in a full-scale demonstration, includes computational fluid dynamics (CFD) modelling developed to gauge the filling process and to uncover any unforeseen issues. Filling simulations of the lower region (mouse holes) of a prototypic DPC show successfully simulate filling of the void space inside the canister and a smooth, even progression of the liquid level. Flow through a pipe that is similar to the drainpipe in a DPC is being investigated separately to gain valuable insight of the flow regime inside a pipe. Three physical experiments validating the computational filling model have been completed using surrogate liquids. One experiment using molten metal has been completed and the results demonstrate adequate filling of the canister void spaces. Although the scale experiment observed some void spaces related to shrinkage of the metal during cooling, the volume filled is expected to be sufficient to meet the purpose of moderator exclusion. Further experiments will scale up the geometry, moving towards a full-sized DPC demonstration, and provide a more rigorous investigation of candidate filler materials.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

DUNE Software and Computing Challenges

The DUNE experiment will begin running in the late 2020's. The goals of the experiment include 1) studying neutrino oscillations using a beam of neutrinos from Fermilab in Illinois to the Sanford Underground Research Facility, 2) studying astrophysical neutrino sources and rare processes and 3) understanding the physics of neutrino interactions in matter. The DUNE Far Detector, consisting of four 17 kt LArTPC modules, will produce "events" rang-ing in size from 6 GBs to more than 100 TBs, posing unique challenges for DUNE software and computing. The data processing algorithms, particularly for raw data, drive the requirements for the future DUNE software framework documented here.

97 MATHEMATICS AND COMPUTING↗

Uncovering Where Compensating Errors Could Hide in ENDF/B-VIII.0

Unconstrained physics spaces between two or more nuclear data observables in a library occur when their values can be simultaneously adjusted without violating the uncertainties in either differential information or simulations of relevant integral experiments. Differential data are often too imprecise to fully bound all nuclear data observables of interest for application simulations. Integral data are simulated with combinations of nuclear data so that an error in one observable may be hidden by a counterbalancing error in another. In this manner compensating errors may lurk within nuclear data libraries and these errors have the potential to undermine the predictive power of neutron transport simulations, particularly in situations where there is no conclusive validation experiment that resembles the application of interest. The EUCLID project (Experiments Underpinned by Computational Learning for Improvements in Nuclear Data) developed a preliminary workflow to identify these unconstrained physics spaces by bringing together results from a large collection of integral experiments with their simulated counter-parts as well as differential information that have a one-to-one correspondence to nuclear data. This wealth of information is processed by machine learning tools for subsequent refinement by human experts. Here, we show how the EUCLID work-flow is executed by applying it first to 239 Pu and then to 9 Be nuclear data in ENDF/B-VIII.0.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗