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At least 487 records · Page 27
All sourcesNASA NTRSDOE OSTI
DOE OSTI2021

The 2021 quantum materials roadmap

In recent years, the notion of ‘Quantum Materials’ has emerged as a powerful unifying concept across diverse fields of science and engineering, from condensed-matter and coldatom physics to materials science and quantum computing. Beyond traditional quantum materials such as unconventional superconductors, heavy fermions, and multiferroics, the field has significantly expanded to encompass topological quantum matter, two-dimensional materials and their van der Waals heterostructures, Moiré materials, Floquet time crystals, as well as materials and devices for quantum computation with Majorana fermions. In this Roadmap collection we aim to capture a snapshot of the most recent developments in the field, and to identify outstanding challenges and emerging opportunities. The format of the Roadmap, whereby experts in each discipline share their viewpoint and articulate their vision for quantum materials, reflects the dynamic and multifaceted nature of this research area, and is meant to encourage exchanges and discussions across traditional disciplinary boundaries. It is our hope that this collective vision will contribute to sparking new fascinating questions and activities at the intersection of materials science, condensed matter physics, device engineering, and quantum information, and to shaping a clearer landscape of quantum materials science as a new frontier of interdisciplinary scientific inquiry. We stress that this article is not meant to be a fully comprehensive review but rather an up-to-date snapshot of different areas of research on quantum materials with a minimal number of references focusing on the latest developments.

2D materials↗
DOE OSTI2021

OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies

Biological ontologies are used to organize, curate and interpret the vast quantities of data arising from biological experiments. While this works well when using a single ontology, integrating multiple ontologies can be problematic, as they are developed independently, which can lead to incompatibilities. The Open Biological and Biomedical Ontologies (OBO) Foundry was created to address this by facilitating the development, harmonization, application and sharing of ontologies, guided by a set of overarching principles. One challenge in reaching these goals was that the OBO principles were not originally encoded in a precise fashion, and interpretation was subjective. Here, we show how we have addressed this by formally encoding the OBO principles as operational rules and implementing a suite of automated validation checks and a dashboard for objectively evaluating each ontology’s compliance with each principle. This entailed a substantial effort to curate metadata across all ontologies and to coordinate with individual stakeholders. We have applied these checks across the full OBO suite of ontologies, revealing areas where individual ontologies require changes to conform to our principles. Our work demonstrates how a sizable, federated community can be organized and evaluated on objective criteria that help improve overall quality and interoperability, which is vital for the sustenance of the OBO project and towards the overall goals of making data Findable, Accessible, Interoperable, and Reusable (FAIR).

96 KNOWLEDGE MANAGEMENT AND PRESERVATION↗
DOE OSTI2020

The Human Phenotype Ontology in 2021

The Human Phenotype Ontology (HPO, https://hpo.jax.org) was launched in 2008 to provide a comprehensive logical standard to describe and computationally analyze phenotypic abnormalities found in human disease. The HPO is now a worldwide standard for phenotype exchange. The HPO has grown steadily since its inception due to considerable contributions from clinical experts and researchers from a diverse range of disciplines. Here, we present recent major extensions of the HPO for neurology, nephrology, immunology, pulmonology, newborn screening, and other areas. For example, the seizure subontology now reflects the International League Against Epilepsy (ILAE) guidelines and these enhancements have already shown clinical validity. We present new efforts to harmonize computational definitions of phenotypic abnormalities across the HPO and multiple phenotype ontologies used for animal models of disease. These efforts will benefit software such as Exomiser by improving the accuracy and scope of cross-species phenotype matching. The computational modeling strategy used by the HPO to define disease entities and phenotypic features and distinguish between them is explained in detail. We also report on recent efforts to translate the HPO into indigenous languages. Finally, we summarize recent advances in the use of HPO in electronic health record systems.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2020

RNAcentral 2021: secondary structure integration, improved sequence search and new member databases

RNAcentral is a comprehensive database of non-coding RNA (ncRNA) sequences that provides a single access point to 44 RNA resources and >18 million ncRNA sequences from a wide range of organisms and RNA types. RNAcentral now also includes secondary (2D) structure information for >13 million sequences, making RNAcentral the world’s largest RNA 2D structure database. The 2D diagrams are displayed using R2DT, a new 2D structure visualization method that uses consistent, reproducible and recognizable layouts for related RNAs. The sequence similarity search has been updated with a faster interface featuring facets for filtering search results by RNA type, organism, source database or any keyword. This sequence search tool is available as a reusable web component, and has been integrated into several RNAcentral member databases, including Rfam, miRBase and snoDB. To allow for a more fine-grained assignment of RNA types and subtypes, all RNAcentral sequences have been annotated with Sequence Ontology terms. The RNAcentral database continues to grow and provide a central data resource for the RNA community. RNAcentral is freely available at https://rnacentral.org.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2022

Optical and near-infrared photometric and polarimetric monitoring at flaring state of BL Lacertae in 2020–2021

Abstract BL Lacertae (BL Lac) was in an unprecedented bright state since 2020 August. We have conducted long-term photometric and polarimetric observations of BL Lac in optical and near-infrared (NIR) bands using the Kanata telescope in the Higashi-Hiroshima Observatory. BL Lac had simultaneously brightened in the NIR, optical, X-ray, and gamma-ray bands during the brightening period. There were two peaks of brightness in the optical and NIR bands. The degree of polarization and electric-vector position angle (EVPA) were also found to have fluctuated in the optical and NIR bands. A bluer-when-brighter trend was observed between the optical and NIR bands during the entire period of our observation. Furthermore, during the first bright period, the EVPA became parallel to the position angle of the jet. On the other hand, the polarization during the second brightening showed a different behavior from that during the first brightening. The brightenings can be explained by a combination of a shock acceleration in which a shock was generated with the perpendicular-direction shock front of the jet and a variation of the inclination angle.

Hazama, Natsuko↗
DOE OSTI2021

Philympics 2021: Prophage Predictions Perplex Programs

Most bacterial genomes contain integrated bacteriophages—prophages—in various states of decay. Many are active and able to excise from the genome and replicate, while others are cryptic prophages, remnants of their former selves. Over the last two decades, many computational tools have been developed to identify the prophage components of bacterial genomes, and it is a particularly active area for the application of machine learning approaches. However, progress is hindered and comparisons thwarted because there are no manually curated bacterial genomes that can be used to test new prophage prediction algorithms. Here, we present a library of gold-standard bacterial genome annotations that include manually curated prophage annotations, and a computational framework to compare the predictions from different algorithms. We use this suite to compare all extant stand-alone prophage prediction algorithms to identify their strengths and weaknesses. We provide a FAIR dataset for prophage identification, and demonstrate the accuracy, precision, recall, and f 1 score from the analysis of seven different algorithms for the prediction of prophages. We discuss caveats and concerns in this analysis and how those concerns may be mitigated.

Roach, Michael J.↗
DOE OSTI2023

Measurement of the B 0 lifetime and flavor-oscillation frequency using hadronic decays reconstructed in 2019–2021 Belle II data

We measure the B0 lifetime and flavor-oscillation frequency using B 0 → D(*) – π + decays collected by the Belle II experiment in asymmetric-energy e + ⁢e – collisions produced by the SuperKEKB collider operating at the Υ⁡(4⁢S) resonance. We fit the decay-time distribution of signal decays, where the initial flavor is determined by identifying the flavor of the other B meson in the event. The results, based on 33000 signal decays reconstructed in a data sample corresponding to 190 fb –1 , are τ B 0 = (1.499 ± 0.013 ± 0.008) ps, Δ⁢m d = (0.516 ± 0.008 ± 0.005) ps –1 , where the first uncertainties are statistical and the second are systematic. These results are consistent with the world-average values.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2025

Evaluating the Impact of Power Outages on Occupancy Patterns During the 2021 Texas Power Crisis

Large-scale power outages, such as those caused by extreme weather events, have a big impact on human behavior. A short power outage is merely a nuisance for most, and may not change people's locations. An outage that lasts for a few hours can result in spoiled food and medical supplies, and people will have to restock spoiled items. Long outages result in temperatures outside tolerable levels in homes, and may prompt people to acquire supplies, such as generators and gas, or change location. The long outages during Winter Storm Uri in Texas resulted in millions of dollars in property damage due to freezing pipes. This level of damage is expected to result in a sharp increase in supply runs and contractor activity. In this paper, we present a tool to explore differences in visiting patterns before, during, and after power outages. It allows to compare different points of interest like medical facilities, grocery stores, hardware stores, and other types of businesses.

big data↗
DOE OSTI2021

New physics in rare B decays after Moriond 2021

Abstract The anomalies in rare B decays endure. We present results of an updated global analysis that takes into account the latest experimental input – in particular the recent results on $$R_K$$ R K and BR $$(B_s \rightarrow \mu ^+\mu ^-)$$ ( B s → μ + μ - ) – and that qualitatively improves the treatment of theory uncertainties. Fit results are presented for the Wilson coefficients of four-fermion contact interactions. We find that muon specific Wilson coefficients $$C_9 \simeq -0.73$$ C 9 ≃ - 0.73 or $$C_9 = -C_{10} \simeq -0.39$$ C 9 = - C 10 ≃ - 0.39 continue to give an excellent description of the data. If only theoretically clean observables are considered, muon specific $$C_{10} \simeq 0.60$$ C 10 ≃ 0.60 or $$C_9=-C_{10} \simeq -0.35$$ C 9 = - C 10 ≃ - 0.35 improve over the Standard Model by $$\sqrt{\Delta \chi ^2} \simeq 4.7\sigma $$ Δ χ 2 ≃ 4.7 σ and $$\sqrt{\Delta \chi ^2} \simeq 4.6\sigma $$ Δ χ 2 ≃ 4.6 σ , respectively. In various new physics scenarios we provide predictions for lepton flavor universality observables and CP asymmetries that can be tested with more data. We update our previous combination of ATLAS, CMS, and LHCb data on BR $$(B_s \rightarrow \mu ^+\mu ^-)$$ ( B s → μ + μ - ) and BR $$(B^0\rightarrow \mu ^+\mu ^-)$$ ( B 0 → μ + μ - ) taking into account the full two-dimensional non-Gaussian experimental likelihoods.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2022

FLAG Review 2021

Abstract We review lattice results related to pion, kaon, D -meson, B -meson, and nucleon physics with the aim of making them easily accessible to the nuclear and particle physics communities. More specifically, we report on the determination of the light-quark masses, the form factor $$f_+(0)$$ f + ( 0 ) arising in the semileptonic $$K \rightarrow \pi $$ K → π transition at zero momentum transfer, as well as the decay constant ratio $$f_K/f_\pi $$ f K / f π and its consequences for the CKM matrix elements $$V_{us}$$ V us and $$V_{ud}$$ V ud . Furthermore, we describe the results obtained on the lattice for some of the low-energy constants of $$SU(2)_L\times SU(2)_R$$ S U ( 2 ) L × S U ( 2 ) R and $$SU(3)_L\times SU(3)_R$$ S U ( 3 ) L × S U ( 3 ) R Chiral Perturbation Theory. We review the determination of the $$B_K$$ B K parameter of neutral kaon mixing as well as the additional four B parameters that arise in theories of physics beyond the Standard Model. For the heavy-quark sector, we provide results for $$m_c$$ m c and $$m_b$$ m b as well as those for the decay constants, form factors, and mixing parameters of charmed and bottom mesons and baryons. These are the heavy-quark quantities most relevant for the determination of CKM matrix elements and the global CKM unitarity-triangle fit. We review the status of lattice determinations of the strong coupling constant $$\alpha _s$$ α s . We consider nucleon matrix elements, and review the determinations of the axial, scalar and tensor bilinears, both isovector and flavor diagonal. Finally, in this review we have added a new section reviewing determinations of scale-setting quantities.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2022

Theory, phenomenology, and experimental avenues for dark showers: a Snowmass 2021 report

In this work, we consider the case of a strongly coupled dark/hidden sector, which extends the Standard Model (SM) by adding an additional non-Abelian gauge group. These extensions generally contain matter fields, much like the SM quarks, and gauge fields similar to the SM gluons. We focus on the exploration of such sectors where the dark particles are produced at the LHC through a portal and undergo rapid hadronization within the dark sector before decaying back, at least in part and potentially with sizeable lifetimes, to SM particles, giving a range of possibly spectacular signatures such as emerging or semi-visible jets. Other, non-QCD-like scenarios leading to soft unclustered energy patterns or glueballs are also discussed. After a review of the theory, existing benchmarks and constraints, this work addresses how to build consistent benchmarks from the underlying physical parameters and present new developments for the PYTHIA Hidden Valley module, along with jet substructure studies. Finally, a series of improved search strategies is presented in order to pave the way for a better exploration of the dark showers at the LHC.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2021

Turbo FRMAC 2021 v.11.0.0

The Turbo FRMAC analysis tool performs complex calculations to quickly evaluate radiological hazards during an emergency response by assessing impacts to the public, workers, and the food supply. Turbo FRMAC can be used to evaluate the hazard from a wide variety of radiological incidents. Turbo FRMAC calculations are based on methods established by the Federal Radiological Monitoring and Assessment (FRMAC). Sandia National Laboratories is a multimission laboratory managed and operated by National Technology & Engineering Solutions of Sandia, LLC, a wholly owned subsidiary of Honeywell International Inc., for the U.S. Department of Energy’s National Nuclear Security Administration under contract DE-NA0003525. SAND2021-10713 O

Whitener, Dustin↗
DOE OSTI2021

DVRFS Microbiome 2021 Manuscript Code

These scripts document the code used to analyze the Death Valley Regional Flow System (DVRFS) microbial community for a manuscript titled "Subsurface Planktonic Microbial Communities Reflect Regional-Scale Groundwater Hydraulic Connectivity".

Merino, NancyS.↗
DOE OSTI2026

pre-postprocess elastic constants 2021

One scripts generates input and submission script files for third party DFT software VASP to compute elastic constants. The other script postprocesses the results from VASP.

Blaschke, Daniel↗
DOE OSTI2021

Greenhouse gases, Regulated Emissions, and Energy use in Technologies Model ® (2021 Excel)

To fully evaluate energy and emission impacts of advanced vehicle technologies and new transportation fuels, the fuel cycle from wells to wheels and the vehicle cycle through material recovery and vehicle disposal need to be considered. Sponsored by the U.S. Department of Energy's Office of Energy Efficiency and Renewable Energy (EERE), Argonne has developed a full life-cycle model called GREET (Greenhouse gases, Regulated Emissions, and Energy use in Technologies). It allows researchers and analysts to evaluate various vehicle and fuel combinations on a full fuel-cycle/vehicle-cycle basis. The first version of GREET was released in 1996. Since then, Argonne has continued to update and expand the model. GREET is developed as a multidimensional spreadsheet model in Microsoft Excel. It provides a comprehensive, life-cycle-based approach to compare the energy use and emissions of conventional and advanced vehicle technologies. It includes two sub-models named Fuel-Cycle Model (GREET 1, contains data on fuel cycles and vehicle operations) and Vehicle-Cycle Model (GREET 2, evaluates the energy and emission effects associated with vehicle material recovery and production, vehicle component fabrication, vehicle assembly, and vehicle disposal/recycling). This public domain model is available free of charge for anyone to use.

Wang, Michael↗