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At least 469 records · Page 26

DNA Viral Diversity, Abundance, and Functional Potential Vary across Grassland Soils with a Range of Historical Moisture Regimes

Soil viruses are abundant, but the influence of the environment and climate on soil viruses remains poorly understood. Here, we addressed this gap by comparing the diversity, abundance, lifestyle, and metabolic potential of DNA viruses in three grassland soils with historical differences in average annual precipitation, low in eastern Washington (WA), high in Iowa (IA), and intermediate in Kansas (KS). Bioinformatics analyses were applied to identify a total of 2,631 viral contigs, including 14 complete viral genomes from three deep metagenomes (1 terabase [Tb] each) that were sequenced from bulk soil DNA. An additional three replicate metagenomes (~0.5 Tb each) were obtained from each location for statistical comparisons. Identified viruses were primarily bacteriophages targeting dominant bacterial taxa. Both viral and host diversity were higher in soil with lower precipitation. Viral abundance was also significantly higher in the arid WA location than in IA and KS. More lysogenic markers and fewer clustered regularly interspaced short palindromic repeats (CRISPR) spacer hits were found in WA, reflecting more lysogeny in historically drier soil. More putative auxiliary metabolic genes (AMGs) were also detected in WA than in the historically wetter locations. The AMGs occurring in 18 pathways could potentially contribute to carbon metabolism and energy acquisition in their hosts. Structural equation modeling (SEM) suggested that historical precipitation influenced viral life cycle and selection of AMGs. The observed and predicted relationships between soil viruses and various biotic and abiotic variables have value for predicting viral responses to environmental change.

59 BASIC BIOLOGICAL SCIENCES↗

A TRIP TO THE CATACLYSMIC BINARY ZOO: DETAILED FOLLOW-UP OF 35 RECENTLY DISCOVERED SYSTEMS

We report follow-up studies of 35 recently discovered cataclysmic variables (CVs), 32 of which were found in large, automated synoptic sky surveys. The objects were selected for observational tractability. For 34 of the objects, we present mean spectra and spectroscopic orbital periods, and for one more we give an eclipse-based period. Thirty-two of the period determinations are new, and three of these refine published estimates based on superhump periods. The remaining three of our determinations confirm previously published periods. Twenty of the stars are confirmed or suspected dwarf novae with periods shorter than 3 hr, but we also find three apparent polars (AM Her stars) and six systems with P>5 hr. Five of these systems have secondary stars visible in their spectra, from which we estimate distances when possible. The orbital period distribution of this sample is very similar to that of previously discovered CVs.

79 ASTRONOMY AND ASTROPHYSICS↗

A high-throughput approach for statistical process optimization in Laser Powder Bed Fusion

Process variability is inherent in metal additive manufacturing (AM). However, it is often overlooked in process optimization frameworks, constraining the understanding of process uncertainties and their influence on parameter selection. To address this, we present an integrated framework that combines high-throughput single-track experiments, GAN-based melt pool geometry extraction, robust statistical and machine learning modeling, and uncertainty-quantified process mapping. Process variability is characterized through single-track melt pool behaviors, and its influence on defect formation is systematically quantified to enable statistically guided process parameter optimization. This approach is demonstrated on Laser Powder Bed Fusion (L-PBF) of stainless steel 316L, effectively capturing the interplay between process parameters, melt pool variability, and defect probability. By integrating uncertainty quantification into process optimization, this study provides a structured methodology for addressing variability challenges in AM quality control, ultimately contributing to enhanced manufacturing reliability.

Laser Powder Bed Fusion↗

Transmission-distribution long-term volt-var planning considering reactive power support capability of distributed PV

High penetration of grid-edge, inverter-based photovoltaic (PV) can cause significant voltage fluctuations not only at the distribution but also at the sub-transmission levels due to PV output intermittency. Traditional reactive power planning approaches do not consider intermittency, nor the possibility of coordinating the control of existing and future volt-ampere reactive resources. This paper proposes a reactive power planning tool for sub-transmission systems to mitigate voltage violations and fluctuations caused by high PV penetration and intermittency with a minimum investment cost. The planning tool coordinates with an optimization-based volt-var operational tool for: a) modeling the coordination of all existing var assets in both sub-transmission and distribution systems to reduce the need of new equipment, and b)selecting a set of scenarios with voltage violations, derived from PV intermittency c) testing the final investment decision. The tool obtains an investment need for each intermittency scenario with a proposed optimal power-flow framework with efficient techniques to handle a high number of discrete variables. Two options are provided for final planning decision: i) a conservative direct combination of investment need solutions and ii) a machine learning-based selection of representative investment needs at most time steps. The final investment decision options are verified using a realistic large-scale sub-transmission system and 5-minute PV and load data. The results show a significant voltage performance improvement with a lower investment cost for additional var equipment compared to conventional approaches.

14 SOLAR ENERGY↗

Inter-annual variability of net and gross ecosystem carbon fluxes: A review

As the lifetime of regional flux networks approach twenty years, there is a growing number of papers that have published long term records (5 years or more) of net carbon fluxes between ecosystems and the atmosphere. Unanswered questions from this body of work are: 1) how variable are carbon fluxes on a year to year basis?; 2) what are the biophysical factors that may cause interannual variability and/or temporal trends in carbon fluxes?; and 3) how does the biophysical control on this carbon flux variability differ by climate and ecological spaces? To address these questions, we surveyed published data from 59 sites that reported on five or more years of continuous measurements, yielding 544 site-years of data. We found that the standard deviation of the interannual variability in net ecosystem carbon exchange (162 gC m -2 y -1 ) is large relative to its population mean (-200 gC m -2 y -1 ). Broad-leaved evergreen forests and crops experienced the greatest absolute variability in interannual net carbon exchange (greater than ±300 gC m -2 y -1 ) and boreal evergreen forests and maritime wetlands were among the least variable (less than ±40 gC m -2 y -1 ). A disproportionate fraction of the yearly variability in net ecosystem exchange was associated with biophysical factors that modulated ecosystem photosynthesis rather than ecosystem respiration. Yet, there was appreciable and statistically significant covariance between ecosystem photosynthesis and respiration. Consequently, biophysical conditions that conspired to increase ecosystem photosynthesis to from one year to the next were associated with an increase in ecosystem respiration, and vice versa; on average, the year to year change in respiration was 40% as large as the year to year change in photosynthesis. The analysis also identified sets of ecosystems that are on the verge of switching from being carbon sinks to carbon sources. These include sites in the Arctic tundra, the evergreen forests in the Pacific northwest and some grasslands, where year to year changes in respiration are outpacing those in photosynthesis. While a select set of climatic and ecological factors (e.g. light, rainfall, temperature, phenology) played direct and indirect roles on this variability, their impact differed conditionally, as well as by climate and ecological spaces. For example, rainfall had both positive and negative effects. Deficient rainfall caused a physiological decline in photosynthesis in temperate and semi-arid regions. Too much rain, in the humid tropics, limited photosynthesis by limiting light. In peatlands and tundra, excess precipitation limited ecosystem respiration when it raised the water table to the surface. For deciduous forests, warmer temperatures lengthened the growing season, increasing photosynthesis, but this effect also increased soil respiration. Finally, statistical analysis was performed to evaluate the detection limit of trends; we computed the confidence intervals of trends in multi-year carbon fluxes that need to be resolved to conclude whether the differences are to be attributed to randomness or biophysical forcings. Ongoing studies and reports on interannual variations need to consider the role of the duration of the time series on random errors when quantifying potential trends and extreme events.

54 ENVIRONMENTAL SCIENCES↗

Teaching Freight Mode Choice Models New Tricks Using Interpretable Machine Learning Methods

Understanding and forecasting the intricate freight mode choice behavior under various industry, policy, and technology contexts is essential in freight planning and policymaking. Numerous models have been developed in prior studies to provide insights into freight mode selection, the majority of which use discrete choice models such as multinomial logit (MNL) models. However, logit models often rely on linear specifications of independent variables, despite potential nonlinear relationships in the data. Moreover, there often lacks a heuristic and efficient approach to identify such complex relationships to define the logit model specifications. To fill this gap, we developed an MNL model for freight mode choice using the insights from state-of-the- art machine learning (ML) models. ML models can capture the nonlinear nature of the complex decision-making process, and recent advances in 'explainable AI' have greatly improved their interpretability. The interpretable ML methods help enhance the performance of MNL models and advance knowledge of freight mode choice. Specifically, the influential factors and their relationship with individual modes are identified using SHapley Additive exPlanations (SHAP) to improve the MNL's performance. The workflow is demonstrated in a case study of Austin, Texas, and the SHAP results reveal multiple nonlinear relationships predicted by ML models. Incorporating those relationships into MNL model specifications improves the interpretability and accuracy of the MNL model compared to a conventional MNL model. Findings from this study can be used to guide freight planning and inform policymakers and practitioners on how key factors affect freight decision-making.

ADVANCED PROPULSION SYSTEMS,MATHEMATICS AND COMPUT↗

Weather Considerations for Ground-Based Optical Space Situational Awareness Site Selection

Continuous surveillance of the night sky with ground-based optical sensors requires a number of sites distributed around the globe. Due to variable cloud cover, the number of sites required to guarantee nightly observation of all Geosynchronous Earth Orbit slots is greater than that simply required to provide partial coverage. Combining this consideration with the requirements for dark sky sites and adequate supporting infrastructure presents additional limitations on where ground- based telescopes can be located. The authors examine this problem and present results of an optimization approach that can both recommend sites and networks of sites, as well as provide insight into the utility of any individual geographic location.

54 ENVIRONMENTAL SCIENCES↗

Swainson's hawk migration flight characteristics across a variable landscape

Swainson’s hawk migration can be best described in terms of conditions that support soaring flight, rather than any kind of habitat selection. These birds fly a relatively straight path to make their migration as short as possible, but are constrained by the landscape available to them between their breeding and wintering grounds.

54 ENVIRONMENTAL SCIENCES↗

An ultrahigh-resolution E3SM land model simulation framework and its first application to the Seward Peninsula in Alaska

The availability of supercomputers and state-of-science datasets has made it possible to conduct large-scale land simulations at an ultrahigh-resolution. This study reported a computational framework for land surface simulation using the E3SM land model (ELM) at an unprecedented resolution (1 km x 1 km gridcell). The ultrahigh-resolution ELM (uELM) simulation framework includes three parts: (1) high-resolution atmospheric forcing and surface properties dataset generation, (2) massive gridcell-based simulation, and (3) large-scale simulation results analysis. Additionally, we implemented the uELM simulation framework and completed the first 1 km x 1 km terrestrial ecosystem simulation (from 1850 to 2014) over the Seward Peninsula in Alaska (78,000 km 2 ). The experiment contained two phases: a spin-up simulation and a transient simulation, and required five weeks of calculations using 320 cores in a 44-node Linux HPC computer. It created approximately 1.3 TB of data from the transient simulation alone (1850 - present). We selected sample results (monthly and daily simulation outputs) to illustrate the temporal and spatial variations of several variables in high-latitude Arctic ecosystems’ water, energy, and carbon cycles. At last, we summarized the lessons learned and proposed new developments for full-scale uELM simulations over the entire North American continent (approximately 22,000,000 km 2 ).

54 ENVIRONMENTAL SCIENCES↗

Plasma-Enhanced Atomic Layer Deposition of TiAlN: Compositional and Optoelectronic Tunability

Titanium nitride (TiN) is a unique refractory plasmonic material, the nanocomposites and alloys of which provide further opportunities to tailor its optical and photonic properties. We prepare TiAlN films of continuously variable compositions through the systematic variation of TiN versus AlN cycle ratio in plasma-enhanced atomic layer deposition (PEALD) and investigate the resulting thin-film composition, crystallinity, and optical properties. The resulting properties of TiAIN films are not simple linear combinations of the TiN and AlN films, which exhibit distinct metallic and dielectric properties, but instead are dramatically influenced by the local chemical environment of neighboring constituents. In situ spectroscopic ellipsometry further enables measurement of the varying optical properties of TiAlN films, which evolve over 10 s of nm of film thickness. The tunable optoelectronic properties of TiAlN films enable durable coatings of variable electrical resistance as well as high-temperature diffusion barriers and optical coatings with application to selective solar absorbers and emitters.

36 MATERIALS SCIENCE↗

Interlaboratory Study for Characterizing Monoclonal Antibodies by Top-Down and Middle-Down Mass Spectrometry

The Consortium for Top-Down Proteomics (www.topdownproteomics.org) launched the present study to assess the state of top-down mass spectrometry (TD MS) and middle-down mass spectrometry (MD MS) for characterizing monoclonal antibody (mAb) primary structures, including their modifications. To meet the needs of the rapidly growing therapeutic antibody market, it is important to develop analytical strategies to characterize the heterogeneity of a therapeutic product’s primary structure reliably and reproducibly. The major objective of the present study was to determine whether current TD/MD MS technologies and protocols can add value to the more commonly employed bottom-up approaches, such as confirming protein integrity, sequencing variable domains, ruling out artefacts, and revealing modifications and their locations. A panel of three mAbs was selected and centrally provided to twenty laboratories worldwide for the analysis: Sigma mAb standard (SiLuLite), NIST mAb standard, and the therapeutic mAb Herceptin (trastuzumab). A variety of different MS instrument platforms and ion dissociation techniques were employed. Overall, the present study confirms that MD/TD MS strategies are valuable and readily available tools in laboratories worldwide. They provide complementary information to the bottom-up approach and can add unique information, which may be crucial for comprehensive mAb characterization. The current limitations, as well as possible solutions to overcome them, are also outlined. One of the limitations revealed by the results of the present study is that the expert knowledge in both experiment and data analysis is indispensable to practice TD/MD MS, but the number of TD/MD MS experts is still very low.

59 BASIC BIOLOGICAL SCIENCES↗

In-Field Whole-Plant Maize Architecture Characterized by Subcanopy Rovers and Latent Space Phenotyping

Core Ideas * Subcanopy rovers enabled 3D characterization of thousands of hybrid maize plots. * Machine learning produces heritable latent traits that describe plant architecture. * Rover-based phenotyping is far more efficient than manual phenotyping. * Latent phenotypes from rovers are ready for application to plant biology and breeding. Collecting useful, interpretable, and biologically relevant phenotypes in a resource-efficient manner is a bottleneck to plant breeding, genetic mapping, and genomic prediction. Autonomous and affordable subcanopy rovers are an efficient and scalable way to generate sensor-based datasets of in-field crop plants. Rovers equipped with lidar can produce three-dimensional reconstructions of entire hybrid maize (Zea mays L.) fields. In this study, we collected 2103 lidar scans of hybrid maize field plots and extracted phenotypic data from them by latent space phenotyping. We performed latent space phenotyping by two methods, principal component analysis and a convolutional autoencoder, to extract meaningful, quantitative latent space phenotypes (LSPs) describing whole-plant architecture and biomass distribution. The LSPs had heritabilities of up to 0.44, similar to some manually measured traits, indicating that they can be selected on or genetically mapped. Manually measured traits can be successfully predicted by using LSPs as explanatory variables in partial least squares regression, indicating that the LSPs contain biologically relevant information about plant architecture. These techniques can be used to assess crop architecture at a reduced cost and in an automated fashion for breeding, research, or extension purposes, as well as to create or inform crop growth models.

59 BASIC BIOLOGICAL SCIENCES↗

Surrogate Model of Flexible Research Platform EnergyPlus Models to Enable Sensitivity Analysis

This letter report describes the surrogate models developed from the EnergyPlus model of Oak Ridge National Laboratory’s Flexible Research Platform. Two data-driven black-box models were developed, and the outputs of the surrogate models were compared with the EnergyPlus model. The two models developed are a multilayer perceptron deep learning model, and a long short-term memory (LSTM) neural network model. The three factors for selecting the black-box models are scalability, computation time, and accuracy. A total of 107 input variables were the dominant variables in determining the outputs of building energy consumptions and thermal comfort. A total of 54 output variables were identified as the prediction targets, including the system- and zone-level outputs. The large set of the simulation cases were generated by integrating sensor errors into an emulator based on EnergyPlus and Python EMS, which includes advanced control sequences from ASHRAE Guideline 36-2018: High-Performance Sequences of Operation. The surrogate models were developed based on a set of large-scale simulation runs (i.e., 4,000 runs) on a cloud platform. The comparison analysis shows that the two black-box models had good accuracy for predicting new outputs for sensitivity analysis using the root mean square error metric. As a next step, the developed surrogate models will be used to perform sensitivity analysis for different sensor impacts (e.g., sensor types, sensor locations).

42 ENGINEERING↗

Building Energy Analysis of Manufactured and Multifamily Housing Types in Juneau, Alaska

This report details the results of building energy modeling analysis evaluating the potential energy savings, economic outcomes, and grid-level electricity reduction associated with cold climate air source heat pump (ccASHP) adoption across multifamily and manufactured housing (MMFH) building typologies in the City and Borough of Juneau (CBJ). Three building archetypes were evaluated: multifamily 4-plex apartments, multifamily 8-plex apartments, and manufactured housing units. Building energy models were developed using OpenStudio-HPXML and calibrated to actual utility consumption data and local meteorological data from the Juneau International Airport weather station using an automated calibration tool following the BPI-2400-S-2015 v.2 standard for model calibration. Occupant behaviors present the greatest variability in successful calibrations. Calibrated models were benchmarked against a baseline electric resistance heating condition, with the selected ccASHP modeled as the retrofit condition and typical meteorological year weather data for all results generation.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

Impala: A Flexible Adaptive Sampling Algorithm for Active Learning

The Implicit Potential Active Learning Algorithm, or impala, is a novel approach to adaptive sampling that allows for the blending of multiple independent query strategies into a common batch active learning framework. This methodology is agnostic to both the underlying learning model and the employed query strategies. In essence, impala treats query strategies as potential functions, which are combined into a probability of candidate selection. The end result is a flexible algorithm that can dynamically balance exploration and exploitation whose inherent variability guards against over-zealous greedy searching.

97 MATHEMATICS AND COMPUTING↗

High Statistics Measurements of $ν_μ$ Charged-Current Single $π^{+}$ Production with Zero Pion Kinetic Energy Threshold in MINERvA

This Letter presents measurements of single-differential cross sections of $ν_μ$-induced charged-current 1 $π^{+}$ production on scintillator using the MINERvA detector at Fermilab. These measurements use traditional track-based pion reconstruction as well as pions identified solely via Michel electron decays, allowing measurement of kinetic energies from 0 to 350 MeV. In total, 91,843 events were selected with $W_{exp}$$<$ 1.4 GeV/c. Differential cross sections as a function of pion and muon kinematic variables are presented and compared with the predictions of several neutrino event generators. Overall, modern pion production models tend to agree with data at the ends of the kinematic regions probed, but are discrepant with the main regions of the phase space probed by up to 15% in muon observables and up to 20% in pion observables. No model describes any of the variables well, and this result highlights model areas that require improvement for the next generation of neutrino oscillation experiments.

Granados, E. [Guanajuato U.]↗