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At least 469 records · Page 26

Discovery of Marburg virus neutralizing antibodies from virus-naïve human antibody repertoires using large-scale structural predictions

Marburg virus (MARV) disease is lethal, with fatality rates up to 90%. Neutralizing antibodies (Abs) are promising drug candidates to prevent or treat the disease. Current efforts are focused in part on vaccine development to induce such MARV-neutralizing Abs. We analyzed the antibody repertoire from healthy unexposed and previously MARV-infected individuals to assess if naïve repertoires contain suitable precursor antibodies that could become neutralizing with a limited set of somatic mutations. Here, we computationally searched the human Ab variable gene repertoire for predicted structural homologs of the neutralizing Ab MR78 that is specific to the receptor binding site (RBS) of MARV glycoprotein (GP). Eight Ab heavy-chain complementarity determining region 3 (HCDR3) loops from MARV-naïve individuals and one from a previously MARV-infected individual were selected for testing as HCDR3 loop chimeras on the MR78 Ab framework. Three of these chimerized antibodies bound to MARV GP. We then tested a full-length native Ab heavy chain encoding the same 17-residue-long HCDR3 loop that bound to the MARV GP the best among the chimeric Abs tested. Despite only 57% amino acid sequence identity, the Ab from a MARV-naïve donor recognized MARV GP and possessed neutralizing activity against the virus. Crystallization of both chimeric and full-length native heavy chain-containing Abs provided structural insights into the mechanism of binding for these types of Abs. Our work suggests that the MARV GP RBS is a promising candidate for epitope-focused vaccine design to induce neutralizing Abs against MARV.

59 BASIC BIOLOGICAL SCIENCES↗

Interval prediction in structural dynamic analysis

Methods for assessing the predictive accuracy of structural dynamic models are examined with attention given to the effects of modal mass, stiffness, and damping uncertainties. The methods are based on a nondeterministic analysis called 'interval prediction' in which interval variables are used to describe parameters and responses that are unknown. Statistical databases for generic modeling uncertainties are derived from experimental data and incorporated analytically to evaluate responses. Covariance matrices of modal mass, stiffness, and damping parameters are propagated numerically in models of large space structures by means of three methods. The test data tend to fall within the predicted intervals of uncertainty determined by the statistical databases. The present findings demonstrate the suitability of using data from previously analyzed and tested space structures for assessing the predictive accuracy of an analytical model.

Hasselman, Timothy K.↗

Evaluation of the Near-Surface Variables in the HRRR Weather Model Using Observations from the ARM SGP Site

Abstract The performance of version 4 of the NOAA High-Resolution Rapid Refresh (HRRR) numerical weather prediction model for near-surface variables, including wind, humidity, temperature, surface latent and sensible fluxes, and longwave and shortwave radiative fluxes, is examined over the Atmospheric Radiation Measurement (ARM) Southern Great Plains (SGP) region. The study evaluated the model’s bias and bias-corrected mean absolute error relative to the observations on different time scales. Forecasts of near-surface geophysical variables at five SGP sites (HRRR at 3-km scale) were found to agree well with observations, but some consistent observation–forecast differences also occurred. Sensible and latent heat fluxes are the most challenging variables to be reproduced. The diurnal cycle is the main temporal scale affecting observation–forecast differences of the near-surface variables, and almost all of the variables showed different biases throughout the diurnal cycle. Results show that the overestimation of downward shortwave and the underestimation of downward longwave radiative flux are the two major biases found in this study. The timing and magnitude of downward longwave flux, wind speed, and sensible and latent heat fluxes are also different with contributions from model representations, data assimilation limitations, and differences in scales between HRRR and SGP sites. The positive bias in downward shortwave and negative bias in longwave radiation suggests that the model is underestimating cloud fraction in the study domain. The study concludes by showing a brief comparison with version 3 of the HRRR and shows that version 4 has better performance in almost all near-surface variables. Significance Statement A correct representation of the near-surface variables is important for numerical weather prediction models. This study investigates the capability of the latest NOAA High-Resolution Rapid Refresh (HRRRv4) model in simulating the near-surface variables by comparing against the Atmospheric Radiation Measurement (ARM) Southern Great Plains (SGP) in situ observations. Among others, we find that the surface heat fluxes, such as sensible and latent heat fluxes, are the most difficult variables to be reproduced. This study also shows that the diurnal cycle has the dominant impact on the model’s performance, which means the majority of the outputted near-surface variables have the strong diurnal cycle in their bias errors.

54 ENVIRONMENTAL SCIENCES↗

Forecasting Remote Atmospheric Responses to Decadal Kuroshio Stability Transitions

Based on observational estimates and global ocean eddy-resolving coupled retrospective initialized predictions, we show that Kuroshio Extension variability affects rainfall variability along the west coast of North America. We show that the teleconnection between the current undulations and downstream rainfall can lead to improved subseasonal to seasonal predictions of precipitation over California, and we demonstrate that capturing these teleconnections requires coupled systems with sufficient ocean resolution (i.e., eddy-resolving), especially over time scales longer than one season. The improved forecast skill is diagnosed in terms of 35 years of retrospective initialized ensemble forecasts with an ocean eddy-resolving and an ocean eddy-parameterized coupled model. Not only does the ocean eddy-resolving model show sensitivity to Kuroshio Extension variability in terms of western North America precipitation, but the ocean eddy-resolving forecasts also show improved forecast skill compared to the ocean eddy-parameterized model. Additionally, the ocean eddy-parameterized coupled model shows no sensitivity to Kuroshio Extension variability. We also find near-decadal variability associated with a progression of a lower-tropospheric height dipole around the North Pacific and how these height anomalies lead to wind-driven Rossby waves that affect the eddy activity in the Kuroshio Extension with a time lag on the order of four years. This decadal-scale variability (~10 years) opens the possibility of multiyear predictability of western North American rainfall.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Nonlinear multiobjective and dynamic real-time predictive optimization for optimal operation of baseload power plants under variable renewable energy

Considering the increase of disruptive variable renewable energy penetration into the power grid, this article focuses on the investigation of a multiobjective and dynamic real-time optimization framework to address the cycling of large-scale power plants under renewable penetration. In this framework, a parallelized particle swarm optimization step is first performed to generate feasible initial points. Then, a multiobjective and dynamic real-time optimization formulation generates optimal trajectories. Further, the benefit of predictive capability is investigated for the dynamic component, which introduces the novel nonlinear multiobjective and dynamic real-time predictive optimization approach. Two multiobjective formulations to obtain Pareto front optimal in real time are explored: the modified Tchebycheff-based weighted metric and ϵ-constraint methods. Economic and environmental objectives are considered in this study. A novel topical discussion on the intersection of dynamic real-time optimization with model predictive control is also presented. The developed framework is successfully applied to a baseload coal-fired power plant with postcombustion CO 2 capture. Results indicate that the approach can be deployed for a large-scale system if automatic differentiation, model reduction, and parallelization are adopted to improve computational tractability, with computational improvement up to 120-folds after performing these steps. Finally, market and carbon policies showed an impact on the optimal compromise between the objectives with an additional 63 ton of CO 2 captured under favorable market conditions.

24 POWER TRANSMISSION AND DISTRIBUTION↗

High-pressure liquid-monopropellant strand combustion.

Examination of the influence of dissolved gases on the state of the liquid surface during high-pressure liquid-monopropellant combustion through the use of a strand burning experiment. Liquid surface temperatures were measured, using fine-wire thermocouples, during the strand combustion of ethyl nitrate, normal propyl nitrate, and propylene glycol dinitrate at pressures up to 81 atm. These measurements were compared with the predictions of a variable-property gas-phase analysis assuming an infinite activation energy for the decomposition reaction. The state of the liquid surface was estimated using a conventional low-pressure phase equilibrium model, as well as a high-pressure version that considered the presence of dissolved combustion-product gases in the liquid phase. The high-pressure model was found to give a superior prediction of measured liquid surface temperatures. Computed total pressures required for the surface to reach its critical mixing point during strand combustion were found to be in the range from 2.15 to 4.62 times the critical pressure of the pure propellant. Computed dissolved gas concentrations at the liquid surface were in the range from 35 to 50% near the critical combustion condition.

Faeth, G. M.↗

Effect of data assimilation in the Polar WRF with 3DVAR on the prediction of radiation, heat flux, cloud, and near surface atmospheric variables over Svalbard

Although the Polar Weather Research and Forecasting (PWRF) model has been developed for polar environments, simulations of atmospheric states in the polar region still have large uncertainties. Therefore, the effects of data assimilation (DA) to improve forecasts in the polar region were investigated for September 2017 using PWRF and the three-dimensional variational (3DVAR) DA method. The experiments without DA and those with DA assimilating only conventional observations and both conventional observations and satellite radiance data were performed. The forecasts from all experiments both without and with DA underestimated (overestimated) the downward longwave (shortwave) radiation flux due to the underestimation of the amount of Arctic clouds. When satellite radiance data (i.e., the Advanced Microwave Sounding Unit-A (AMSU-A) and Microwave Humidity Sounder (MHS)) were assimilated in addition to conventional observations in the PWRF, the distribution and amount of water vapor became closer to observations, which improves cloud liquid water forecasts. Therefore, when both conventional observations and radiance data were assimilated, the 25–30 h forecast errors of the downward longwave and shortwave radiation fluxes and sensible and latent heat fluxes decreased by 12.7%, 8.1%, 3.2%, and 7.8% with the WSM5 scheme and by 17.1%, 4.7%, 2.5%, and 3.1% with the 2-moment Morrison scheme, respectively, compared to those in the experiments without DA. The forecast errors of the 10 m wind and 2 m temperature with DA were smaller than those without DA at most observation stations. Therefore, the uncertainties of the Arctic forecasts in the PWRF decreased when using DA. To further improve Arctic forecasts, the assimilation of various additional satellite data is necessary.

54 ENVIRONMENTAL SCIENCES↗

Nickel cadmium battery performance modelling

The development of a model to predict cell/battery behavior given databases of temperature is described. The model accommodates batteries of various structural as well as thermal designs. Cell internal design modifications can be accommodated as long as the databases reflect the cell's performance characteristics. Operational parameters can be varied to simulate any number of charge or discharge methods under any orbital regime. The flexibility of the model stems from the broad scope of input variables and allows the prediction of battery performance under simulated mission or test conditions.

Clark, K.↗

Quantifying Contributions of Land Carbon Fluxes Variability and Atmospheric Transport Variability to Atmospheric CO2 Variability

Much of the uncertainty in predicting variations in greenhouse gases originates in the complex dynamics of the land ecosystem and the atmosphere. To reduce the uncertainties, it is useful to decouple the contributions of land carbon fluxes and atmospheric transport to atmospheric carbon variability. Here we isolate these contributions using a version of the NASA GEOS model that couples carbon, energy and water cycles between the land and the atmosphere. Our current study is a follow-on to a preliminary analysis that suggested that an extreme event (e.g., imposed drought) in a free running AGCM simulation affects atmospheric CO2 more through its impact on atmospheric transport than through a modification of land carbon fluxes. In order to more carefully isolate the effects of the land carbon variability and atmospheric transport variability on atmospheric CO2 variability, we conducted two coupled-AGCM simulations in replay mode, a mode that forces the model's evolution of weather to match that of the MERRA-2 reanalysis. In the control simulation, the land carbon fluxes and the atmospheric CO2 concentrations, as well as the meteorology, are simulated over 2001-2015. We compute the climatological seasonal cycles of net land carbon production from this control simulation and then prescribe, in a second simulation, these climatological carbon fluxes to the atmosphere in the same replay mode. By comparing the atmospheric CO2 variability produced in the two simulations, we fully isolate the part of this variability associated with land surface fluxes. Relative contributions of land flux variability and atmospheric transport variability to CO2 variability are quantified both on a regional basis and as a function of height into the atmosphere to support interpretation of both ground-based and satellite observations.

Lee, Eunjee↗

Temporal sequence transformer to advance long-term streamflow prediction

Accurate streamflow prediction is crucial for understanding climate change impacts on water resources and for effective management of extreme hydrological events. While Long Short-Term Memory (LSTM) networks have been the dominant data-driven approach for streamflow forecasting, recent advancements in transformer architectures for time series tasks have shown promise in outperforming traditional LSTM models. This study introduces a transformer-based model that integrates historical streamflow data with climatic variables to enhance streamflow prediction accuracy. We evaluated our transformer model against a benchmark LSTM across five diverse basins in the United States. Results demonstrate that the transformer architecture consistently outperforms the LSTM model across all evaluation metrics, highlighting its potential as a more effective tool for hydrological forecasting. This research contributes to the ongoing development of advanced AI techniques for improved water resource management and climate change adaptation strategies.

Singh, Ruhaan [Farragut High School]↗

Prediction of fatigue-crack growth in a high-strength aluminum alloy under variable-amplitude loading

The present paper is concerned with the application of an analytical crack-closure model to study crack growth under various load histories. The model was based on a concept like the Dugdale model, but modified to leave plastically deformed material in the wake of the advancing crack tip. The thickness effect was accounted for by using a 'constraint' factor on tensile yielding at the crack tip. The model was used to correlate crack-growth rates under constant-amplitude loading, and to predict crack growth under variable-amplitude loading on a high-strength aluminum alloy (7475-T7351) sheet material. The experimental data was obtained from Zhang et al. Predicted crack-growth lives agreed well with experimental data. For ten crack-growth tests subjected to various variable-amplitude load histories, the ratio of predicted-to-experimental lives ranged from 0.54 to 1.19. The mean value of predicted-to-experimental lives was 0.95 with a standard error of 0.2 for a constraint factor of 1.9.

Newman, J. C., Jr.↗

Short‐Term Hourly Weather Forecasting Using PredRNN With Image Preprocessing

Global weather forecast models are vital tools with numerous applications, including public safety, agriculture, and transportation. Recent advancements in artificial intelligence (AI) and deep learning (DL) have shown the potential to enhance weather forecasting accuracy and speed. In this study, we developed a short-term hourly weather forecast framework with a wavelet transform function for data preprocessing and a spatiotemporal DL model, PredRNN, for predicting five surface atmospheric variables, including wind speed and direction, mean sea level pressure (MSLP), temperature, and precipitation. The framework demonstrated promising results. It produces global forecasts at 0.25° (∼25 km) with a 1-day lead time RMSE of 1.8 m/s for wind components, 180 Pa for MSLP, and 1.8 K for temperature. Although our model does not surpass state-of-the-art AI weather forecast models across all metrics, it outperforms these models in precipitation forecasting and wind prediction at short lead times and achieves comparable accuracy for MSLP. Its native hourly forecasting capability, together with training on widely accessible GPU hardware, contributes meaningfully to the advancement of accessible DL weather forecasting methods. Our work highlights the importance of integrating temporal components and data transformation techniques to improve the predictability and accuracy of weather forecasts.

Tran, Hoang [Pacific Northwest National Laboratory↗

Minimum feature size control in level set topology optimization via density fields

A level set topology optimization approach that uses an auxiliary density field to nucleate holes during the optimization process and achieves minimum feature size control in optimized designs is explored. The level set field determines the solid-void interface and the density field describes the distribution of a fictitious porous material using the solid isotropic material with penalization. These fields are governed by two sets of independent optimization variables which are initially coupled using a penalty for hole nucleation. The strength of the density field penalization and projection is gradually increased during the optimization process to promote a 0-1 density distribution. In addition, a second penalty regulates the evolution of the density field in the void phase. The treatment of the density field combined with the second penalty mitigate the appearance of small design features. The minimum feature size of optimized designs is controlled by the radius of the linear filter applied to the density optimization variables. The structural response is predicted by the extended finite element method, the sensitivities by the adjoint method, and the optimization variables are updated by a gradient-based optimization algorithm. Numerical examples investigate the robustness of this approach with respect to algorithmic parameters and mesh refinement. The results show the applicability of the combined density level set topology optimization approach for both optimal hole nucleation and for minimum feature size control in 2D and 3D. This comes, however, at the cost of a more complex problem formulation and additional computational cost due to an increased number of optimization variables.

42 ENGINEERING↗

Prediction of fatigue-crack growth in a high-strength aluminum alloy under variable-amplitude loading

The present paper is concerned with the application of an analytical crack-closure model to study crack growth under various load histories. The model was based on a crack-tip plasticity concept like the Dugdale model, but modified to leave plastically deformed material in the wake of the advancing crack tip. The effect of material thickness on plasticity was accounted for by using a constraint factor on tensile yielding at the crack tip. The model was used to correlate crack-growth rates under constant-amplitude loading, and to predict crack growth under variable-amplitude loading on a high-strength aluminum alloy (7475-T7351) sheet material. The experimental data were obtained from Zhang et al. Predicted crack-growth lives agreed well with experimental data. For ten crack-growth tests subjected to various variable-amplitude load histories, the ratio of predicted-to-experimental lives ranged from 0.54 to 1.19. The mean value of the ratio of predicted-to-experimental lives was 0.95 and the standard error was 0.2 using a constraint factor of 1.9 in the model. Crack-opening stresses calculated from the model were significantly different from those determined by Zhang et al. using a striation-based experimental method.

Newman, J. C., Jr.↗

Soil enzymes as indicators of soil function: A step toward greater realism in microbial ecological modeling

Soil carbon (C) and nitrogen (N) cycles and their complex responses to environmental changes have received increasing attention. However, large uncertainties in model predictions remain, partially due to the lack of explicit representation and parameterization of microbial processes. One great challenge is to effectively integrate rich microbial functional traits into ecosystem modeling for better predictions. Here, using soil enzymes as indicators of soil function, we developed a competitive dynamic enzyme allocation scheme and detailed enzyme-mediated soil inorganic N processes in the Microbial-ENzyme Decomposition (MEND) model. We conducted a rigorous calibration and validation of MEND with diverse soil C-N fluxes, microbial C:N ratios, and functional gene abundances from a 12-year CO 2 × N grassland experiment (BioCON) in Minnesota, USA. In addition to accurately simulating soil CO 2 fluxes and multiple N variables, the model correctly predicted microbial C:N ratios and their negative response to enriched N supply. Model validation further showed that, compared to the changes in simulated enzyme concentrations and decomposition rates, the changes in simulated activities of eight C-N-associated enzymes were better explained by the measured gene abundances in responses to elevated atmospheric CO 2 concentration. In conclusion, our results demonstrated that using enzymes as indicators of soil function and validating model predictions with functional gene abundances in ecosystem modeling can provide a basis for testing hypotheses about microbially mediated biogeochemical processes in response to environmental changes. Further development and applications of the modeling framework presented here will enable microbial ecologists to address ecosystem-level questions beyond empirical observations, toward more predictive understanding, an ultimate goal of microbial ecology.

59 BASIC BIOLOGICAL SCIENCES↗

Probabilistic Thermomechanical Fatigue of Polymer Matrix Composites

Traditional computational approaches for predicting the life and long-term behavior of materials rely on empirical data and are neither generic nor unique in nature. Also, those approaches are not easy to implement in a design procedure in an effective, integrated manner. The focus of ongoing research at the NASA Lewis Research Center has been to develop advanced integrated computational methods and related computer codes for a complete reliability-based assessment of composite structures. These methods - which account for uncertainties in all the constituent properties, fabrication process variables, and loads to predict probabilistic micromechanics, ply, laminate, and structural responses - have already been implemented in the Integrated Probabilistic Assessment of Composite Structures (IPACS) computer code. The main objective of this evaluation is to illustrate the effectiveness of the methodology to predict the long-term behavior of composites under combined mechanical and thermal cyclic loading conditions.

Chamis, Christos C.↗

The effect of latent heat release on synoptic-to-planetary scale wave interactions and implications for satellite observations: Observational study

Researchers have been exploring methods to facilitate the prediction of rapidly intensifying surface cyclones. Recognizing that synoptic-scale systems, such as these cyclones, are less predictable at medium range and beyond than are planetary-scale circulations, researchers propose that the planetary-scale environment for explosive cyclogenesis could be better predicted than the cyclones themselves. Researchers have therefore constructed a planetary-scale climatology of explosive cyclogenesis by compositing together filtered 500 mb height fields (retaining planetary waves only) corresponding to a large sample of rapidly intensifying surface cyclones, stratified geographically and according to the direction of 500 mb geostrophic flow (southwesterly, northwesterly or westerly) over the cyclone center. The composites are calculated from five days preceding to five days following each rapid cyclogenesis event, and have climatology subtracted so that the evolution of planetary-scale anomalies before and after cyclogenesis can be followed. Whether the anomalies are distinct from background variability and thus provide predictive value is now being evaluated. Following explosive cyclogenesis over which the filtered 500 mb flow is southwesterly, there appear in the composites large positive 500 mb height anomalies downstream. In some cases, these anomalies are associated with blocking patterns. Whether the objectively-defined blocking patterns in the data set are preceded by upstream intense surface cyclone activity is being investigated. Finally, the contribution of synoptic-scale processes, notably warm air advection, to planetary-scale height rises during a block formation following an explosive cyclogenesis event is being diagnosed. Researchers hope to eventually evaluate the impact of satellite derived latent heat release upon the warm air advection in this case.

Colucci, Stephen J.↗

Supervisory sampling and control: Sources of suboptimality in a prediction task

A process supervisor is defined as a person who decides when to sample the process input and what values of a control variable to specify in order to maximize (minimize) a given value function of input sampling period, control setting, and process state. Presented experimental data in such a process where the value function is a time-averaged sampling cost plus mean squared difference between input and control variable. The task was unpaced prediction of the output of a second order filter driven by white noise. Experimental results, when compared to the optical strategy, reveal several consistently suboptimal behaviors. One is a tendency not to choose a long prediction interval even though the optimal strategy dictates that one should. Some results are also interpreted in terms of those input parameters according to which each subjects' behavior would have been nearest optimal. Differences of those parameters from actual input parameters served to quantify how subjects' prediction behavior differed from optimal.

Sheridan, T. B.↗