MultiProBE Software Platform
MultiProBE Software Platform is cloud based multi-omic data repository and data processing compute platform.
Wright, Devin↗
SEARCH · Engineering Papers
Results for “software”
Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.
Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.
Lab-on-a-Fish Monitoring Software V1.0
This is the original monitoring software for processing and displaying data for Lab-on-a-Fish. Lab-on-a-Fish simultaneously evaluates and monitors the health, behavior, and environment of fish or small aquatic species. The sensor is a miniaturized underwater monitoring system that measures animal behavior (acceleration and gyration); physiology (electrocardiogram and electromyogram); and environmental parameters (temperature, pressure, and magnetic sensor).
Deng, Daniel↗
Build Optimization Software Tools (BOOST) v2.0.0
Build Optimization Software Tools (BOOST) accelerate the design of DNA, RNA and protein sequences for their synthesis and assembly in an automated and scalable fashion. The BOOST Juggler automates the following two design tasks: - Reverse-Translation of protein sequences into DNA sequences - Codon Juggling of DNA sequences The BOOST Polisher provides the following design tasks: - The Verification of DNA sequences against DNA synthesis constraints - The Modification of DNA sequences in case they violate any DNA synthesis constraint In addition, the BOOST Polisher can be instructed to verify and modify DNA sequences against sequence patterns, such as restriction sites. The BOOST Partitioner supports both Gibson/chewback and Yeast assembly (also known as Transformation-Associated Recombination, or TAR) methods when performing the decomposition of large sequences that exceed the maximum length of DNA synthesis into synthesizable building blocks. The Partitioner can be instructed to find building blocks with appropriate overlap sequences, making their assembly into the complete construct more efficient. BOOST Workflows enable, in a customized fashion, the execution of the Juggler, Polisher, and Partitioner tools on a batch of sequences.
Sharkey, Michael↗
Data-Driven Protection Software to classify fault locations by protective zone in distribution systems with high PV penetration
The software contains (a) the source codes to generate Point-on-Wave (PoW) transient data for any feeder model in Alternative Transient Program (ATP) format. Codes provide options to change different steady state settings, including the loading condition and PV capacity and transient state setting like faults type, location and initiation time (b) data post-processing source code to converted data from native format to COMTRADE, csv, HDF5 (c) Docker container to train CNN to classify fault locations by protective zone. The container takes dataset and other training parameters (sampling rate, training epochs, batch size etc) as input to train CNN. The container writes back the trained CNN model, training and testing metrics and plots to the local workstation
Ramesh, Meghana↗
EXTENDED VERSION OF SOFTWARE POLYLAUE
(SF-24-031) Software PolyLaue, having ANL OPEN SOURCE LICENSE, will be extended by KITWARE, INC. New functionality, including file manager, visualizer and mapping routine will substantially improve the procedure to identify single-crystals across compression with Laue diffraction technique.
Popov, DmitryYu↗
Arbitrary State Preparation via Quantum Walks Software
SF-24-077 Our software generates a circuit that prepares a specified target quantum state. It generates circuits with CNOT counts of O(mn), where m is the number of nonzero amplitudes of the state and n is the number of qubits. The method does not require ancillas. It is designed for sparse states, but works for any quantum state. Our method is based on the new perspective of dynamic continuous time quantum walks for quantum state preparation. This is an intuitive perspective where a graph is first constructed to traverse the basis states. The method works by 1.) construct a graph of the basis states, 2.) transform the graph into quantum walks, and 3.) construct the final gate based circuit optimized with our control reduction method.
Liu, Ji↗
Haven beamline control software
A suite of beamline controls software based on the Bluesky framework. SF-23-122
Wolfman, Markf↗
Post Irradiation Examination Dislocation Defect Detection Software
This software provides dislocation-type defect identification and segmentation using a standard open source computer vision model, YOLOv8, that leverages transfer learning to create a highly effective dislocation defect quantification tool while using only a minimal number of expert annotated micrographs for training. This model demonstrates the ability to segment both dislocation lines and loops concurrently in micrographs with high pixel noise levels and on multiple alloys. It includes multiple layers of frozen layers used for transfer learning from multidisciplinary data and is extensible to alloys that are not included in the training dataset.
Anderson, MatthewW↗
H3D Data Acquisition Software (H3DDAQ) v1.0
A python library to enable readout of data from commercial H3D gamma-ray detectors. This software perform readout of data and system status, as well as starting and stopping measurements, with either WebREST (HTTP), XML (N42.42), or Binary (FlatBuffers) interfaces.
Joshi, Tenzing↗
USPAS Digital Low-Level RF firmware and software suite (uspas_llrf) v1.0
The USPAS Digital Low-Level RF firmware and software suite was originally developed for the USPAS 2023 LLRF course, for demonstrating the close loop RF control on the BerkeleyLab Marble FPGA carrier and Zest digitizer platform in controlling the RF field for various accelerators. The suite features Register-transfer level (RTL) designs for the board-support layer, digital signal processing and verification test benches, system-on-chip architecture, and Experimental Physics and Industrial Control System (EPICS) support, utilizing a open-source tool chain.
Du, Qiang↗
Software For Advanced Large-scale Analysis Of Magnetic Confinement For Numerical Design, Engineering & Research (salamander)
As magnetic confinement fusion energy gains traction internationally to enable abundant energy production, designing components for fusion systems is a pressing challenge. During the planned lifetime of a fusion device, components evolve in extreme environments and must withstand large, repeated thermal loads and bombardment by 14 MeV neutrons, plasma ions, and neutral particles (deuterium, tritium, and helium), corrosive conditions, etc. All these physical processes take place simultaneously, interact in intricate ways, and impose important constraints that can affect performance. Experimental data is rare and costly to obtain, making design particularly challenging. Predictive computational frameworks must be an integral part of an accelerated and cost-effective design process by modeling fusion system performance in simulated environments. To better understand component degradation and operational impacts on their performance, the Software for Advanced Large-scale Analysis of MAgnetic confinement for Numerical Design, Engineering & Research (SALAMANDER) is designed as an open-source, fully integrated, multiphysics, multiscale, NQA-1 compliant framework facilitating 3D, high-fidelity fusion system modeling. To that end, SALAMANDER is a MOOSE-based framework, and therefore leverages MOOSE upstream libraries such as PETSc and libMesh to deliver sophisticated finite element, finite volume, and nonlinear solver technology for fusion energy simulations. SALAMANDER couples MOOSE physics module capabilities—such as thermal hydraulics, heat conduction, Navier-Stokes, and thermomechanics—with tritium transport via TMAP8, neutronics via Cardinal, and nascent particle-in-cell capabilities. Direct simulation Monte Carlo methods will be used to address neutral transport near the walls. By coupling all these physics in an integrated application, SALAMANDER will enable high-fidelity modeling of irradiation levels and plasma exposure conditions of plasma facing components and their impact on heat and tritium distributions, as well as the resulting mechanical constraints experienced by the plasma facing components and performance of blanket systems. Furthermore, SALAMANDER will be particularly suited for engineering studies thanks to the stochastic tool module readily available in MOOSE, allowing for extended uncertainty quantification and risk analysis studies. It is also able to use computer-aided design (CAD) meshes to model complex geometries, which is indispensable for fusion systems. SALAMANDER therefore supports design, safety, engineering, and research projects for magnetic confinement fusion systems
Simon, Pierre-Clement [Idaho National Laboratory (↗
Disclosure of the XRD pipeline software
The XRD pipeline software is a program to reduce 2D X-ray diffraction data from area detectors with advanced algorithms on automatic masking and image segmentation, which help characterization of multiple phases recorded in the data and facilitate data analysis.SF-25-114
XU, WENQIAN [Argonne National Laboratory (ANL), Ar↗
RFSoC based digital low level RF control firmware and software suite (mimo_llrf) v1.0
It features a framework of a firmware and software architecture in support of building a digital low-level RF control system for accelerators, where precised digital RF generation and measurement are needed across many RF channels. It primarily supports the Xilinx RFSoC chips (xczu48dr, xczu47dr, xczu29dr) and their evaluation boards (zcu208, zcu216), for a highly integrated solution enabling the need for synchronous low-level RF systems, including: multi-tile synchronization, external reference for sampling clocks, deterministic delay, aligned NCO phase for digital mixers, and built-in EPICS IOC.
Du, Qiang [Lawrence Berkeley National Laboratory (↗
PhasorNetworks.jl: A Software Package for Simulating Oscillatory Neural Networks
SF-25-156 software package to enable the efficient simulation of large-scale neural networks compatible with neuromorphic (biologically-inspired) hardware systems.
Olin-Ammentorp, Wilkie [Argonne National Laborator↗
Open Source Software Prevalence Ingest Tool
The OSSP Ingest Tool accepts user-input organizational information, ingests IT/OT asset lists in Excel format, and ingests the associated CycloneDX SBOM's. It then performs analytics demonstrating the ability to answer the follow research questions: o RQ1. Ability to identify all OSS services running on, and all OSS components present within, an OT device o RQ1a: Ability to differentiate multiple versions of the same OSS component within each OT device. o RQ1b: Ability to differentiate running from not-running OSS components. o RQ1c: Ability to differentiate based on the originator of the component, because a supplier may have modified it after retrieval from the upstream software source. o RQ2. Ability to correlate the identity of a single OSS component across multiple OT devices, mitigating common name variations such as differences in capitalization, '-' vs '_', and so on. o RQ3. Ability to perform subset analysis of OSS components across multiple OT devices o RQ3a: Ability to perform subset analysis across OSS libraries, generating density & distribution graphs to identify commonly-used libraries and outliers. o RQ3b: Ability to perform subset analysis of a single OSS library, generating density & distribution by CI sector, by device type, by device make/model, and/or by firmware version. o RQ3c: Ability to perform subset analysis by grouping OSS libraries according to programming language, then overlay with RQ4b. o RQ3d: Ability to perform subset analysis by OSS upstream source, providing insight into degree of modifications performed by suppliers. o RQ4. Ability to identify dependencies (transitive and direct) of each differentiated OSS library within each OT device, and enable RQ1,2,3 iteratively for dependencies. o RQ1. Ability to identify all OSS services running on, and all OSS components present within, an OT device o RQ1a: Ability to differentiate multiple versions of the same OSS component within each OT device. o RQ1b: Ability Page
Kapadia, Shayna [Lawrence Livermore National Labor↗
IPC-Fusion (Infrastructure Perception and Control (IPC): Multisensor Data Fusion Software) [SWR-25-153]
As part of the National Laboratory of the Rockies' (NLR’s) Infrastructure Perception and Control Laboratory, the IPC-Fusion toolkit provides a probabilistic, scalable, multi-sensor fusion framework that integrates (late-stage fusion) heterogeneous object detection data from traffic sensors to enable robust, real-time tracking of roadway occupants. The algorithmic design of the toolkit is motivated by the need for creating a digital twin of traffic at the edge in a scalable and affordable manner. The software operates by combining object-level measurements (such as position and velocity) from a suite of sensors (such as radar, lidar, camera) using Kalman filtering and probabilistic data association techniques to overcome individual sensor limitations and achieve superior tracking performance in complex traffic zones. The framework addresses key challenges including heterogeneous measurement uncertainties, asynchronous data streams, varying spatiotemporal data resolutions, robust data association, and adaptive object lifecycle management. Validated on real-world traffic intersection data including vehicles and pedestrians, IPC-Fusion demonstrates enhanced tracking reliability across scenarios involving occlusions, sensor failures, and varying traffic densities, supporting the broader IPC initiative's goal of transforming transportation infrastructure through advanced perception capabilities for intelligent transportation systems, traffic safety applications, and autonomous vehicle support.
Sandhu, Rimple [National Laboratory of the Rockies↗
Software Control Program For Transportable Microgrid State-of-charge Balancing And Frequency Stability Controls
A deterministic state-of-charge (SOC) balancing approach software control code is introduced as an integral secondary management to primary control layer of an islanded small microgrid or nanogrid system made up of multiple grid-forming inverter/battery/solar combination systems, where each set of batteries with each inverter are on independent DC buses (i.e. non-paralleled on the DC sides). A DERMS-level control approach, algorithm and automation controller program was developed to improve coordination and enable microgrid asset compliance and SOC balancing, enabling provision of a system-level power stability support architecture, load support, and asset scalability. The architecture is configured to treat each unit or micro/nano-grid as a node in a microgrid network, allowing for autonomous DERMS control regarding load and SOC balancing and power stability. As the network grows with the addition of units, greater coordination efforts may be required. The ideal small network microgrid ranges from 2-10 inverter/battery units before additional control parameters must be considered in the existing architecture. The control approach focuses on a deterministic state-of-charge analysis as the primary level control process followed by a secondary control loop using a forced frequency-watt droop strategy to conform off-the-shelf components into behaving under a leader-follower configuration. Adopting this control scheme has been shown to allow for a balanced, unit-coordinated microgrid network, enabling stable power flow. The deterministic state-of-charge approach is introduced as an integral primary control layer of an islanded small network microgrid. A standard strategy for SOC balancing is implementing a battery management system (BMS) to control SOC on the DC side. An alternative approach is to determine how to coordinate sending and receiving power on the AC side with multiple units. The latter approach assesses all the integrated units in the microgrid network. Once the individual units are identified, further system data is required to calculate each unit's total kWh, provided information about its capability to supply or consume kWh and availability. The secondary control layer in the multi-layered small network microgrid methodology uses the primary layer’s decision to initiate frequency setpoint changes, initializing the SOC balancing. The secondary control layer considers numerous system-dependent variables to enable a charging and discharging profile based on adjustable frequency setpoints. The combined architecture will result in stable, coordinated power flow enhancing an AC microgrid's functionalities.
Myers, KurtS [Idaho National Laboratory (INL), Ida↗
Software for High-Resolution Flood Mapping With Sentinel-1 and Sentinel-2 via Misalignment-Robust Cross-Sensor Learning and Generative Despeckling
SF-26-078 This software provides a high-level workflow for satellite-based flood and surface-water mapping using Sentinel-1 SAR and Sentinel-2 multispectral imagery. It supports preparation of remote-sensing data, training and evaluation of deep-learning models, and generation of high-resolution water extent predictions, including methods to improve robustness to SAR speckle noise and cross-sensor image misalignment.
Feinstein, Jeremy [Argonne National Laboratory (AN↗