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At least 469 records · Page 26

Structure-aware annotation of leucine-rich repeat domains

Protein domain annotation is typically done by predictive models such as HMMs trained on sequence motifs. However, sequence-based annotation methods are prone to error, particularly in calling domain boundaries and motifs within them. These methods are limited by a lack of structural information accessible to the model. With the advent of deep learning-based protein structure prediction, existing sequenced-based domain annotation methods can be improved by taking into account the geometry of protein structures. We develop dimensionality reduction methods to annotate repeat units of the Leucine Rich Repeat solenoid domain. The methods are able to correct mistakes made by existing machine learning-based annotation tools and enable the automated detection of hairpin loops and structural anomalies in the solenoid. The methods are applied to 127 predicted structures of LRR-containing intracellular innate immune proteins in the model plant Arabidopsis thaliana and validated against a benchmark dataset of 172 manually-annotated LRR domains.

Xu, Boyan↗

Helium Mass Spectrometer Leak Detection: A Method to Quantify Total Measurement Uncertainty

In applications where leak rates of components or systems are evaluated against a leak rate requirement, the uncertainty of the measured leak rate must be included in the reported result. However, in the helium mass spectrometer leak detection method, the sensitivity, or resolution, of the instrument is often the only component of the total measurement uncertainty noted when reporting results. To address this shortfall, a measurement uncertainty analysis method was developed that includes the leak detector unit's resolution, repeatability, hysteresis, and drift, along with the uncertainty associated with the calibration standard. In a step-wise process, the method identifies the bias and precision components of the calibration standard, the measurement correction factor (K-factor), and the leak detector unit. Together these individual contributions to error are combined and the total measurement uncertainty is determined using the root-sum-square method. It was found that the precision component contributes more to the total uncertainty than the bias component, but the bias component is not insignificant. For helium mass spectrometer leak rate tests where unit sensitivity alone is not enough, a thorough evaluation of the measurement uncertainty such as the one presented herein should be performed and reported along with the leak rate value.

error analysis↗

Techniques and Applications of SAR interferometry for ERS-1: Topographic Mapping, Change Detection, and Slope Measurement

SAR (Synthetic Aperture Radar) interferometry allows the measurement of high resolution topography of terrain from repeat orbit SAR data sets obtained by the ERS-1 AMI (Active Microwave Instrument). The system parameters which affect the accuracy of the topographic maps are errors in determination of the interferometric baseline, non parallel orbit tracks, decorrelation caused by baseline length, thermal noise, and surface change. Surface change can be observed in the interferograms either through decorrelation of the interferometric phase, or coherent phase shifts caused by locally uniform surface displacements. Phase gradient maps can be derived directly from the complex interferograms and can be transformed into surface slopes mapped onto a geometrically corrected grid.

Charles L Werner↗

Trajectory Specification Applied to Terminal Airspace

Despite major efforts to automate air traffic control (ATC), it is still performed by humans today. The complexity and safety-criticality of ATC makes it very difficult to safely automate, but it must be automated to increase airspace capacity (the density of traffic that can be safely managed) and airport throughput (the number of arrivals and departures that an airport can safely handle in a given period of time) beyond what is possible with human controllers. This paper presents the Trajectory Specification (TS) concept, which can help to safely automate ATC. TS is a method of specifying aircraft trajectories such that the position at any given time in flight is restricted to a precisely defined bounding space, removing all ambiguity as to where the flight is allowed to be. The bounding space or volume is determined by tolerances relative to a reference trajectory (position as a function of time). The tolerances are dynamic and are based on the aircraft navigation capabilities and the traffic situation. The tolerances can be a piecewise linear function of time or distance along the route, allowing the tolerances to vary as needed, typically increasing with time for departures and decreasing for arrivals. A Trajectory Specification Language (TSL) is proposed for communicating trajectories from aircraft to ATC as requests and from ATC to aircraft as assignments. The TS concept requires a new generation of airborne Flight Management Systems (FMS) that understand the TSL and can fly the assigned trajectories, but this paper focuses on the ATC functions and the prototype ATC algorithms and software that were developed to test the TS concept. Assuming conformance, TS can guarantee safe separation for an arbitrary length of time even in the event of an ATC system or communication outage. It can help to achieve the high level of safety and reliability needed for ATC automation, and it can also reduce the reliance on ATC backup systems for tactical conflict detection and resolution during normal operation. TS can be applied to any controlled airspace, including enroute, terminal, and urban airspace, but this paper presents algorithms and software for arrival spacing and conflict detection and resolution in the terminal airspace serving a major airport. In a fast-time simulation of a full day of traffic in a major terminal airspace, all conflicts were resolved in near real time, demonstrating the computational feasibility and the preliminary operational feasibility of the TS concept. This paper is a compilation of previous papers, and it adds significant information that was omitted from those papers due to length limitations. It also updates some of the results of those earlier papers due to algorithm refinements and corrections of minor software errors.

air traffic control, trajectory↗

Search for Continuous and Transient Neutrino Emission Associated with IceCube’s Highest-energy Tracks: An 11 yr Analysis

IceCube alert events are neutrinos with a moderate-to-high probability of having astrophysical origin. In this study, we analyze 11 yr of IceCube data and investigate 122 alert events and a selection of high-energy tracks detected between 2009 and the end of 2021. This high-energy event selection (alert events + high-energy tracks) has an average probability of ≥0.5 of being of astrophysical origin. We search for additional continuous and transient neutrino emission within the high-energy events' error regions. We find no evidence for significant continuous neutrino emission from any of the alert event directions. The only locally significant neutrino emission is the transient emission associated with the blazar TXS 0506+056, with a local significance of 3σ, which confirms previous IceCube studies. When correcting for 122 test positions, the global p-value is 0.156 and compatible with the background hypothesis. We constrain the total continuous flux emitted from all 122 test positions at 100 TeV to be below 1.2 × 10 –15 (TeV cm 2 s) –1 at 90% confidence assuming an E –2 spectrum. This corresponds to 4.5% of IceCube's astrophysical diffuse flux. Overall, we find no indication that alert events in general are linked to lower-energetic continuous or transient neutrino emission.

79 ASTRONOMY AND ASTROPHYSICS↗

A Measurement of the Largest-scale CMB E -mode Polarization with CLASS

We present measurements of large-scale cosmic microwave background E-mode polarization from the Cosmology Large Angular Scale Surveyor 90 GHz data. Using 115 det-yr of observations collected through 2024 with a variable-delay polarization modulator, we achieved a polarization sensitivity of 82 μK arcimin, comparable to Planck at similar frequencies (100 and 143 GHz ). The analysis demonstrates effective mitigation of systematic errors and addresses challenges to large-angular-scale power recovery posed by time-domain filtering in maximum-likelihood map-making. A novel implementation of the pixel-space transfer matrix is introduced, which enables efficient filtering simulations and bias correction in the power spectrum using the quadratic cross-spectrum estimator. Overall, we achieved an unbiased time-domain filtering correction to recover the largest angular scale polarization, with the only power deficit, arising from map-making nonlinearity, being characterized as <3%. Through cross-correlation with Planck, we detected the cosmic reionization at 99.4% significance and measured the reionization optical depth τ = $0.053^{+0.018}_{-0.019}$, marking the first ground-based attempt at such a measurement. At intermediate angular scales (ℓ > 30), our results, both independently and in cross-correlation with Planck, remain fully consistent with Planck’s measurements.

79 ASTRONOMY AND ASTROPHYSICS↗

Homogeneity of a Global Multisatellite Soil Moisture Climate Data Record

Climate Data Records (CDR) that blend multiple satellite products are invaluable for climate studies, trend analysis and risk assessments. Knowledge of any inhomogeneities in the CDR is therefore critical for making correct inferences. This work proposes a methodology to identify the spatiotemporal extent of the inhomogeneities in a 36-year, global multisatellite soil moisture CDR as the result of changing observing systems. Inhomogeneities are detected at up to 24 percent of the tested pixels with spatial extent varying with satellite changeover times. Nevertheless, the contiguous periods without inhomogeneities at changeover times are generally longer than 10 years. Although the inhomogeneities have measurable impact on the derived trends, these trends are similar to those observed in ground data and land surface reanalysis, with an average error less than 0.003 cubic meters per cubic meter per year. These results strengthen the basis of using the product for long-term studies and demonstrate the necessity of homogeneity testing of multisatellite CDRs in general.

CDR↗

X-Ray Detection and Processing Models for Spacecraft Navigation and Timing

The current primary method of deepspace navigation is the NASA Deep Space Network (DSN). High-performance navigation is achieved using Delta Differential One-Way Range techniques that utilize simultaneous observations from multiple DSN sites, and incorporate observations of quasars near the line-of-sight to a spacecraft in order to improve the range and angle measurement accuracies. Over the past four decades, x-ray astronomers have identified a number of xray pulsars with pulsed emissions having stabilities comparable to atomic clocks. The x-ray pulsar-based navigation and time determination (XNAV) system uses phase measurements from these sources to establish autonomously the position of the detector, and thus the spacecraft, relative to a known reference frame, much as the Global Positioning System (GPS) uses phase measurements from radio signals from several satellites to establish the position of the user relative to an Earth-centered fixed frame of reference. While a GPS receiver uses an antenna to detect the radio signals, XNAV uses a detector array to capture the individual xray photons from the x-ray pulsars. The navigation solution relies on detailed xray source models, signal processing, navigation and timing algorithms, and analytical tools that form the basis of an autonomous XNAV system. Through previous XNAV development efforts, some techniques have been established to utilize a pulsar pulse time-of-arrival (TOA) measurement to correct a position estimate. One well-studied approach, based upon Kalman filter methods, optimally adjusts a dynamic orbit propagation solution based upon the offset in measured and predicted pulse TOA. In this delta position estimator scheme, previously estimated values of spacecraft position and velocity are utilized from an onboard orbit propagator. Using these estimated values, the detected arrival times at the spacecraft of pulses from a pulsar are compared to the predicted arrival times defined by the pulsar s pulse timing model. A discrepancy provides an estimate of the spacecraft position offset, since an error in position will relate to the measured time offset of a pulse along the line of sight to the pulsar. XNAV researchers have been developing additional enhanced approaches to process the photon TOAs to arrive at an estimate of spacecraft position, including those using maximum-likelihood estimation, digital phase locked loops, and "single photon processing" schemes that utilize all available time data associated with each photon. Using pulsars from separate, non-coplanar locations provides range and range-rate measurements in each pulsar s direction. Combining these different pulsar measurements solves for offsets in position and velocity in three dimensions, and provides accurate overall navigation for deep space vehicles.

Sheikh, Suneel↗

Pushing the Boundaries of Coherence in Superconducting Quantum Systems at the SQMS Center for Computing, Sensing, and Metrology

This talk will highlight recent advances at the SQMS Center in understanding and mitigating decoherence in superconducting quantum systems, focusing on both transmon qubits and 3D superconducting cavities. I will present results from systematic studies of materials and devices, aimed at identifying key sources of loss: including two-level systems (TLS), quasiparticles, and other noise mechanisms. These studies span microwave loss characterization in materials such as niobium, tantalum, aluminum, and their native oxides, as well as substrate losses in silicon and sapphire. Using both qubits and cavities, we disentangle subsystem contributions to loss and develop a hierarchy of mitigation strategies. Through these efforts, we have achieved transmon coherence times exceeding one millisecond. I will also present investigations into quasiparticle dynamics, including bursts observed in qubits located above ground and in the Gran Sasso underground laboratory. Additional studies explore temperature dependence to distinguish between TLS and quasiparticle losses, and reveal that applying a magnetic field can reduce temporal T1 fluctuations in transmons. Building on these results, we demonstrate a record-coherence two-cell cavity-qudit system with coherence times exceeding 20 milliseconds. By leveraging sideband interactions and error-resilient protocols including measurement-based correction and post-selection, we achieve high-fidelity quantum state control. This includes preparation of Fock states up to N = 20 with fidelities over 95%, and two-mode entanglement with coherence-limited fidelities reaching 99.9% after post-selection. These achievements position the SQMS platform as a powerful foundation for scalable quantum information processing and high-dimensional qudit encodings. Finally, I will discuss how these ultra-coherent systems are being deployed in emerging quantum sensing applications, including dark matter searches and gravitational wave detection.

Roy, Tanay [Fermilab]↗

Selection of optimal wavelengths for optical soiling modelling and detection in photovoltaic modules

Soiling impacts the photovoltaic (PV) module performance by decreasing the amount of light reaching the photovoltaic cells and by changing their external spectral response. Currently, the soiling monitoring market is moving toward optical sensors that measure transmittance or reflectance, rather than directly measuring the impact of soiling on the performance of photovoltaic modules. These sensors, which use a single optical measurement, are not able to correct the soiling losses that depend on the solar irradiance spectra and on the spectral response of the monitored PV material. This work investigates methods that can improve the optical detection of soiling by extracting the full soiling spectrum profiles using only two or three monochromatic measurements. Spectral transmittance data, measured with a spectrophotometer and collected during a 46-week experimental soiling study carried out in Jaén, Spain, was analysed in this work. The use of a spectral profile for the hemispherical transmittance of soiled PV glass is found to significantly improve the soiling detection, returning the lowest errors independently of the PV materials and irradiance conditions. In addition, this work shows that it is also possible to select the measurement wavelengths to minimize the soiling loss detection error depending on the monitored PV semiconductor material (silicon, CdTe, a-Si, CIGS and a representative perovskite). The approaches discussed in this work are also found to be more robust to potential measurement errors compared to single wavelength measurement techniques.

14 SOLAR ENERGY↗

Bias properties of extragalactic distance indicators. 3: Analysis of Tully-Fisher distances for the Mathewson-Ford-Buchhorn sample of 1355 galaxies

The observational selection bias properties of the large Mathewson-Ford-Buchhorn (MFB) sample of axies are demonstrated by showing that the apparent Hubble constant incorrectly increases outward when determined using Tully-Fisher (TF) photometric distances that are uncorreted for bias. It is further shown that the value of H(sub 0) so determined is also multivlaued at a given redshift when it is calculated by the TF method using galaxies with differenct line widths. The method of removing this unphysical contradiction is developed following the model of the bias set out in Paper II. The model developed further here shows that the appropriate TF magnitude of a galaxy that is drawn from a flux-limited catalog not only is a function of line width but, even in the most idealistic cases, requires a triple-entry correction depending on line width, apparent magnitude, and catalog limit. Using the distance-limited subset of the data, it is shown that the mean intrinsic dispersion of a bias-free TF relation is high. The dispersion depends on line width, decreasing from sigma(M) = 0.7 mag for galaxies with rotational velocities less than 100 km s(exp-1) to sigma(M) = 0.4 mag for galaxies with rotational velocities greater than 250 km s(exp-1). These dispersions are so large that the random errors of the bias-free TF distances are too gross to detect any peculiar motions of individual galaxies, but taken together the data show again the offset of 500 km s(exp-1) fond both by Dressler & Faber and by MFB for galaxies in the direction of the putative Great Attractor but described now in a different way. The maximum amplitude of the bulk streaming motion at the Local Group is approximately 500 km s(exp-1) but the perturbation dies out, approaching the Machian frame defined by the CMB at a distance of approximately 80 Mpc (v is approximately 4000 km s(exp -1)). This decay to zero perturbation at v is approximately 4000 km s(exp -1) argues against existing models with a single attraction at approximately 4500 km s(exp -1) (the Great Attactor model) pulling the local region. Rather, the cause of the perturbation appears to be the well-known clumpy mass distribution within 4000 km s(exp -1) in the busy directions of Hydra, Centaurus, Antila and Dorado, as postulated earlier (Tammann & Sandage 1985).

Federspiel, Martin↗

Correction: A universal method for sensitive and cell-free detection of CRISPR-associated nucleases

In the original article, incorrect grant information from the Department of Energy was provided. The corrected Acknowledgementssection is provided below, with the correct grant number:This work was supported by the Burroughs Wellcome Fund (Career Award at the Scientific Interface to A. C.), DARPA (BrdiN66001-17-2-4055 to A. C.), NIH (1R21AI126239-01 to A. C.), Army Research Office award W911NF1610586 (to A. C.), and by theDepartment of Energy through grant DE-SC0010595 to E. F., which supported the salary of H. K. K. S. This work is dedicated toProfessor Ronald T. Raines on the occasion of his 60th birthday.The Royal Society of Chemistry apologises for these errors and any consequent inconvenience to authors and readers.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Investigation of several aspects of LANDSAT-4 data quality

No insurmountable problems in change detection analysis were found when portions of scenes collected simultaneously by LANDSAT 4 MSS and either LANDSAT 2 or 3. The cause of the periodic noise in LANDSAT 4 MSS images which had a RMS value of approximately 2DN should be corrected in the LANDSAT D instrument before its launch. Analysis of the P-tape of the Arkansas scene shows bands within the same focal plane very well registered except for the thermal band which was misregistered by approximately three 28.5 meter pixels in both directions. It is possible to derive tight confidence bounds for the registration errors. Preliminary analyses of the Sacramento and Arkansas scenes reveals a very high degree of consistency with earlier results for bands 3 vs 1, 3 vs 4, and 3 vs 5. Results are presented in table form. It is suggested that attention be given to the standard deviations of registrations errors to judge whether or not they will be within specification once any known mean registration errors are corrected. Techniques used for MTF analysis of a Washington scene produced noisy results.

Wrigley, R. C.↗

Design, characterization and indoor validation of the optical soiling detector “DUSST”

Nowadays, photovoltaic (PV) technology has reached a high level of maturity in terms of module efficiency and cost competitiveness in comparison with other energy technologies. As PV has achieved high levels of deployment, the development of devices that can help to reduce PV operation and maintenance costs has become a priority. Soiling can be cause of significant losses in certain PV plants and its detection has become essential to ensure a correct mitigation. For this reason, accurate and low-cost monitoring devices are needed. While soiling stations have been traditionally employed to measure the impact of soiling, their high cost and maintenance have led to the development of innovative low-cost optical sensors, such as the device presented in this work and named “DUSST” (Detector Unit for Soiling Spectral Transmittance). The thermal characterization of DUSST’s components and the methodology used to predict soiling transmittance losses are presented in this study. The results demonstrate that the losses can be predicted with an error lower than 1.4%. The method has been verified with an experimental campaign with naturally soiled coupons exposed outdoors in Jaén, Spain.

14 SOLAR ENERGY↗

SeaWiFS Technical Report Series: SeaWiFS Calibration and Validation Quality Control Procedures - Volume 38

This document provides five brief reports that address several quality control procedures under the auspices of the Calibration and Validation Element (CVE) within the Sea-viewing Wide Field-of-view Sensor (SeaWiFS) Project. Chapter 1 describes analyses of the 32 sensor engineering telemetry streams. Anomalies in any of the values may impact sensor performance in direct or indirect ways. The analyses are primarily examinations of parameter time series combined with statistical methods such as auto- and cross-correlation functions. Chapter 2 describes how the various onboard (solar and lunar) and vicarious (in situ) calibration data will be analyzed to quantify sensor degradation, if present. The analyses also include methods for detecting the influence of charged particles on sensor performance such as might be expected in the South Atlantic Anomaly (SAA). Chapter 3 discusses the quality control of the ancillary environmental data that are routinely received from other agencies or projects which are used in the atmospheric correction algorithm (total ozone, surface wind velocity, and surface pressure; surface relative humidity is also obtained, but is not used in the initial operational algorithm). Chapter 4 explains the procedures for screening level-, level-2, and level-3 products. These quality control operations incorporate both automated and interactive procedures which check for file format errors (all levels), navigation offsets (level-1), mask and flag performance (level-2), and product anomalies (all levels). Finally, Chapter 5 discusses the match-up data set development for comparing SeaWiFS level-2 derived products with in situ observations, as well as the subsequent outlier analyses that will be used for evaluating error sources.

Hooker, Stanford B.↗

Coexistent quantum channel characterization using quantum process tomography with spectrally resolved detection

The coexistence of classical and quantum signals over the same optical fiber is critical for quantum networks operating within the existing communications infrastructure. Here, we characterize the quantum channel that results from distributing approximate single-photon polarization-encoded qubits simultaneously with classical light of varying intensities through a 25 km fiber-optic channel. We use spectrally resolved quantum process tomography with a newly developed Bayesian reconstruction method to estimate the quantum channel from experimental data, both with and without classical noise. Furthermore, we show that the coexistent fiber-based quantum channel has high process fidelity with an ideal depolarizing channel if the noise is dominated by Raman scattering. These results aid future development of quantum repeater designs and quantum error-correcting codes which benefit from realistic channel error models.

Chapman, Joseph↗

A method for correcting aspect solution errors in ROSAT HRI observations of compact sources

X-ray point sources observed with the ROSAT High Resolution Imager (HRI) often appear elongated over scales of approximately 5 sec-10 sec from the image core. This elongation has been attributed to errors in the attitude correction as the satellite is wobbled during the observations, and affects sources with both soft and hard X-ray spectra. In this paper, I report the results of an attempt to rid a high signal-to-noise observation of the soft X-ray point source HZ 43 of its characteristic elongation. I divided the observation into 181 separate images, each containing photons from only a small region on the detector through which the source passed during the satellite's wobble. By measuring the positions of the individual image centroids, I found clear evidence for systematic offsets from a common mean by up to approximately +/- 3 sec in both right ascension and declination as a function of phase in the satellite wobble. Shifting the subimages to a common center and then restacking them into a single image measurably improved the symmetry of the point-spread function. HRI observations are wobbled primarily to smooth out variations in the pixel-to-pixel sensitivity of the detector and also to extend the lifetime of the microchannel plates in the detector since these decay at a given location as a function of the number of photons detected. However, the elongations introduced by the aspect errors inhibit the identification of possible extended X-ray emission associated with sources such as pulsars and active galactic nuclei. In light of these results, I suggest that until the aspect errors are understood, observations of compact sources, where this effect may be important, should not be wobbled.

Morse, Jon A.↗

A model of the 1.6 GHz scatterometer

The performance was studied of the 1.6 GHz airborne scatterometer system which is used as one of several Johnson Space Center (JSC) microwave remote sensors to detect moisture content of soil. The system is analyzed with respect to its antenna pattern and coupling, the signal flow in the receiver data channels, and the errors in the signal outputs. The operational principle and the sensitivity of the system, as well as data handling are also described. The finite cross-polarized gains of all four 1.6 GHz scatterometer antennae are found to have profound influence on the cross-polarized backscattered signal returns. If these signals are not analyzed properly, large errors could result in the estimate of the cross-polarized coefficient. It is also found necessary to make corrections to the variations of the aircraft parameters during data reduction in order to minimize the error in the coefficient estimate. Finally, a few recommendations are made to improve the overall performance of the scatterometer system.

Wang, J. R.↗