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At least 469 records · Page 26

Metagenome-Assembled Genome Sequences of Acetobacterium sp. Strain MES1 and Desulfovibrio sp. Strain MES5 from a Cathode-Associated Acetogenic Microbial Community

ABSTRACT Draft genome sequences of Acetobacterium sp. strain MES1 and Desulfovibrio sp. strain MES5 were obtained from the metagenome of a cathode-associated community enriched within a microbial electrosynthesis system (MES). The draft genome sequences provide insight into the functional potential of these microorganisms within an MES and a foundation for future comparative analyses.

59 BASIC BIOLOGICAL SCIENCES↗

Implementation of ISO 15118-202 messages within Everest EV Charging Open Source Framework [SWR-25-56]

This software implements the messages defined in the ISO 15118-202 standard within the Everest EV Charging open source framework. The protocol and messages defined in the ISO 15118-202 standard enable the exchange of additional information which is not available for exchange within the currently deployed EV/EVSE communications protocols. This information includes co-identification parameters, error message exchange and more. This fork of the everest-core repository adds a prototype of the Extensible Supply Equipment Communication Controller (SECC) Discovery Protocol (ESDP) implemented based on a draft of the ISO 15118-202 standard. This is achieved through additions and modifications to the EvseV2G module. The implementation provides a demonstration of the ESDP messages, encoding and decoding but does not include a full integration within the Everest framework. Much of the information being sent over ESDP in this implementation is set statically for the sake of demonstrating the protocol itself. This fork of the ext-switchev-iso15118 repository adds a prototype of the Extensible Supply Equipment Communication Controller (SECC) Discovery Protocol (ESDP) implemented based on a draft of the ISO 15118-202 standard. The implementation provides a demonstration of the ESDP messages, encoding and decoding but does not include a full integration within the Everest framework. Much of the information being sent over ESDP in this implementation is set statically for the sake of demonstrating the protocol itself. This fork adds the ESDP features for only the EVCC controller because that is the only portion that is utilized in the everest Software-in-the-Loop.

Watt, Ed [National Renewable Energy Laboratory (NR↗

A machine learning-based service for estimating quality of genomes using PATRIC

Recent advances in high-volume sequencing technology and mining of genomes from metagenomic samples call for rapid and reliable genome quality evaluation. The current release of the PATRIC database contains over 220,000 genomes, and current metagenomic technology supports assemblies of many draft-quality genomes from a single sample, most of which will be novel. We have added two quality assessment tools to the PATRIC annotation pipeline. EvalCon uses supervised machine learning to calculate an annotation consistency score. EvalG implements a variant of the CheckM algorithm to estimate contamination and completeness of an annotated genome.We report on the performance of these tools and the potential utility of the consistency score. Additionally, we provide contamination, completeness, and consistency measures for all genomes in PATRIC and in a recent set of metagenomic assemblies. EvalG and EvalCon facilitate the rapid quality control and exploration of PATRIC-annotated draft genomes.

59 BASIC BIOLOGICAL SCIENCES↗

Metagenomic analysis of basal ice from an Alaskan glacier

Background Glaciers cover ~ 10% of land but are among the least explored environments on Earth. The basal portion of glaciers often harbors unique aquatic microbial ecosystems in the absence of sunlight, and knowledge on the microbial community structures and their metabolic potential is very limited. Here, we provide insights into the microbial lifestyle present at the base of the Matanuska Glacier, Alaska. Results DNA and RNA were extracted from samples of the Matanuska Glacier basal ice. Using Illumina MiSeq and HiSeq sequencing, we investigated the microbial diversity with the metagenomic shotgun reads and 16S ribosomal RNA data. We further assembled 9 partial and draft bacterial genomes from the metagenomic assembly, and identified key metabolic pathways such as sulfur oxidation and nitrification. Collectively, our analyses suggest a prevalence of lithotrophic and heterotrophic metabolisms in the subglacial microbiome. Conclusion Our results present the first metagenomic assembly and bacterial draft genomes for a subglacial environment. These results extend our understanding of the chemical and biological processes in subglacial environments critically influenced by global climate change.

54 ENVIRONMENTAL SCIENCES↗

Reclassification of Botryococcus braunii chemical races into separate species based on a comparative genomics analysis

The colonial green microalga Botryococcus braunii is well known for producing liquid hydrocarbons that can be utilized as biofuel feedstocks. B. braunii is taxonomically classified as a single species made up of three chemical races, A, B, and L, that are mainly distinguished by the hydrocarbons produced. We previously reported a B race draft nuclear genome, and here we report the draft nuclear genomes for the A and L races. A comparative genomic study of the three B. braunii races and 14 other algal species within Chlorophyta revealed significant differences in the genomes of each race of B. braunii. Phylogenomically, there was a clear divergence of the three races with the A race diverging earlier than both the B and L races, and the B and L races diverging from a later common ancestor not shared by the A race. DNA repeat content analysis suggested the B race had more repeat content than the A or L races. Orthogroup analysis revealed the B. braunii races displayed more gene orthogroup diversity than three closely related Chlamydomonas species, with nearly 24-36% of all genes in each B. braunii race being specific to each race. This analysis suggests the three races are distinct species based on sufficient differences in their respective genomes. We propose reclassification of the three chemical races to the following species names: Botryococcus alkenealis (A race), Botryococcus braunii (B race), and Botryococcus lycopadienor (L race).

59 BASIC BIOLOGICAL SCIENCES↗

M4FT-16LL080303052-State of Knowledge for Colloid Facilitated Radionuclide Transport and Update on Actinide Diffusion in Bentonite Backfill

This progress report (Level 4 Milestone Number M4FT-16LL080303052) summarizes research conducted at Lawrence Livermore National Laboratory (LLNL) within the Crystalline Disposal R&D Activity Number FT-16LL080303051 and Crystalline International Collaborations Activity Number FT-16LL080303061. The focus of this research is the interaction of radionuclides with Engineered Barrier System (EBS) and host rock materials at various physico-chemical conditions relevant to subsurface repository environments. They include both chemical and physical processes such as solubility, sorption, and diffusion. The colloid-facilitated transport effort focused on preparation of a draft manuscript summarizing the state of knowledge and parameterization of colloid-facilitated transport mechanisms in support of reactive transport and performance assessment models for generic crystalline repositories. This draft manuscript is being submitted as a level 3 milestone with LANL as the primary author. LLNL’s contribution to that effort is summarized only briefly in the present report. A manuscript summarizing long-term U(VI) diffusion experiments through bentonite backfill material was recently accepted for publication; the contents of that manuscript are summarized in the present report. The Np(IV) diffusion experiments were started mid-year and are ongoing. The completion of these experiments is planned for early FY17. Our progress in quantifying Np(IV) diffusion in bentonite backfill is summarized in the present report. Our involvement with the NEA TDB project was summarized in a recent Argillite Disposal activity report. It is not included in this report.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

Nuclear Technology Research and Development (NTRD) Technical Monthly July FY17

The OECD/NEA EGATFL deliverable on systems assessment (Task Force 1 in the expert group, chaired by S. Bragg-Sitton) was submitted to the full expert group for review and final edits in early June. Additional comments and modified sections of country-specific information were submitted in mid-July. They are being incorporated prior to submission for final editing by NEA. A complete draft of the state-of-the-art report on accident tolerant fuel and cladding was distributed by the leads of Task Forces 2 and 3 at the end of July (updated from the draft distributed in June). This report is now under review by the full expert group, with a target completion of all edits by the end of September. (S. Bragg-Sitton)

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

Precision Local Positioning System

The primary goal of the project is to lay the groundwork for a new system design, meaning that at the end of this project’s effort, a traditional LLNL project could begin. For this goal to be met, the overarching needs of potential sponsors and stakeholders must be analyzed and understood, and a clear statement of work should be able to be drafted from the finding in this report. More specifically, the results from this project should immediately feed into the drafting of requirements, an implementation plan, and a budget plan for a future project. In order to accomplish this goal, the team set a broad framework for work to be completed. First, conduct current market research and select reference technologies to decompose. From the decompositions, analyze shortcomings, possible pain-points and form metrics and architectural decisions. Next, analyze the potential market area by interviewing/researching stakeholders and understanding their needs. As an additional project goal, attempt to capture as large a market area and scope as reasonably possible by incorporating more than the traditional LLNL sponsors. From the information gathered, study stakeholder salience and understand the relationships between stakeholders, mission areas, mission critical functions, and system metrics. Further analyze the relationships to focus on critical system aspects and to group stakeholders and mission together in order to reduce system complexity while maintaining wide marketability. Finally, begin brainstorming concepts from the established architectural decision and use the found metrics to create tradespaces to down select the most viable architectures. This document presents the team’s findings as it progressed through the project’s strategy.

42 ENGINEERING↗

Wood-to-Fuel for California's Transportation Sector using Autothermal Pyrolysis (Progress Report)

We sent our updated draft Site License Agreement back to SPI on June 4 th , with redlines. Gary Blanc of SPI said he would circulate it internally to appropriate parties and get back to us. He did not return an accepted or redlined version to us before the end of the month of July, nor did he send us any questions/comments or updates, despite them being requested. He is currently traveling around visiting SPI’s various forestry locations and mills, so is difficult to reach. In working towards the commercialization strategy, during the month of July, further research was completed on understanding and evaluating the availability and potential availability of fire clearing forestry residue in California. In July, a meeting with Stephen Kaffka and Rob Williams who are both authors of the report “An Assessment of Biomass Resource in California, 2013” was attended. These individuals provided us with guidance and information about how to identify the availability and potential availability of forestry/wood resource biomass in California. Also, in the month of July, a meeting with Cal-Fire was attended in order to understand what Cal-Fire plans to do in terms of reducing the risk of wildfires and how much potential fire clearing forestry residue biomass this will produce for California. Additionally, the potential of a novel pathway of producing H2 from pyrolysis oil, maximizing the products’ value, as well as maximizing the carbon emission reduction potential by incorporating carbon capture onsite, was investigated. We continued with the process of subcontracting with Iowa State University and Frontline BioEnergy. We have our Contract Administrators working with their counterparts at each partner to get the details in place. Draft contracts with statements of work were provided to each partner, and updated schedules and budgets, broken down by task in the statements of work, have been requested from each.

09 BIOMASS FUELS↗

Potential Impacts of Accelerated Climate Change (4th Annual Report)

Pacific Northwest National Laboratory (PNNL) has completed the fourth year draft Annual Letter Report that summarizes i) NRC needs for climate and hydrologic information, ii) recent research into climate and hydrologic changes that may affect nuclear power plants; iii) recent reports by federal agencies, as well as national and international organizations tasked with climate change research and developing policy with respect to climate change and mitigation; and iv) trends and advances in accommodating required climate change estimates in site specific evaluations. The Northeast U.S., a region defined by the Forth National Climate Assessment is the focus of this report. The NRC COR will review and provide comments on this draft within four weeks.

54 ENVIRONMENTAL SCIENCES↗

Work Plan for the Site-wide SSHAC Level 3 Probabilistic Seismic Hazard Analysis at INL

This work plan provides the overall framework, key activities, key tasks, and schedule for the execution of a probabilistic seismic hazard analysis at Idaho National Laboratory (INL). The probabilistic seismic hazard analysis will follow processes and procedures appropriate for the Senior Seismic Hazard Analysis Committee (SSHAC) Level 3 study provided in U. S. Nuclear Regulatory Commission guidance, NUREG-2213. The SSHAC Level 3 probabilistic seismic hazard analysis (PSHA) is being conducted as an INL site-wide effort. The work plan was developed and revised by participants who will perform the SSHAC Level 3 PSHA. The work plan also includes the quality assurance requirements commensurate with American Society of Mechanical Engineers Nuclear Quality Assurance NQA 1 2008/2009 and 2011 Addendum for design nuclear facilities under the U.S. Department of Energy and U. S. Nuclear Regulatory Commission. The scope of the SSHAC Level 3 PSHA is designed to produce the mean-centered definition of the seismic hazard with the appropriate treatment of uncertainties supported by the associated technical justifications. The SSHAC Level 3 study will properly implement and completely document the activities of evaluation, integration, and documentation. The evaluation process will consider data, models, and methods proposed by the larger technical community that are relevant to the PSHA at INL. The integration process will build seismic-source and ground-motion characterization models that represent the center, body, and range of technically defensible interpretations, taking into consideration the outcomes of the evaluation process. Key tasks and activities—such as a project kickoff meeting, three workshops, four formal working meetings, and a briefing meeting with the Participatory Peer Review Panel—will occur for the seven-member technical integration teams to construct seismic-source and ground-motion-characterization models. Both preliminary and final hazard-input documents will be developed to perform sensitivity analyses and the final PSHA, respectively. The entire study will be thoroughly documented in draft and final reports. The Participatory Peer Review Panel will review the SSHAC Level 3 study from start to finish, including the draft and final INL Site-wide PSHA reports, so they can provide a closure letter documenting the study’s adherence to SSHAC processes and technical adequacy of the final products.

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗

Development of an Interactive Valuation Model for Distributed Energy Resource Value

The Oklahoma Secretary of Commerce & Tourism (OSCT) seeks to address perceived challenges and barriers to the deployment of distributed energy generation resources (DERs), including solar and other technologies, in the state of Oklahoma. The Scope of Work (SOW) outlines follow-on tasks related to the previous CRADA # CRD-18-762. The first task will finalize the Interactive Valuation Model Requirements Document, the final draft of which was provided in June 2018. The second task includes the building, validation, and finalization of the interactive valuation model for expressing distributed energy resource value based on user inputs to be completed by June 30, 2019. Training for how to prepare the data inputs and use the model will also be provided. To address perceived challenges and barriers to the deployment of distributed energy generation resources (DERs), including solar and other technologies, in the state of Oklahoma, the work under this CRADA will: 1) finalize the draft Interactive Valuation Model Requirements Document delivered in June 2018; 2) finish building and validating the interactive valuation model for expressing DER value based on user inputs, and 3) provide training for use of this model.

14 SOLAR ENERGY↗

Distributed Energy Resource Cybersecurity Standards Development [Final Report]

Currently, the solar industry is operating with little application-specific guidance on how to protect and defend their systems from cyberattacks. This 3-year Department of Energy (DOE) Solar Energy Technologies Office-funded project helped advance the distributed energy resource (DER) cybersecurity state-of-the-art by (a) bolstering industry awareness of cybersecurity concepts, risks, and solutions through a webinar series and (b) developing recommendations for DER cybersecurity standards to improve the security performance of DER products and networks. Drafting DER standards is a lengthy, consensus-based process requiring effective leadership and stakeholder participation. This project was designed to reduce standard and guide writing times by creating well-researched recommendations that could act as a starting place for national and international standards development organizations. Working within the SunSpec/Sandia DER Cybersecurity Workgroup, the team produced guidance for DER cybersecurity certification, communication protocol standards, network architecture s, access control, and patching. The team also led subgroups within the IEEE P 1547.3 Guide for Cybersecurity of Distributed Energy Resources Interconnected with Electric Power Systems committee and pushed a draft to ballot in October 2021.

14 SOLAR ENERGY↗

Thermochemical characterization of intumescent materials and their application in FEM models using Aria

Intumescent materials are in wide use as protective coatings in fire protection or thermal management applications. These materials undergo chemical reactions occurring from approximately 300°C to 900°C, which outgas and expand the material, providing an appreciable increase in insulative performance. However, the complicated chemical mechanisms and large changes in materials properties complicate the incorporation of these materials into predictive thermal models. This document serves to outline the thermochemical characterization of select intumescent materials, the extraction of relevant parameters, and the incorporation of these parameters into the ChemEQ reaction model implemented in Aria. This work was performed in 2016 and documented in a draft SAND report in March 2017. In 2022, the draft SAND report was discovered and put through R&A.

36 MATERIALS SCIENCE↗

United States Nuclear Data Program: Work Plan for Fiscal Year 2023

The work plan described in this document has been developed to cover work to be performed by the U. S. Nuclear Data Program (USNDP) during Fiscal Year (FY) 2023 that begins on October 1, 2022. Previously, 23 work plans have been prepared for the nuclear data program covering FYs 2021-2022. This plan has been prepared in consultation with the members of the Coordinating Committee who represent the organizations participating in the program. Each Coordinating Committee member prepared a draft plan for his/her organization. Each contribution was integrated into a unified work plan. The draft plan was then circulated to the Coordinating Committee for comments and corrections before the final document was submitted to the U.S. Department of Energy (DOE). As was done in previous years, the tasks proposed by the various organizations were reviewed internally according to the following criteria, which were developed considering the mission and goals outlined in past review panel reports and oversight committee discussions, and in consultation with the DOE program manager.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

United States Nuclear Data Program Work Plan for FY 24

The work plan described in this document has been developed to cover work to be performed by the U. S. Nuclear Data Program (USNDP) during Fiscal Year (FY) 2024 that begins on October 1, 2022. Previously, 23 work plans have been prepared for the nuclear data program covering FYs 2021-2022. This plan has been prepared in consultation with the members of the Coordinating Committee who represent the organizations participating in the program. Each Coordinating Committee member prepared a draft plan for his/her organization. Each contribution was integrated into a unified work plan. The draft plan was then circulated to the Coordinating Committee for comments and corrections before the final document was submitted to the U.S. Department of Energy (DOE).

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Joint Comments from the Department of Energy, National Nuclear Security Administration (DOE NNSA) Los Alamos Field Office and Triad National Security, LLC on the U.S. Environmental Protection Agency’s New Mexico State-Wide Municipal Separate Storm Sewer System Strawman General Permit

In December 2020 and March 2021, EPA issued two MS4 strawman permit drafts specific to the Los Alamos area. EPA made text changes in the 2 nd strawman permit based on stakeholder comments related to the initial draft. During the public meeting on the Los Alamos area designation decision held on February 13, 2024, EPA staff stated that comments from the past strawman permits would be incorporated into the new MS4 permit to be issued state-wide. However, it does not appear that any of the text changes from the 2 nd Los Alamos area strawman permit were included in this state-wide general MS4 strawman permit. For reference, the 2 nd Los Alamos area revised strawman permit is included with these comments as Attachment 2. Many of the following comments refer to or state EPA’s updated text included in the 2 nd Los Alamos area strawman permit. The updated text from this 2 nd strawman permit that are referenced in the following comments should be applicable state-wide and it is suggested that this past work be reconsidered and incorporated.

54 ENVIRONMENTAL SCIENCES↗