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At least 469 records · Page 26

Training Population Optimization for Genomic Selection in Miscanthus

Miscanthus is a perennial grass with potential for lignocellulosic ethanol production. To ensure its utility for this purpose, breeding efforts should focus on increasing genetic diversity of the nothospecies Miscanthus × giganteus (M×g) beyond the single clone used in many programs. Germplasm from the corresponding parental species M. sinensis (Msi) and M. sacchariflorus (Msa) could theoretically be used as training sets for genomic prediction of M×g clones with optimal genomic estimated breeding values for biofuel traits. To this end, we first showed that subpopulation structure makes a substantial contribution to the genomic selection (GS) prediction accuracies within a 538-member diversity panel of predominately Msi individuals and a 598-member diversity panels of Msa individuals. We then assessed the ability of these two diversity panels to train GS models that predict breeding values in an interspecific diploid 216-member M×g F2 panel. Low and negative prediction accuracies were observed when various subsets of the two diversity panels were used to train these GS models. To overcome the drawback of having only one interspecific M×g F2 panel available, we also evaluated prediction accuracies for traits simulated in 50 simulated interspecific M×g F2 panels derived from different sets of Msi and diploid Msa parents. The results revealed that genetic architectures with common causal mutations across Msi and Msa yielded the highest prediction accuracies. Ultimately, these results suggest that the ideal training set should contain the same causal mutations segregating within interspecific M×g populations, and thus efforts should be undertaken to ensure that individuals in the training and validation sets are as closely related as possible.

59 BASIC BIOLOGICAL SCIENCES↗

Direct HCN synthesis via plasma-assisted conversion of methane and nitrogen

Hydrogen cyanide (HCN) is synthesized from ammonia (NH 3 ) and methane (CH 4 ) at ~1200°C over a Pt catalyst. Ammonia synthesis entails several complex, highly emitting processes. Plasma-assisted HCN synthesis directly from CH 4 and nitrogen (N 2 ) could be pivotal for on-demand HCN production. Here, we evaluate the potential of dielectric barrier discharge (DBD) N 2 /CH 4 plasma for decentralized catalyst-free selective HCN production. We demonstrate a single-step conversion of methane and nitrogen to HCN with a 72% yield at <300°C. HCN is favored at low CH 4 concentrations with ethane (C 2 H 6 ) as the secondary product. We propose a first-principles microkinetic model with few electron impact reactions. The model accurately predicts primary product yields and elucidates that methyl radical (·CH 3 ) is a common intermediate in HCN and C 2 H 6 synthesis. Compared to current industrial processes, N 2 /CH 4 DBD plasma can achieve minimal CO 2 emissions.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

On fracture of fibrous composites

The problem of an existing through-the-thickness center notch in a unidirectional fibrous composite is investigated using a homogeneous anisotropic elasticity analysis in conjunction with various crack growth criteria. Tensor polynomial, strain energy density, and normal stress ratio criteria are applied as crack growth direction criteria and compared to experimental observations. For the cases and criteria studied, only the normal stress ratio criterion exhibits an ability to correctly predict crack growth direction. The normal stress ratio criterion is subsequently applied to the same cases as a failure criterion. Comparison with experiment indicates that these predictions exhibit reasonable correlation with observed critical stresses. Finally, the macroscopic approach to the problem used in this study is compared to a microscopic shear lag analysis of experimental results in the literature. The comparison indicates that both approaches yield essentially identical predictions. The comparisons made with other criteria and approaches indicate that application of the normal stress ratio within a macroscopic level analysis has great potential as an approach to modeling composite crack growth.

Beuth, J. L., Jr.↗

Structural stability of thin overhanging walls during material extrusion additive manufacturing of thermoset-based ink

Recent developments have enabled material extrusion additive manufacturing of thermoset-based composite inks on the large scale. In addition, printing out-of-plane components is of broad interest to the polymer material extrusion community. Here, we address some of the challenges associated with both large-scale and out-of-plane thermoset material extrusion additive manufacturing by studying the height at which thin overhanging walls collapse. Walls at a range of overhang angles were printed until they collapsed. An optical camera captured the profile of each wall throughout the print, allowing the collapse height to be identified and the geometric fidelity to the programmed angle to be evaluated. Using previously measured rheological properties, predictive models were generated to approximate the collapse height and profile of the deflected walls. First, an analytical model was created to predict the height at which the walls would yield. The analytical model assumes the walls exhibit a perfectly linear profile; however, experiments proved this assumption to be false. Therefore, a finite element simulation was developed to account for the elastic deflection that occurs during printing. The finite element simulation predicts both the yield height and the deflected profile after the deposition of each layer. For the properties of the thermoset ink used here, the yield height predicted by the analytical model and finite element simulation are virtually identical. These predictions match experimental data reasonably well, but minor errors are observed. Accounting for the fully plastic moment appears to explain the small mismatch between experimental data and predictions. Additionally, the finite element simulation provides an excellent prediction of the deflected profile before the wall begins to collapse. Finally, by demonstrating that the collapse height and deflected profile of thin overhanging walls can be predicted, this work illustrates how the soft viscoelastic properties of thermoset-based composite inks limit the scale of a key feature required to print some nonplanar components. It also provides a basis to tailor in-process curing systems to suppress deflection and collapse of thin overhanging walls.

36 MATERIALS SCIENCE↗

Modeling Yield, Biogenic Emissions, and Carbon Sequestration in Southeastern Cropping Systems With Winter Carinata

Sustainable aviation fuel (SAF) production from lipids is a technologically mature approach for replacing conventional fossil fuel use in the aviation sector, and there is increasing demand for such feedstocks. The oilseed Brassica carinata (known as Ethiopian mustard or simply carinata) is a promising SAF feedstock that can be grown as a supplemental cash crop over the winter fallow season of various annual crop rotations in the Southeast US, avoiding land use changes and potentially achieving some of the soil carbon sequestration and ecosystem service benefits of winter cover crops. However, carinata may require more intensive management than traditional cover crops, potentially leading to additional soil greenhouse gas (GHG) emissions through increased carbon losses from soil tillage and nitrous oxide (N 2 O) emissions from nitrogen fertilizer application. In this work, the 2017 version of the process-based DayCent ecosystem model was used to establish initial expectations for the total regional SAF production potential and associated soil GHG emissions when carinata is integrated as a winter crop into the existing crop rotations across its current suitability range in southern Alabama, southern Georgia, and northern Florida. Using data from academic and industry carinata field trials in the region, DayCent was calibrated to reproduce carinata yield, nitrogen response, harvest index, and biomass carbon-to-nitrogen ratio. The resulting model was then used to simulate the integration of carinata every third winter across all 2.1 Mha of actively cultivated cropland in the study area. The model predicted regional average yields of 2.9–3.0 Mg carinata seed per hectare depending on crop management assumptions. That results in the production of more than two million Mg of carinata seed annually across the study area, enough to supply approximately one billion liters of SAF. Conventional management of carinata led to only modest increases in soil carbon storage that were largely offset by additional N2O emissions. Climate-smart management via adopting no-till carinata establishment or using poultry litter as a nitrogen source resulted in a substantial net soil GHG sink (0.23–0.31 Mg CO 2 e ha -1 y -1 , or 0.24–0.32 Mg CO2e per Mg of seed produced) at the farms where carinata is cultivated.

54 ENVIRONMENTAL SCIENCES↗

Blending and cavern formation within non-Newtonian fluids in stirred tanks: Application to nuclear waste fluid processing

A numerical approach for predicting the time-accurate fluid flow and mixing properties of non-Newtonian fluids is presented. This approach, which is based on the lattice Boltzmann method, is used to characterize the blending in shear-thinning fluids, as well as cavern formation in yield-stress fluids. Predictions compare favorably to measured data and expectations from first-principles theory. Importantly, across the range of fluids and systems here, the simulations require no reparameterization or retuning between scenarios. This generality is exploited to model a nuclear waste processing unit operation.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

Turbulent separated flow past a backward-facing step: A critical evaluation of two-equation turbulence models

The ability of two-equation models to accurately predict separated flows is analyzed from a combined theoretical and computational standpoint. Turbulent flow past a backward facing step is chosen as a test case in an effort to resolve the variety of conflicting results that were published during the past decade concerning the performance of two-equation models. It is found that the errors in the reported predictions of the k-epsilon model have two major origins: (1) numerical problems arising from inadequate resolution, and (2) inaccurate predictions for normal Reynolds stress differences arising from the use of an isotropic eddy viscosity. Inadequacies in near wall modelling play a substantially smaller role. Detailed calculations are presented which strongly indicate the standard k-epsilon model - when modified with an independently calibrated anisotropic eddy viscosity - can yield surprisingly good predictions for the backstep problem.

Thangam, S.↗

Turbulent flow past a backward-facing step - A critical evaluation of two-equation models

The ability of two-equation models to accurately predict separated flows is analyzed from a combined theoretical and computational standpoint. Turbulent flow past a backward facing step is chosen as a test case in an effort to resolve the variety of conflicting results that were published during the past decade concerning the performance of two-equation models. It is found that the errors in the reported predictions of the k-epsilon model have two major origins: (1) numerical problems arising from inadequate resolution, and (2) inaccurate predictions for normal Reynolds stress differences arising from the use of an isotropic eddy viscosity. Inadequacies in near wall modelling play a substantially smaller role. Detailed calculations are presented which strongly indicate the standard k-epsilon model - when modified with an independently calibrated anisotropic eddy viscosity - can yield surprisingly good predictions for the backstep problem.

Thangam, S.↗

Coolant pressure and airflow distribution in a strut-supported transpiration-cooled vane for a gas turbine engine

An analysis to predict pressure and flow distribution in a strut-supported wire-cloth vane was developed. Results were compared with experimental data obtained from room-temperature airflow tests conducted over a range of vane inlet airflow rates from 10.7 to 40.4 g/sec (0.0235 to 0.0890 lb/sec). The analytical method yielded reasonably accurate predictions of vane coolant flow rate and pressure distribution.

Kaufman, A.↗

Cosmic Supernova Neutrino and Gamma-Ray Backgrounds in the MeV Regime

Cosmic multimessenger backgrounds include relic diffuse components created in the early universe and contributions from individual sources. Here, we study both type Ia supernovae (SNe Ia) and core-collapse supernovae (CCSNe) contributions to the diffuse neutrino and gamma-ray backgrounds in the MeV regime referred to as DSNB and DSGB respectively. We show that the diffuse SN Ia background is 10 6 times lower (for $\overline{v}_e$) than the CCSN background making it negligible. Our predicted DSNB $\overline{v}_e$ flux at earth in the 19.3–32 MeV regime is 0.36 ν cm -2 s -1 . We also find that the DSNB flux in the energy range from 11.3 to 32 MeV varies by +29% with a change in the SFRD model from Madau & Fragos which yielded a minimum predicted flux, to the extragalactic background light reconstruction model (maximum predicted flux). The diffuse SN Ia gamma-ray background and its dependence on the progenitor supernova delay time distribution are also evaluated. Furthermore, we address the origin of the CGB (Cosmic Gamma-ray Background) in the 0.1–7 MeV regime by adding contributions from sources such as SNe Ia, CCSNe, radio-quiet Active Galactic Nuclei, Flat spectrum radio quasars (FSRQs) and Neutron star—neutron star mergers. We find that our modeled background (including uncertainties) matches the observed CGB above 1.0 MeV, but is a factor ≈2 lower than the observed flux in the 0.1–1.0 MeV range, highlighting the need for future MeV missions to establish the CGB spectrum more reliably, and to possibly identify additional sources or even source classes in the underexplored MeV band.

79 ASTRONOMY AND ASTROPHYSICS↗

A model for interphase chromosomes and evaluation of radiation-induced aberrations

We have developed a theoretical model for evaluating radiation-induced chromosomal exchanges by explicitly taking into account interphase (G(0)/G(1)) chromosome structure, nuclear organization of chromosomes, the production of double-strand breaks (DSBs), and the subsequent rejoinings in a faithful or unfaithful manner. Each of the 46 chromosomes for human lymphocytes (40 chromosomes for mouse lymphocytes) is modeled as a random polymer inside a spherical volume. The chromosome spheres are packed randomly inside a spherical nucleus with an allowed overlap controlled by a parameter Omega. The rejoining of DSBs is determined by a Monte Carlo procedure using a Gaussian proximity function with an interaction range parameter sigma. Values of Omega and sigma have been found which yield calculated results of interchromosomal aberration frequencies that agree with a wide range of experimental data. Our preferred solution is one with an interaction range of 0.5 microm coupled with a relatively small overlap parameter of 0.675 microm, which more or less confirms previous estimates. We have used our model with these parameter values and with resolution or detectability limits to calculate yields of translocations and dicentrics for human lymphocytes exposed to low-LET radiation that agree with experiments in the dose range 0.09 to 4 Gy. Five different experimental data sets have been compared with the theoretical results. Essentially all of the experimental data fall between theoretical curves corresponding to resolution limits of 1 Mbp and 20 Mbp, which may reflect the fact that different investigators use different limits for sensitivity or detectability. Translocation yields for mouse lymphocytes have also been calculated and are in good agreement with experimental data from 1 cGy to 10 cGy. There is also good agreement with recent data on complex aberrations. Our model is expected to be applicable to both low- and high-LET radiation, and we include a sample prediction of the yield of interchromosomal rejoining in the dose range 0.22 Gy to 2 Gy of 1000 MeV/nucleon iron particles. This dose range corresponds to average particle traversals per nucleus ranging from 1.0 to 9.12.

Non-NASA Center↗

Simulations of DSB Yields and Radiation-induced Chromosomal Aberrations in Human Cells Based on the Stochastic Track Structure Induced by HZE Particles

The formation of double‐strand breaks (DSBs) and chromosomal aberrations (CAs) is of great importance in radiation research and, specifically, in space applications. We are presenting a new particle track and DNA damage model, in which the particle stochastic track structure is combined with the random walk (RW) structure of chromosomes in a cell nucleus. The motivation for this effort stems from the fact that the model with the RW chromosomes, NASARTI (NASA radiation track image) previously relied on amorphous track structure, while the stochastic track structure model RITRACKS (Relativistic Ion Tracks) was focused on more microscopic targets than the entire genome. We have combined chromosomes simulated by RWs with stochastic track structure, which uses nanoscopic dose calculations performed with the Monte‐Carlo simulation by RITRACKS in a voxelized space. The new simulations produce the number of DSBs as function of dose and particle fluence for high‐energy particles, including iron, carbon and protons, using voxels of 20 nm dimension. The combined model also calculates yields of radiation‐induced CAs and unrejoined chromosome breaks in normal and repair deficient cells. The joined computational model is calibrated using the relative frequencies and distributions of chromosomal aberrations reported in the literature. The model considers fractionated deposition of energy to approximate dose rates of the space flight environment. The joined model also predicts of the yields and sizes of translocations, dicentrics, rings, and more complex‐type aberrations formed in the G0/G1 cell cycle phase during the first cell division after irradiation. We found that the main advantage of the joined model is our ability to simulate small doses: 0.05‐0.5 Gy. At such low doses, the stochastic track structure proved to be indispensable, as the action of individual delta‐rays becomes more important.

Ponomarev, Artem↗

Simulations of DSB Yields and Radiation-induced Chromosomal Aberrations in Human Cells Based on the Stochastic Track Structure iIduced by HZE Particles

The formation of double‐strand breaks (DSBs) and chromosomal aberrations (CAs) is of great importance in radiation research and, specifically, in space applications. We are presenting a new particle track and DNA damage model, in which the particle stochastic track structure is combined with the random walk (RW) structure of chromosomes in a cell nucleus. The motivation for this effort stems from the fact that the model with the RW chromosomes, NASARTI (NASA radiation track image) previously relied on amorphous track structure, while the stochastic track structure model RITRACKS (Relativistic Ion Tracks) was focused on more microscopic targets than the entire genome. We have combined chromosomes simulated by RWs with stochastic track structure, which uses nanoscopic dose calculations performed with the Monte‐Carlo simulation by RITRACKS in a voxelized space. The new simulations produce the number of DSBs as function of dose and particle fluence for high‐energy particles, including iron, carbon and protons, using voxels of 20 nm dimension. The combined model also calculates yields of radiation‐induced CAs and unrejoined chromosome breaks in normal and repair deficient cells. The joined computational model is calibrated using the relative frequencies and distributions of chromosomal aberrations reported in the literature. The model considers fractionated deposition of energy to approximate dose rates of the space flight environment. The joined model also predicts of the yields and sizes of translocations, dicentrics, rings, and more complex‐type aberrations formed in the G0/G1 cell cycle phase during the first cell division after irradiation. We found that the main advantage of the joined model is our ability to simulate small doses: 0.05‐0.5 Gy. At such low doses, the stochastic track structure proved to be indispensable, as the action of individual delta‐rays becomes more important.

Ponomarev, Artem↗

Simulation of DNA Damage in Human Cells from Space Radiation Using a Physical Model of Stochastic Particle Tracks and Chromosomes

The formation of double-strand breaks (DSBs) and chromosomal aberrations (CAs) is of great importance in radiation research and, specifically, in space applications. We are presenting a recently developed model, in which chromosomes simulated by NASARTI (NASA Radiation Tracks Image) is combined with nanoscopic dose calculations performed with the Monte-Carlo simulation by RITRACKS (Relativistic Ion Tracks) in a voxelized space. The model produces the number of DSBs, as a function of dose for high-energy iron, oxygen, and carbon ions, and He ions. The combined model calculates yields of radiation-induced CAs and unrejoined chromosome breaks in normal and repair deficient cells. The merged computational model is calibrated using the relative frequencies and distributions of chromosomal aberrations reported in the literature. The model considers fractionated deposition of energy to approximate dose rates of the space flight environment. The merged model also predicts of the yields and sizes of translocations, dicentrics, rings, and more complex-type aberrations formed in the G0/G1 cell cycle phase during the first cell division after irradiation.

Ponomarev, Artem↗

On the prediction of free turbulent jets with swirl using a quadratic pressure-strain model

Data from free turbulent jets both with and without swirl are used to assess the performance of the pressure-strain model of Speziale, Sarkar and Gatski which is quadratic in the Reynolds stresses. Comparative predictions are also obtained with the two versions of the Launder, Reece and Rodi model which are linear in the same terms. All models are used as part of a complete second-order closure based on the solution of differential transport equations for each non-zero component of the Reynolds stress tensor together with an equation for the scalar energy dissipation rate. For non-swirling jets, the quadratic model underestimates the measured spreading rate of the plane jet but yields a better prediction for the axisymmetric case without resolving the plane jet/round jet anomaly. For the swirling axisymmetric jet, the same model accurately reproduces the effects of swirl on both the mean flow and the turbulence structure in sharp contrast with the linear models which yield results that are in serious error. The reasons for these differences are discussed.

Younis, Bassam A.↗

Implementation of tritium transport in a gas-liquid contactor CFD simulation of tritium extraction from lead-lithium in ANSYS fluent

Modifications to the Computational Fluid Dynamic (CFD) software ANSYS Fluent were done to quantify and characterize tritium transport in Gas-Liquid Contactors (GLCs). A double-slit, Ergun-like equation was employed for the porous media model, with Ergun coefficients validated with Sulzer’s Sulcol software. Tritium transport from PbLi within the GLC was verified against analytical models. The geometry of the CFD model was based on the MELODIE GLC experiment. The hydrodynamic CFD pressure drop results align well with SulCol estimations and fall between the predictions of the analytical Delft-Olujic and Billet & Schultes models. In terms of mass transfer efficiency, traditional mass transfer models showed a significant deviation from experimental results when using varying values of H solubility in PbLi. A saturation phenomenon occurred when utilizing high solubility values for hydrogen in PbLi. In conclusion, a modified film theory mass transfer coefficient, incorporating either the Delft-Olujic or Billet & Schultes wettability model, yielded CFD-predicted extraction efficiencies that closely matched experimental measurements.

70 - PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Performance and transport in the ARC tokamak

The ARC TM tokamak, a high-field (𝐵 𝑇 = 11.4 T) fusion power plant, under development by Commonwealth Fusion Systems, is studied using a suite of integrated modelling tools to predict its fusion power generation (𝑃𝑓⁡𝑢⁢𝑠), transport and confinement properties. Analysis is based off an ARC operational point scoped first with zero-dimensional (0-D) plasma operational contour (POPCON) modelling to produce 1.13 GW of fusion power. A suite of integrated modelling tools (TRANSP, ASTRA and TORAX) were applied to predict the performance and kinetic profiles of the ARC design point, yielding a range of predicted performance spanning from ∼900 to 1300 MW in rough quantitative agreement with POPCON predictions. The sensitivity of these results to uncertain modelling inputs was probed using scans of pedestal boundary conditions around EPED-predicted values (total pressure and temperature ratios), tungsten concentration and seperatrix density around their nominal assumptions. Pedestal pressure and pedestal top (𝑇 𝑖 /𝑇 𝑒 ) play a large role in 1.5-dimensional performance predictions, able to modify the predicted 𝑃 𝑓⁡𝑢⁢𝑠 by a factor of 2 within reasonable assumptions. High-fidelity core nonlinear gyrokinetic profile predictions, performed using CGYRO (Candy et al. 2016 J. Comput. Phys., vol. 324, pp. 73–93) coupled with the PORTALS (Rodriguez-Fernandez et al. 2024 Nucl. Fusion, vol. 64, 076034; Phys. Plasmas, vol. 31, 2024, 062501) framework, yield substantially lower performance (𝑃 𝑓⁡𝑢⁢𝑠 =677 MW) compared with 0-D and medium-fidelity modelling for nominal assumptions, showing that there is non-negligible uncertainty between models and that future work on SPARC may help resolve discrepancies. Lower overall performance results from significantly reduced volume-averaged densities and temperatures, along with reduced levels of density and temperature peaking. Turbulence and transport are largely dominated by ion temperature gradient across the profile, confirmed by both linear stability and the response of the nonlinear fluxes to changes in gradients, with some impact of kinetic ballooning modes in the deep core. This work represents one of the most complete scoping of potential fusion power plant conditions performed to date. The extensive integrated modelling provides confidence in ARC performance approaching 1 GW, while nonlinear gyrokinetic modelling results in open questions into the physics of density and temperature peaking in fusion-power-plant-relevant operational space. A discussion of results and the role that the SPARC tokamak (Creely et al. 2020 J. Plasma Phys., vol. 86, 865860502) will play in informing ARC design, performance and operation is presented.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Scaling High-Resolution Soil Organic Matter Composition to Improve Predictions of Potential Soil Respiration Across the Continental United States

Despite the importance of microbial soil organic matter (SOM) respiration in regulating the flux of carbon between soils and the atmosphere, soil carbon cycling models remain primarily based on climate and soil properties, leading to large uncertainty in predictions. To address this knowledge gap, we analyzed high-resolution water-extractable SOM profiles from soil cores collected across the United States by the 1,000 Soils Pilot of the Molecular Observation Network. Our innovation lies in using machine learning to distill thousands of SOM formula into tractable units; and it enables integrating data from molecular measurements into soil respiration models. In surface soils, SOM chemistry provided better estimates of potential soil respiration than soil physicochemistry, and using them combined yielded the best prediction. Overall, we identify specific subsets of organic molecules that may improve predictions of global soil respiration and create a strong basis for developing new representations in process-based models.

54 ENVIRONMENTAL SCIENCES↗