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At least 469 records · Page 26

Extended live-tracking and quantitative characterization of wound healing and cell migration with SiR-Hoechst

Highlights: • SiR-Hoechst is a nuclear dye that enables cell tracking without affecting migration. • Single cell analysis provides multiple migration metrics during wound healing. • Cell density-based report of wound healing is less susceptible to subjective bias. • Cell directionality is an important contributor of early wound recovery. Cell migration is essential to many life processes, including immune response, tissue repair, and cancer progression. A reliable quantitative characterization of the cell migration can therefore aid in the high throughput screening of drug efficacy in wound healing and cancer treatments. In this work, we report what we believe is the first use of SiR-Hoechst for extended live tracking and automated analysis of cell migration and wound healing. We showed through rigorous statistical comparisons that this far-red label does not affect migratory behavior. We observed excellent automated tracking of random cell migration, in which the motility parameters (speed, displacement, path length, directionality ratio, persistence time, and direction autocorrelation) obtained closely match those obtained from manual tracking. We also present an analysis framework to characterize the healing of a scratch wound from the perspective of single cells. The use of SiR-Hoechst is advantageous for the crowded environments in wound healing assays because as long as cell nuclei do not overlap, continuous tracking can be maintained even if there is cell-cell contact. In this paper, we report wound recovery based on the number of cells migrating into the wound over time, normalized by the initial cell count prior to the infliction of the wound. This normalized cell count approach is impervious to operator bias during the arbitration of wound edges and is also robust against variability that arises due to differences in the cell density of different samples. Additional wound healing characteristics were also defined based on the evolution of cell speed and directionality during healing. Not unexpected, the wound healing cells exhibited much higher tendency to maintain the same migratory direction in comparison to the randomly migrating cells. The use of SiR-Hoechst thus greatly simplified the automation of single cell and whole population analysis with high spatial and temporal resolution over extended periods of time.

60 APPLIED LIFE SCIENCES↗

Unveiling Swift Heavy Ion Track Morphology in Sr-Based High-Entropy Perovskites

The incorporation of multiple cations on a single lattice site in the high-entropy oxides is considered the key driving factor for modifying the known atomic-level response to energetic ion irradiation due to the presence of structural disorder; however, these effects are not well-understood yet. In this work, we present atomic-level insight into irradiation-induced nanoscale phase transformations in a perovskite-structured high-entropy oxide, Sr(Zr 0.2 Sn 0.2 Ti 0.2 Hf 0.2 Nb 0.2 )O 3 (Sr(HE)O 3 ), subjected to 774 MeV swift Xe heavy ions, where damage is dominated by inelastic ion−lattice interactions. While these ions generally are known to create nanoscale disordered channels, “ion tracks”, along the penetration direction in the material, this study shows the formation of discontinuous and partially recrystallized ion tracks in Sr(HE)O 3 . Compared to SrTiO 3 irradiated under identical energy loss conditions, the ion tracks in Sr(HE)O 3 exhibit significantly reduced diameters and a markedly different interfacial structure. Notably, the crystalline−amorphous interface in Sr(HE)O 3 shows minimal lattice distortion, confined to approximately 2−3 monolayers, in contrast to the extended disordered shell commonly observed in SrTiO 3 . Using in situ atomic-resolution electron microscopy, we further demonstrate that the amorphous/disordered regions within Sr(HE)O 3 ion tracks remain highly stable under electron irradiation, whereas tracks in SrTiO 3 readily recrystallize. This enhanced stability is attributed to the dominance of structural and chemical complexity arising from multiple B-site cations, which suppress defect migration and templated recrystallization driven by electronic excitations and local heating. Overall, this study highlights how high-entropy oxide chemistry fundamentally reshapes irradiation damage evolution, offering insights into defect formation and phase stability under extreme conditions.

36 MATERIALS SCIENCE↗

Weakening of the Extratropical Storm Tracks in Solar Geoengineering Scenarios

Solar geoengineering that aims to offset global warming could nonetheless alter atmospheric temperature gradients and humidity and thus affect the extratropical storm tracks. Here, we first analyze climate model simulations from experiment G1 of the Geoengineering Model Intercomparison Project, in which a reduction in incoming solar radiation balances a quadrupling of CO 2 . The Northern Hemisphere extratropical storm track weakens by a comparable amount in G1 as it does for increased CO2 only. The Southern Hemisphere storm track also weakens in G1, in contrast to a strengthening and poleward shift for increased CO 2 . Using mean available potential energy, we show that the changes in zonal-mean temperature and humidity are sufficient to explain the different responses of storm-track intensity. We also demonstrate similar weakening in a more complex geoengineering scenario. Here, our results offer insight into how geoengineering affects storm tracks, highlighting the potential for geoengineering to induce novel climate changes.

54 ENVIRONMENTAL SCIENCES↗

Tracking single particle rotation: Probing dynamics in four dimensions

Direct visualization and tracking of small particles at high spatial and temporal resolution provides a powerful approach to probing complex dynamics and interactions in chemical and biological processes. Analysis of the rotational dynamics of particles adds a new dimension of information that is otherwise impossible to obtain with conventional 3-D particle tracking. In this review, we survey recent advances in single-particle rotational tracking, with highlights on the rotational tracking of optically anisotropic Janus particles. Furthermore, strengths and weaknesses of the various particle tracking methods, and their applications are discussed.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Parallelized Kalman-Filter-Based Reconstruction of Particle Tracks on Many-Core Processors and GPUs

For over a decade now, physical and energy constraints have limited clock speed improvements in commodity microprocessors. Instead, chipmakers have been pushed into producing lower-power, multi-core processors such as Graphical Processing Units (GPU), ARM CPUs, and Intel MICs. Broad-based efforts from manufacturers and developers have been devoted to making these processors user-friendly enough to perform general computations. However, extracting performance from a larger number of cores, as well as specialized vector or SIMD units, requires special care in algorithm design and code optimization. One of the most computationally challenging problems in high-energy particle experiments is finding and fitting the charged-particle tracks during event reconstruction. This is expected to become by far the dominant problem at the High-Luminosity Large Hadron Collider (HL-LHC), for example. Today the most common track finding methods are those based on the Kalman filter. Experience with Kalman techniques on real tracking detector systems has shown that they are robust and provide high physics performance. This is why they are currently in use at the LHC, both in the trigger and offine. Previously we reported on the significant parallel speedups that resulted from our investigations to adapt Kalman filters to track fitting and track building on Intel Xeon and Xeon Phi. Here, we discuss our progresses toward the understanding of these processors and the new developments to port the Kalman filter to NVIDIA GPUs.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Tracking shocked dust: State estimation for a complex plasma during a shock wave

We consider a two-dimensional complex (dusty) plasma crystal excited by an electrostatically-induced shock wave. Dust particle kinematics in such a system are usually determined using particle tracking velocimetry. In this work we present a particle tracking algorithm which determines the dust particle kinematics with significantly higher accuracy than particle tracking velocimetry. The algorithm uses multiple extended Kalman filters to estimate the particle states and an interacting multiple model to assign probabilities to the different filters. This enables the determination of relevant physical properties of the dust, such as kinetic energy and kinetic temperature, with high precision. We use a Hugoniot shock-jump relation to calculate a pressure-volume diagram from the shocked dust kinematics. Calculation of the full pressure-volume diagram was possible with our tracking algorithm, but not with particle tracking velocimetry.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Local characterization of hindered Brownian motion by using digital video microscopy and 3D particle tracking

In this article we present methods for measuring hindered Brownian motion in the confinement of complex 3D geometries using digital video microscopy. Here we discuss essential features of automated 3D particle tracking as well as diffusion data analysis. By introducing local mean squared displacement-vs-time curves, we are able to simultaneously measure the spatial dependence of diffusion coefficients, tracking accuracies and drift velocities. Such local measurements allow a more detailed and appropriate description of strongly heterogeneous systems as opposed to global measurements. Finite size effects of the tracking region on measuring mean squared displacements are also discussed. The use of these methods was crucial for the measurement of the diffusive behavior of spherical polystyrene particles (505 nm diameter) in a microfluidic chip. The particles explored an array of parallel channels with different cross sections as well as the bulk reservoirs. For this experiment we present the measurement of local tracking accuracies in all three axial directions as well as the diffusivity parallel to the channel axis while we observed no significant flow but purely Brownian motion. Finally, the presented algorithm is suitable also for tracking of fluorescently labeled particles and particles driven by an external force, e.g., electrokinetic or dielectrophoretic forces.

74 ATOMIC AND MOLECULAR PHYSICS↗

SIZE AND DENSITY ESTIMATION FROM IMPACT TRACK MORPHOLOGY IN SILICA AEROGEL: APPLICATION TO DUST FROM COMET 81P/WILD 2

A large number of cometary dust particles were captured with low-density silica aerogel during the NASA Stardust mission. The dust particles penetrated into the aerogel and formed various track shapes. To estimate the properties of the dust particles, such as density and size, based on the morphology of the tracks, we carried out systematic experiments testing impacts into low-density aerogel at 6 km s{sup -1} using projectiles of various sizes and densities. We found that the maximum track diameter and the ratio of the track length to the maximum track diameter in aerogel are good indicators of projectile size and density, respectively. Based on these results, we estimated the size and density of individual dust particles from comet 81P/Wild 2. The average density of the 'fluffy' dust particles and the bulk density of all dust particles were obtained as 0.35 {+-} 0.07 and 0.49 {+-} 0.18 g cm{sup -3}, respectively. These statistical data provided the content of monolithic and coarse grains in the Stardust particles, {approx}30 wt%. Combining this result with some mid-infrared observational data, we found that the content of crystalline silicates is {approx}50 wt% or more of non-volatile material.

79 ASTRONOMY AND ASTROPHYSICS↗

Three-dimensional track reconstruction for directional Dark Matter detection

Directional detection of Dark Matter is a promising search strategy. However, to perform such detection, a given set of parameters has to be retrieved from the recoiling tracks: direction, sense and position in the detector volume. In order to optimize the track reconstruction and to fully exploit the data of forthcoming directional detectors, we present a likelihood method dedicated to 3D track reconstruction. This new analysis method is applied to the MIMAC detector. It requires a full simulation of track measurements in order to compare real tracks to simulated ones. We conclude that a good spatial resolution can be achieved, i.e. sub-mm in the anode plane and cm along the drift axis. This opens the possibility to perform a fiducialization of directional detectors. The angular resolution is shown to range between 20° to 80°, depending on the recoil energy, which is however enough to achieve a high significance discovery of Dark Matter. On the contrary, we show that sense recognition capability of directional detectors depends strongly on the recoil energy and the drift distance, with small efficiency values (50%–70%). We suggest not to consider this information either for exclusion or discovery of Dark Matter for recoils below 100 keV and then to focus on axial directional data.

79 ASTRONOMY AND ASTROPHYSICS↗

Test beam demonstration of silicon microstrip modules with transverse momentum discrimination for the future CMS tracking detector

A new CMS Tracker is under development for operation at the High Luminosity LHC from 2026 onwards. It includes an outer tracker based on dedicated modules that will reconstruct short track segments, called stubs, using spatially coincident clusters in two closely spaced silicon sensor layers. These modules allow the rejection of low transverse momentum track hits and reduce the data volume before transmission to the first level trigger. The inclusion of tracking information in the trigger decision is essential to limit the first level trigger accept rate. A customized front-end readout chip, the CMS Binary Chip (CBC), containing stub finding logic has been designed for this purpose. A prototype module, equipped with the CBC chip, has been constructed and operated for the first time in a 4 GeemVem/emc positron beam at DESY. The behaviour of the stub finding was studied for different angles of beam incidence on a module, which allows an estimate of the sensitivity to transverse momentum within the future CMS detector. A sharp transverse momentum threshold around 2 emVem/emc was demonstrated, which meets the requirement to reject a large fraction of low momentum tracks present in the LHC environment on-detector. This is the first realistic demonstration of a silicon tracking module that is able to select data, based on the particle's transverse momentum, for use in a first level trigger at the LHC . The results from this test are described here.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Muon track reconstruction in a segmented bolometric array using multi-objective optimization

Recent advances in segmented solid-state detector arrays for rare-event searches have allowed the technology to approach the ton-scale in detector mass and the scale of meters in size. Often focused around searches for neutrinoless double-beta decay or direct dark matter detection, such experiments also have the capability to search for exotic particles that leave track-like signatures across their volume. However, the segmented nature of such detector arrays often sets the spatial resolution and makes the problem of reconstructing track-like paths non-trivial. Here, in this paper, we present an algorithm that improves reconstruction of track-like events in segmented detectors using multi-objective optimization — a computational technique that optimizes more than one cost function at a time without specifying a quantitative weighting between them. Such a technique allows the reconstruction of tracks through a detector and the determination of path-lengths through individual elements. When combined with the reconstructed energy depositions in each element this allows for a calculation of the stopping power of track-like particles and opens the door to searches for particles with abnormal stopping power like monopoles or lightly-ionizing particles (LIPs). Results are presented which evaluate the precision of the reconstruction tools as they currently stand against Monte Carlo generated data. The algorithm is presented in the context of the CUORE experiment, but has applications to other segmented calorimeter detectors.

47 OTHER INSTRUMENTATION↗

Track reconstruction as a service for collider physics

Optimizing charged-particle track reconstruction algorithms is crucial for efficient event reconstruction in Large Hadron Collider (LHC) experiments due to their significant computational demands. Existing track reconstruction algorithms have been adapted to run on massively parallel coprocessors, such as graphics processing units (GPUs), to reduce processing time. Nevertheless, challenges remain in fully harnessing the computational capacity of coprocessors in a scalable and non-disruptive manner. This paper proposes an inference-as-a-service approach for particle tracking in high energy physics experiments. To evaluate the efficacy of this approach, two distinct tracking algorithms are tested: Patatrack, a rule-based algorithm, and Exa.TrkX, a machine learning-based algorithm. The as-a-service implementations show enhanced GPU utilization and can process requests from multiple CPU cores concurrently without increasing per-request latency. The impact of data transfer is minimal and insignificant compared to running on local coprocessors. This approach greatly improves the computational efficiency of charged particle tracking, providing a solution to the computing challenges anticipated in the High-Luminosity LHC era.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Description and Performance of Track and Primary-Vertex Reconstruction with the CMS Tracker

A description is provided of the software algorithms developed for the CMS tracker both for reconstructing charged-particle trajectories in proton-proton interactions and for using the resulting tracks to estimate the positions of the LHC luminous region and individual primary-interaction vertices. Despite the very hostile environment at the LHC, the performance obtained with these algorithms is found to be excellent. For tbar t events under typical 2011 pileup conditions, the average track-reconstruction efficiency for promptly-produced charged particles with transverse momenta of p(T) > 0.9GeV is 94% for pseudorapidities of |η| < 0.9 and 85% for 0.9 < |η| < 2.5. The inefficiency is caused mainly by hadrons that undergo nuclear interactions in the tracker material. For isolated muons, the corresponding efficiencies are essentially 100%. For isolated muons of p(T) = 100GeV emitted at |η| < 1.4, the resolutions are approximately 2.8% in p(T), and respectively, 10μm and 30μm in the transverse and longitudinal impact parameters. The position resolution achieved for reconstructed primary vertices that correspond to interesting pp collisions is 10–12μm in each of the three spatial dimensions. The tracking and vertexing software is fast and flexible, and easily adaptable to other functions, such as fast tracking for the trigger, or dedicated tracking for electrons that takes into account bremsstrahlung.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Quantum tracking control of the orientation of symmetric-top molecules

The goal of quantum tracking control is to identify shaped fields to steer observable expectation values along designated time-dependent tracks. The fields are determined via an iteration-free procedure, which is based on inverting the underlying dynamical equations governing the controlled observables. In this paper, we generalize the ideas in [Phys. Rev. A 98, 043429 (2018)] to the task of orienting symmetric top molecules in three dimensions. To this end, we derive equations for the control fields capable of directly tracking the expected value of the three-dimensional dipole orientation vector along a desired path in time. In conclusion, we show this framework can be utilized for tracking the orientation of linear molecules as well, and present numerical illustrations of these principles for symmetric-top tracking control problems.

74 ATOMIC AND MOLECULAR PHYSICS↗

Search for the jet-induced diffusion wake in the quark-gluon plasma via measurements of jet-track correlations in photon-jet events in Pb+Pb collisions at $\sqrt{s_{NN}}$ = 5.02 TeV with the ATLAS detector

This paper presents a measurement of jet-track correlations in photon-jet events, using 1.72 nb −1 of Pb+Pb data at $\sqrt{s_{NN}}$ = 5.02TeV recorded with the ATLAS detector at the LHC. Events with energetic photon-jet pairs are selected, where the photon and jet are approximately back-to-back in azimuth. The angular correlation between jets and charged-particle tracks with transverse momentum (𝑝 T ) in the range 0.5–2.0 GeV in the hemisphere opposite to the jet, |Δ⁢𝜙(jet,track)|>𝜋/2, is measured as a function of their relative pseudorapidity difference, |Δ⁢𝜂(jet,track)|. In central Pb+Pb collisions, these correlations are predicted to be sensitive to the diffusion wake in the quark-gluon plasma resulting from the lost energy of high-𝑝T partons traversing the plasma, with a characteristic modification as a function of |Δ⁢𝜂(jet,track)|. The correlations are examined with different selections on the jet-to-photon 𝑝 T ratio to select events with different degrees of energy loss. No diffusion wake signal is observed within the current sensitivity and upper limits at 95% confidence level on the diffusion wake amplitude are reported.

heavy flavor physics↗

Leading order track functions in a hot and dense QGP

We study the modifications to the fragmentation pattern of partons into charged particles in the presence of a hot and dense quark gluon plasma. To this end, we analyze the perturbative renormalization group equations of the track functions, which describe the energy fraction carried by charged hadrons. Focusing on pure Yang-Mills theory, we compute the lowest-order moments of the medium-modified track functions, which are found to be sensitive to the reduced phase space for emissions in the medium and to energy loss. We use the extracted moments to calculate the energy energy correlator (EEC) on tracks in the collinear limit. The EEC on medium-evolved tracks does not differ qualitatively from the EEC on vacuum tracks despite being sensitive to the color decoherence transition and suppressing the distribution due to quenching, as seen in other jet observables. Published by the American Physical Society 2024

Barata, João (ORCID:0000000342864555)↗

Target tracking via recursive Bayesian state estimation in radar networks

Modern cognitive radar networks incorporating intelligent and cognitive support-modules can actively adjust the radar-target geometry and optimally select a subset of radars to track the target of interest. Based on the theories of dynamic graphical models (DGM) and recursive Bayesian state estimation (RBSE), we propose a framework for single target tracking in mobile and cooperative radar networks, jointly considering path planning and radar selection. We formulate the tracking procedure as two iterative steps: (i) solving a combinatorial problem based on the expected cross-entropy measure to select the optimal subset of radars and their locations, and (ii) tracking the target using RBSE technique. We simulate the proposed framework using an illustrative example in 2-D space and demonstrate the tracking performance.

Xiang, Yijian↗

Iterative Learning Control for High-Speed Rosette Trajectory Tracking

We demonstrate high-speed tracking of a selfrepeating non-raster scan AFM pattern known as rosette. To generate this pattern, the lateral axes of the scanner trace a sum of two sinusoids with different frequencies but identical amplitudes. A feedback controller is combined with an iterative learning controller (ILC) to track this repetitive pattern. The feedback controller is designed based on the internal model principle and incorporates the fundamental reference frequencies. The ILC eliminates the repeating deterministic disturbances that appear in the tracking error. To verify the efficacy of the control approach, an experiment is conducted using a two degrees-of-freedom microelectromechanical system nanopositioner to track a rosette pattern sequentially at the rate= of five frames per second. The experimental results show that the root-mean-square value of tracking error has been reduced by more than 50% owing to the ILC

42 ENGINEERING↗