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At least 469 records · Page 26

Relating the radar backscattering coefficient to leaf-area index

The relationship between the radar backscattering coefficient of a vegetation canopy, sigma(0) sub can, and the canopy's leaf area index (LAI) is examined. The relationship is established through the development of a model for corn and sorghum and another for wheat. Both models are extensions of the cloud model of Attema and Ulaby (1978). Analysis of experimental data measured at 8.6, 13.0, 17.0, and 35.6 GHz indicates that most of the temporal variations of sigma(0) sub can can be accounted for through variations in green LAI alone, if the latter is greater than 0.5.

Ulaby, F. T.↗

Measurement and Modeling of the Optical Scattering Properties of Crop Canopies

Progress and results in the measurement and scattering properties of crop canopies was examined. The following accomplishments are reported: (1) analysis of inhouse polarization, Sun/view angle data set of wheat was completed; (2) polarization photometer instrument system was completed; (3) light polarization properties (measured with polarization photometer) of individual plant leaves initiated, and twenty two species/varieties were measured before frost; (4) light polarizing properties of both moisture-stressed corn leaves and diseased wheat leaves were measured; (5) Sun/view angle data and ancillary data were acquired on two wheat canopies on two dates and on one sorghum canopy on two adjacent days.

Vanderbilt, V. C.↗

Relating the microwave backscattering coefficient to leaf area index

This paper examines the relationship between the microwave backscattering coefficient of a vegetation canopy, sigma (can, 0) and the canopy's leaf area index (LAI). The relationship is established through the development of one model for corn and sorghum and another for wheat. Both models are extensions of the cloud model of Attema and Ulaby (1978). Analysis of experimental data measured at 8.6, 13.0, 17.0, and 35.6 GHz indicates that most of the temporal variations of sigma (can, 0) can be accounted for through variations in green LAI alone, if the latter is greater than 0.5.

Ulaby, F. T.↗

Active microwave responses - An aid in improved crop classification

A study determined the feasibility of using visible, infrared, and active microwave data to classify agricultural crops such as corn, sorghum, alfalfa, wheat stubble, millet, shortgrass pasture and bare soil. Visible through microwave data were collected by instruments on board the NASA C-130 aircraft over 40 agricultural fields near Guymon, OK in 1978 and Dalhart, TX in 1980. Results from stepwise and discriminant analysis techniques indicated 4.75 GHz, 1.6 GHz, and 0.4 GHz cross-polarized microwave frequencies were the microwave frequencies most sensitive to crop type differences. Inclusion of microwave data in visible and infrared classification models improved classification accuracy from 73 percent to 92 percent. Despite the results, further studies are needed during different growth stages to validate the visible, infrared, and active microwave responses to vegetation.

Rosenthal, W. D.↗

The microwave propagation and backscattering characteristics of vegetation

A semi-empirical model for microwave backscatter from vegetation was developed and a complete set of canope attenuation measurements as a function of frequency, incidence angle and polarization was acquired. The semi-empirical model was tested on corn and sorghum data over the 8 to 35 GHz range. The model generally provided an excellent fit to the data as measured by the correlation and rms error between observed and predicted data. The model also predicted reasonable values of canopy attenuation. The attenuation data was acquired over the 1.6 to 10.2 GHz range for the linear polarizations at approximately 20 deg and 50 deg incidence angles for wheat and soybeans. An attenuation model is proposed which provides reasonable agreement with the measured data.

Ulaby, F. T.↗

Evaluation of AIS Data for Agronomic and Rangeland Vegetation: Preliminary Results for August 1984 Flight over Nebraska Sandhills Agricultural Laboratory

Since 1978 scientists from the Center for Agricultural Meteorology and Climatology at the University of Nebraska have been conducting research at the Sandhills Agricultural Laboratory on the effects of water stress on crop growth, development and yield using remote sensing techniques. We have been working to develop techniques, both remote and ground-based, to monitor water stress, phenological development, leaf area, phytomass production and grain yields of corn, soybeans and sorghum. Because of the sandy soils and relatively low rainfall at the site it is an excellent location to study water stress without the necessity of installing expensive rainout shelters. The primary objectives of research with the airborne imaging spectrometer (AIS) data collected during an August 1984 flight over the Sandhills Agricultural Laboratory are to evaluate the potential of using AIS to: (1) discriminate crop type; (2) to detect subtle architectural differences that exist among different cultivars or hybrids of agronomic crops; (3) to detect and quantify, if possible, the level of water stress imposed on the crops; and (4) to evaluate leaf area and biomass differences for different crops.

Blad, B. L.↗

Characterization of vegetation by microwave and optical remote sensing

Two series of carefully controlled experiments were conducted. First, plots of important crops (corn, soybeans, and sorghum), prairie grasses (big bluestem, switchgrass, tal fescue, orchardgrass, bromegrass), and forage legumes (alfalfa, red clover, and crown vetch) were manipulated to produce wide ranges of phytomass, leaf area index, and canopy architecture. Second, coniferous forest canopies were simulated using small balsam fir trees grown in large pots of soil and arranged systematically on a large (5 m) platform. Rotating the platform produced many new canopies for frequency and spatial averaging of the backscatter signal. In both series of experiments, backscatter of 5.0 GHz (C-Band) was measured as a function of view angle and polarization. Biophysical measurements included leaf area index, fresh and dry phytomass, water content of canopy elements, canopy height, and soil roughness and moisture content. For a subset of the above plots, additional measurements were acquired to exercise microwave backscatter models. These measurements included size and shape of leaves, stems, and fruit and the probability density function of leaf and stem angles. The relationships of the backscattering coefficients and the biophysical properties of the canopies were evaluated using statistical correlations, analysis of variance, and regression analysis. Results from the corn density and balsam fir experiments are discussed and analyses of data from the other experiments are summarized.

Daughtry, C. S. T.↗

Overview and highlights of Early Warning and Crop Condition Assessment project

Work of the Early Warning and Crop Condition Assessment (EW/CCA) project, one of eight projects in the Agriculture and Resources Inventory Surveys Through Aerospace Remote Sensing (AgRISTARS), is reviewed. Its mission, to develop and test remote sensing techniques that enhance operational methodologies for crop condition assessment, was in response to initiatives issued by the Secretary of Agriculture. Meteorologically driven crop stress indicator models have been developed or modified for wheat, maize, grain sorghum, and soybeans. These models provide early warning alerts of potential or actual crop stresses due to water deficits, adverse temperatures, and water excess that could delay planting or harvesting operations. Recommendations are given for future research involving vegetative index numbers and the NOAA and Landsat satellites.

Boatwright, G. O.↗

Geometric basis for the far red shift

An alternative explanation is offered for the redshift (an abrupt change in the ratio of scattering to absorption in the radiance spectra of heading canopies of such crops as wheat and grain sorghum). The shift occurs abruptly at wavelengths near the red-infrared boundary towards the longer wavelengths. The new explanation, following that of Collins (1978) and Schutt et al. (1984), is based on one particular architectural change that occurs in any heading plant canopy. Specifically, the newly extended heads alter the interaction between light and the established foliage. The heads reduce the amount of sunlight striking the topmost leaves which are generally comparatively good specular reflectors. The heads also reduce the ability to observe the specularly reflecting leaves. The reduction in the amplitude of the radiance (due to decreased specularly reflected light) at heading appears to be a shift in the wavelength of the red edge. It is proposed that vertical (amplitude) shifts - due to changes in the amount of specularly reflected light as a function of heading - have been misinterpreted as horizontal (wavelength) shifts due in part to the characteristic shape of the radiance curve at the red edge.

Vanderbilt, V. C.↗

Ion-exchange chromatography separates activities synthesizing and degrading fructose 2,6-bisphosphate from C3 and C4 leaves but not from rat liver

Fructose-6-phosphate,2-kinase and fructose-2,6-bisphosphatase were separated on the basis of charge from leaves of C3 (spinach, lettuce, and pea) and C4 (sorghum and amaranthus) plants but not from rat liver--a tissue known to contain a bifunctional enzyme with both activities. [2-32P]Fructose 2,6-bisphosphate binding experiments also suggest that the major forms of these activities reside on different proteins in leaves.

NASA Discipline Exobiology↗

Crop Acreage Estimation: Landsat TM and Resourcesat-1 AWiFS Sensor Assessment of the Mississippi River Delta, 2005

AWiFs data are appropriate for crop acreage estimation over large, spectrally homogenous, crop areas such as the Mid-West, the Delta and the Northern Great Plains. Regression and Kappa statistics for soybean, corn, cotton, rice and sorghum produced using both the Landsat TM and AWiFS data are very similar. AWiFS data appear to be a suitable alternative or supplement to Landsat TM data for production of NASS'Cropland Data Layer product.

Boryan, Claire↗

Feasibility of Estimating Relative Nutrient Contributions of Agriculture using MODIS Time Series

Around the Gulf of Mexico, high-input crops in several regions make a significant contribution to nutrient loading of small to medium estuaries and to the near-shore Gulf. Some crops cultivated near the coast include sorghum in Texas, rice in Texas and Louisiana, sugarcane in Florida and Louisiana, citrus orchards in Florida, pecan orchards in Mississippi and Alabama, and heavy sod and ornamental production around Mobile and Tampa Bay. In addition to crops, management of timberlands in proximity to the coasts also plays a role in nutrient loading. In the summer of 2008, a feasibility project is planned to explore the use of NASA data to enhance the spatial and temporal resolution of near-coast nutrient source information available to the coastal community. The purpose of this project is to demonstrate the viability of nutrient source information products applicable to small to medium watersheds surrounding the Gulf of Mexico. Conceptually, these products are intended to complement estuarine nutrient monitoring.

Ross, Kenton W.↗

Feasibility of Estimating Relative Nutrient Contributions of Agriculture and Forests Using MODIS Time Series

Around the Gulf of Mexico, high-input crops in several regions make a significant contribution to nutrient loading of small to medium estuaries and to the near-shore Gulf. Some crops cultivated near the coast include sorghum in Texas, rice in Texas and Louisiana, sugarcane in Florida and Louisiana, citrus orchards in Florida, pecan orchards in Mississippi and Alabama, and heavy sod and ornamental production around Mobile and Tampa Bay. In addition to crops, management of timberlands in proximity to the coasts also plays a role in nutrient loading. In the summer of 2008, a feasibility project is planned to explore the use of NASA data to enhance the spatial and temporal resolution of near-coast nutrient source information available to the coastal community. The purpose of this project is to demonstrate the viability of nutrient source information products applicable to small to medium watersheds surrounding the Gulf of Mexico. Conceptually, these products are intended to complement estuarine nutrient monitoring.

Ross, Kenton W.↗

Recent Weather Extremes and Impacts on Agricultural Production and Vector-Borne Disease Outbreak Patterns

We document significant worldwide weather anomalies that affected agriculture and vector-borne disease outbreaks during the 2010-2012 period. We utilized 2000-2012 vegetation index and land surface temperature data from NASA's satellite-based Moderate Resolution Imaging Spectroradiometer (MODIS) to map the magnitude and extent of these anomalies for diverse regions including the continental United States, Russia, East Africa, Southern Africa, and Australia. We demonstrate that shifts in temperature and/or precipitation have significant impacts on vegetation patterns with attendant consequences for agriculture and public health. Weather extremes resulted in excessive rainfall and flooding as well as severe drought, which caused,10 to 80% variation in major agricultural commodity production (including wheat, corn, cotton, sorghum) and created exceptional conditions for extensive mosquito-borne disease outbreaks of dengue, Rift Valley fever, Murray Valley encephalitis, and West Nile virus disease. Analysis of MODIS data provided a standardized method for quantifying the extreme weather anomalies observed during this period. Assessments of land surface conditions from satellite-based systems such as MODIS can be a valuable tool in national, regional, and global weather impact determinations.

Weather↗

Is There Ecological Information in Optical Polarization Data?

Optical linear polarization? In remote sensing it's due to specular reflection. The first surface that incident light encounters - a smooth water surface or the waxy first surface of a leaf's cuticle, if it's even somewhat smooth (i.e. shiny) - will specularly reflect and linearly polarize the incident light. We provide three examples of the types of ecological information contained in remotely sensed optical linear polarization measurements. Remove the surface reflection to better see the interior. The linearly polarized light reflected by leaf surfaces contains no information about cellular pigments, metabolites, or water contained in the leaf interiors of a plant canopy, because it never enters the leaf interior to interact with them. Thus, for purposes of remotely sensing the leaf interiors of a plant canopy, the linearly polarized light should be subtracted from the total reflected light, because including it would add noise to the measurement. In particular 'minus specular' vegetation indices should allow improved monitoring of a plant canopy's physiological processes. Estimate plant development stage and yield. Wheat and sorghum grain heads, following emergence, rapidly extend upward and very quickly tower over nearby leaves, partially blocking our view of the sunlight reflected by those leaf surfaces. The resulting decrease in the amount of surface reflected and polarized sunlight, if monitored over time, potentially allows per-field estimates of the dates of the heading and flowering development stages to be interleaved with weather data in models, which is key to better estimating per-field grain yield. Similar polarization changes may occur in other grasses, such as oats, barley, corn and rice, each a crop so widely grown that it potentially affects climate at the regional scale. Wetlands Mapping. The sunlight specularly reflected by surface waters is blindingly bright, spectrally flat and polarized - all of which telegraphs that the ground area is inundated. Inundated soils exchange methane with the atmosphere; non-inundated soils, carbon dioxide. Aquatic plants growing through the water surface pipe the soil-produced methane via the stomata to the atmosphere, enhancing exchanges rates by factors of 10-20 compared to ebullition (bubbling) or diffusion through the water column to the atmosphere. Thus, mapping wetland areas into three community types - inundated areas with emergent vegetation, open water and uplands - provides potentially key information to water, carbon and energy budgets at landscape to global scales.

Water↗

Tag you're it: Application of stable isotope labeling and LC-MS to identify the precursors of specialized metabolites in plants

Untargeted liquid chromatography/mass spectrometry (LC-MS) can contribute a comprehensive and unbiased picture of the metabolic space of plants. These data can be used to quantify natural metabolite variation for genome wide association studies, to compare global metabolic responses from environmental or genetic perturbations, and to identify previously undescribed metabolites in Nature. A major limitation with untargeted metabolomics is the classification and identification of the thousands of metabolite features that can be detected in a single analytical run. Isotopic labeling improves the informational value of these datasets by categorizing metabolites as being derived from specific upstream precursors and/or to known metabolic pathways. When a 13 C-labeled precursor is fed to either a plant or tissue, the downstream metabolites produced from it have a higher m/z value than the molecules in the pre-existing pool, generating an m/z peak pair that can be specifically identified within the MS data. In this paper, we outline methods and principles to consider when supplementing untargeted MS data with isotopic labeling, including how to choose the appropriate isotopic label, grow and feed plant tissues to maximize label uptake and incorporation into derivatives, optimize LC-MS methods, and interpret the resulting labeling data. Although the focus here is on annotation of amino acid-derived metabolites using LC-MS, we anticipate that the methods are generally adaptable to other precursors, plant species, and chromatographic approaches.

59 BASIC BIOLOGICAL SCIENCES↗

Cas9-Based Metabolic Engineering of Issatchenkia orientalis for Enhanced Utilization of Cellulosic Hydrolysates

Issatchenkia orientalis, exhibiting high tolerance against harsh environmental conditions, is a promising metabolic engineering host for producing fuels and chemicals from cellulosic hydrolysates containing fermentation inhibitors under acidic conditions. Although genetic tools for I. orientalis exist, they require auxotrophic mutants so that the selection of a host strain is limited. We developed a drug resistance gene (cloNAT)-based genome-editing method for engineering any I. orientalis strains and engineered I. orientalis strains isolated from various sources for xylose fermentation. Specifically, xylose reductase, xylitol dehydrogenase, and xylulokinase from Scheffersomyces stipitis were integrated into an intended chromosomal locus in four I. orientalis strains (SD108, IO21, IO45, and IO46) through Cas9-based genome editing. Furthermore, the resulting strains (SD108X, IO21X, IO45X, and IO46X) efficiently produced ethanol from cellulosic and hemicellulosic hydrolysates even though the pH adjustment and nitrogen source were not provided. As they presented different fermenting capacities, selection of a host I. orientalis strain was crucial for producing fuels and chemicals using cellulosic hydrolysates.

09 BIOMASS FUELS↗